Miyakogusa Predicted Gene
- Lj5g3v1697440.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1697440.2 tr|G7I306|G7I306_MEDTR U-box domain-containing
protein OS=Medicago truncatula GN=MTR_070s0024 PE=4
S,88.13,0,GPROTEINBRPT,G-protein beta WD-40 repeat; WD40
repeat-like,WD40-repeat-containing domain; WD40 repea,CUFF.55755.2
(497 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G06880.2 | Symbols: | Transducin/WD40 repeat-like superfamil... 173 2e-43
AT3G06880.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 169 3e-42
AT5G51980.2 | Symbols: | Transducin/WD40 repeat-like superfamil... 60 3e-09
AT4G25440.1 | Symbols: ZFWD1 | zinc finger WD40 repeat protein 1... 60 3e-09
AT5G51980.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 60 3e-09
AT5G49200.1 | Symbols: | WD-40 repeat family protein / zfwd4 pr... 50 5e-06
>AT3G06880.2 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:2170516-2175686 REVERSE LENGTH=1264
Length = 1264
Score = 173 bits (439), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 139/491 (28%), Positives = 254/491 (51%), Gaps = 24/491 (4%)
Query: 12 GHISSSGKSYTEAWLLKIAGFDQPYNALMKVEQLGQHDNDLIETMEDEKNALNSWQKRIA 71
G S +G+ YT AWL+K G + M + + D L +T ++ W +IA
Sbjct: 787 GTYSWTGEPYTAAWLMKRGGLTSMSHMNM-IRNINWSDECLQDT------GIDGWCCKIA 839
Query: 72 SVLCNHENGSIFKALEECLKSNSLKMAKSCLVLATWLTHMLYTLPDTGVRDVARKSLLEE 131
+ + + F L+E LKS + ++K+CL+ WL+ + P++ ++ A + LL+E
Sbjct: 840 RRIIDTGKAT-FCGLQEGLKSKNKSVSKACLIAIAWLSIEISKGPNS-LKYSACEVLLDE 897
Query: 132 VINVLQSSKNLEEKILATLALKTFISDPSTHEALRVYAKSIYRTLRRLKKYSVVAVDIMK 191
V L LEE++LA + + F S H+ + +++ + +LRRL + +A ++ K
Sbjct: 898 VAQFLHPGLELEERLLACICIYNFSSGKGIHKLVN-FSEGVRESLRRLSHVTWMADELHK 956
Query: 192 VILNLKSVDVTELWSC--KEVVELDLSSNGEVLSMVYLNGQVLSGHTDGTIKVWDARKRI 249
L S + SC + VE+ S +G V +++Y G + SG +DG+I+VW+ K+I
Sbjct: 957 ATYYLFSKSDQRI-SCVHTQTVEMHQSGSGAVTALIYHKGLLFSGFSDGSIRVWNVNKKI 1015
Query: 250 PRVIQETHEHTKAVT--SLCSSGDRLYSGSLDKTIRVWTIKSDGIKCIDVYDIKEAVHEL 307
++ + EH VT SL +G+ + SGS DKTIRVW I ++C +V K+++ +L
Sbjct: 1016 ATLLWDIKEHKSTVTCFSLSETGECVLSGSADKTIRVWQIVKGKLECAEVIKTKDSIRKL 1075
Query: 308 AANDKLACYVSQGTGVKVFNWSEAPKLINFSKYVKSLAVAGDKLYCGCSGYSIQEVDLST 367
A + +++G +K+ + S + I K VKS+ A K+Y GC SIQE+ ++
Sbjct: 1076 EAFGNMIFVITKGHKMKLLDSSRISQSIFKGKGVKSMVSAQGKIYIGCIDTSIQELIVAN 1135
Query: 368 YTSNSFFTGTRK-LLGKQTIHSLQIHDDYLFACGSSVDATAGKIFSLS-QKMVVGSLSTG 425
TR L + I+S+ ++ D L++ + V+ + K + + + + G
Sbjct: 1136 KREKEIKAPTRSWRLQNKPINSVVVYKDMLYSSSTYVEMSNIKDLRRNYEPQMSITAEKG 1195
Query: 426 LDIHRIAINSDFIF--AGTKFGTIEVWLKDKFTRVASIKMAGGHTKITSLVSDVDGMMLF 483
+I + + DFI+ + T+++WL+ +V +++ G +KITSL++ D ++F
Sbjct: 1196 SNIVAMGVVEDFIYLNRSSSANTLQIWLRRTQQKVG--RLSAG-SKITSLLTAND--IVF 1250
Query: 484 VGSSDGKIQVW 494
G+ G I+ W
Sbjct: 1251 CGTEAGVIKGW 1261
