Miyakogusa Predicted Gene

Lj5g3v1696930.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1696930.1 Non Chatacterized Hit- tr|C0PRG5|C0PRG5_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,31.63,0.0001,coiled-coil,NULL; seg,NULL,CUFF.55739.1
         (372 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02920.2 | Symbols:  | unknown protein; BEST Arabidopsis thal...   185   5e-47
AT4G02920.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   185   6e-47
AT1G03340.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   123   2e-28

>AT4G02920.2 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G03340.1); Has 41 Blast hits to 41 proteins in
           12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr4:1292816-1294670 FORWARD
           LENGTH=419
          Length = 419

 Score =  185 bits (469), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 131/383 (34%), Positives = 201/383 (52%), Gaps = 34/383 (8%)

Query: 4   KLCLMTSHGCP-PGLALQQELAMMGSIMKACQCQXXXXXXXXXXEILRYQSPSLRLNPYE 62
           KLC MTSHG   PGL L Q+L     I +  +            EI+   + S  LN   
Sbjct: 3   KLCFMTSHGYSIPGLGLPQDLCNTEIIKQNSRSHLVNPGARQ--EII--PASSFNLN--- 55

Query: 63  TRMMQDEWFSWNP------FVNLDMSTLRPVFPVIQETFPRTVLFSLGVVKQFNEHDQFL 116
           T +++     W P      FV +D + ++P+   + ET P +++ S G+  +F   ++ +
Sbjct: 56  TELLE----PWKPVSSFSQFVEIDSAMMKPLLMDVHETAPESLILSFGIADKFARQEKVM 111

Query: 117 QSITSDTAEAGLGGAHIDLLSNLMDLQLSGIDERQQLFP----SLVYPNSKLYISKPLLD 172
           + + S + E    G  + LL+ LM+ +   +    QL P    S++Y N +L   KP+LD
Sbjct: 112 EFLLSQSEEFKEKGFDMSLLNELMEFE--SMKSSSQLRPYDTSSVLYLNQEL--GKPVLD 167

Query: 173 IFQSSAFSSKITVHPDGQVTFMGTTI-EMKNLLSLVAESYSSECTMHMGEKRSMVIPYFT 231
           