>AT3G06880.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:2169899-2175686 REVERSE LENGTH=1261
Length = 1261
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 137/486 (28%), Positives = 251/486 (51%), Gaps = 24/486 (4%)
Query: 12 GHISSSGKSYTEAWLLKIAGFDQPYNALMKVEQLGQHDNDLIETMEDEKNALNSWQKRIA 71
G S +G+ YT AWL+K G + M + + D L +T ++ W +IA
Sbjct: 787 GTYSWTGEPYTAAWLMKRGGLTSMSHMNM-IRNINWSDECLQDT------GIDGWCCKIA 839
Query: 72 SVLCNHENGSIFKALEECLKSNSLKMAKSCLVLATWLTHMLYTLPDTGVRDVARKSLLEE 131
+ + + F L+E LKS + ++K+CL+ WL+ + P++ ++ A + LL+E
Sbjct: 840 RRIIDTGKAT-FCGLQEGLKSKNKSVSKACLIAIAWLSIEISKGPNS-LKYSACEVLLDE 897
Query: 132 VINVLQSSKNLEEKILATLALKTFISDPSTHEALRVYAKSIYRTLRRLKKYSVVAVDIMK 191
V L LEE++LA + + F S H+ + +++ + +LRRL + +A ++ K
Sbjct: 898 VAQFLHPGLELEERLLACICIYNFSSGKGIHKLVN-FSEGVRESLRRLSHVTWMADELHK 956
Query: 192 VILNLKSVDVTELWSC--KEVVELDLSSNGEVLSMVYLNGQVLSGHTDGTIKVWDARKRI 249
L S + SC + VE+ S +G V +++Y G + SG +DG+I+VW+ K+I
Sbjct: 957 ATYYLFSKSDQRI-SCVHTQTVEMHQSGSGAVTALIYHKGLLFSGFSDGSIRVWNVNKKI 1015
Query: 250 PRVIQETHEHTKAVT--SLCSSGDRLYSGSLDKTIRVWTIKSDGIKCIDVYDIKEAVHEL 307
++ + EH VT SL +G+ + SGS DKTIRVW I ++C +V K+++ +L
Sbjct: 1016 ATLLWDIKEHKSTVTCFSLSETGECVLSGSADKTIRVWQIVKGKLECAEVIKTKDSIRKL 1075
Query: 308 AANDKLACYVSQGTGVKVFNWSEAPKLINFSKYVKSLAVAGDKLYCGCSGYSIQEVDLST 367
A + +++G +K+ + S + I K VKS+ A K+Y GC SIQE+ ++
Sbjct: 1076 EAFGNMIFVITKGHKMKLLDSSRISQSIFKGKGVKSMVSAQGKIYIGCIDTSIQELIVAN 1135
Query: 368 YTSNSFFTGTRK-LLGKQTIHSLQIHDDYLFACGSSVDATAGKIFSLS-QKMVVGSLSTG 425
TR L + I+S+ ++ D L++ + V+ + K + + + + G
Sbjct: 1136 KREKEIKAPTRSWRLQNKPINSVVVYKDMLYSSSTYVEMSNIKDLRRNYEPQMSITAEKG 1195
Query: 426 LDIHRIAINSDFIF--AGTKFGTIEVWLKDKFTRVASIKMAGGHTKITSLVSDVDGMMLF 483
+I + + DFI+ + T+++WL+ +V +++ G +KITSL++ D ++F
Sbjct: 1196 SNIVAMGVVEDFIYLNRSSSANTLQIWLRRTQQKVG--RLSAG-SKITSLLTAND--IVF 1250
Query: 484 VGSSDG 489
G+ G
Sbjct: 1251 CGTEAG 1256
>AT5G51980.2 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:21113650-21115902 REVERSE LENGTH=443
Length = 443
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 75/284 (26%), Positives = 122/284 (42%), Gaps = 36/284 (12%)
Query: 143 EEKILATLALKTFISDPSTHEALRVYAKSIYRTLRRLKKYSVVAVDIMKVILNLKSV--- 199
EK+++ +AL PS + L Y S TLR S ++K+ + V
Sbjct: 150 HEKLVSGIAL------PSGSDKL--YTGSKDETLRVWDCASGQCTGVLKLGGEIGCVLSE 201
Query: 200 ---------DVTELWSCKEVVELDLSSN-GEVLSMVYLNGQVLSGHTDGTIKVW--DARK 247
++ + W+ + + LS G+V S+V + +G DG+I W +A
Sbjct: 202 GPWLLVGMPNLVKAWNIETNADQSLSGPVGQVYSLVVGTDLLFAGTQDGSILAWRYNAAT 261
Query: 248 RIPRVIQETHEHTKAVTSLCSSGDRLYSGSLDKTIRVWTIKSDGIKCID-VYDIKEAVHE 306
HT AV +L +RLYSGS+DKTI+VW++ D ++CI + D V
Sbjct: 262 NCFEPSASLTGHTLAVVTLYVGANRLYSGSMDKTIKVWSL--DNLQCIQTLTDHSSVVMS 319
Query: 307 LAANDKLACYVSQGTGVKVFNWSEAPKL-INFSKYVKS--LAVAG-------DKLYCGCS 356
L D+ S VK++ E L + ++ + LA+ G L C C+
Sbjct: 320 LICWDQFLLSCSLDNTVKIWAAIEGGNLEVTYTHKEEHGVLALCGVHDAEAKPVLLCACN 379
Query: 357 GYSIQEVDLSTYTSNSFFTGTRKLLGKQTIHSLQIHDDYLFACG 400
+++ DL + FT K+ KQ I ++QI +F G
Sbjct: 380 DNTLRLYDLPSLGLFIRFTERGKIFAKQEIRAIQIGPGGIFFTG 423
>AT4G25440.1 | Symbols: ZFWD1 | zinc finger WD40 repeat protein 1 |
chr4:13007107-13009381 REVERSE LENGTH=430
Length = 430
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 59/215 (27%), Positives = 97/215 (45%), Gaps = 22/215 (10%)
Query: 200 DVTELWSCKEVVELDLSSN-GEVLSMVYLNGQVLSGHTDGTIKVW--DARKRIPRVIQET 256
++ + W+ + +L L+ G+V S+V + +G DG+I VW ++
Sbjct: 204 NLVKAWNIQNNADLSLNGPVGQVYSLVVGTDLLFAGTQDGSILVWRYNSTTSCFDPAASL 263
Query: 257 HEHTKAVTSLCSSGDRLYSGSLDKTIRVWTIKSDGIKCID-VYDIKEAVHELAANDKLAC 315
HT AV SL +RLYSG++D +I+VW++ D ++CI + + V L D+
Sbjct: 264 LGHTLAVVSLYVGANRLYSGAMDNSIKVWSL--DNLQCIQTLTEHTSVVMSLICWDQFLL 321
Query: 316 YVSQGTGVKVFNWSEAPKL---INFSKYVKSLAVAG-------DKLYCGCSGYSIQEVDL 365
S VK++ +E L + LA+ G L C C+ S+ DL
Sbjct: 322 SCSLDNTVKIWAATEGGNLEVTYTHKEEYGVLALCGVHDAEAKPVLLCSCNDNSLHLYDL 381
Query: 366 STYTSNSFFTGTRKLLGKQTIHSLQIHDDYLFACG 400
++T K+L KQ I S+QI +F G
Sbjct: 382 PSFTERG------KILAKQEIRSIQIGPGGIFFTG 410
>AT5G51980.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:21113650-21115902 REVERSE LENGTH=437
Length = 437
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 74/284 (26%), Positives = 122/284 (42%), Gaps = 42/284 (14%)
Query: 143 EEKILATLALKTFISDPSTHEALRVYAKSIYRTLRRLKKYSVVAVDIMKVILNLKSV--- 199
EK+++ +AL PS + L Y S TLR S ++K+ + V
Sbjct: 150 HEKLVSGIAL------PSGSDKL--YTGSKDETLRVWDCASGQCTGVLKLGGEIGCVLSE 201
Query: 200 ---------DVTELWSCKEVVELDLSSN-GEVLSMVYLNGQVLSGHTDGTIKVW--DARK 247
++ + W+ + + LS G+V S+V + +G DG+I W +A
Sbjct: 202 GPWLLVGMPNLVKAWNIETNADQSLSGPVGQVYSLVVGTDLLFAGTQDGSILAWRYNAAT 261
Query: 248 RIPRVIQETHEHTKAVTSLCSSGDRLYSGSLDKTIRVWTIKSDGIKCID-VYDIKEAVHE 306
HT AV +L +RLYSGS+DKTI+VW++ D ++CI + D V
Sbjct: 262 NCFEPSASLTGHTLAVVTLYVGANRLYSGSMDKTIKVWSL--DNLQCIQTLTDHSSVVMS 319
Query: 307 LAANDKLACYVSQGTGVKVFNWSEAPKL-INFSKYVKS--LAVAG-------DKLYCGCS 356
L D+ S VK++ E L + ++ + LA+ G L C C+
Sbjct: 320 LICWDQFLLSCSLDNTVKIWAAIEGGNLEVTYTHKEEHGVLALCGVHDAEAKPVLLCACN 379
Query: 357 GYSIQEVDLSTYTSNSFFTGTRKLLGKQTIHSLQIHDDYLFACG 400
+++ DL ++T K+ KQ I ++QI +F G
Sbjct: 380 DNTLRLYDLPSFTERG------KIFAKQEIRAIQIGPGGIFFTG 417
>AT5G49200.1 | Symbols: | WD-40 repeat family protein / zfwd4
protein (ZFWD4) | chr5:19947796-19949055 REVERSE
LENGTH=419
Length = 419
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 6/81 (7%)
Query: 219 GEVLSMVYLNGQVLSGHTDGTIKVW----DARKRIPRVIQETHEHTKAVTSLCSSGDRLY 274
G+V +M NG + +G + G+I VW D+ + + H+ VT G LY
Sbjct: 213 GQVNAMTIANGMLFAGTSSGSILVWKATTDSESDPFKYLTSLEGHSGEVTCFAVGGQMLY 272
Query: 275 SGSLDKTIRVWTIKSDGIKCI 295
SGS+DKTI++W + + ++CI
Sbjct: 273 SGSVDKTIKMWDLNT--LQCI 291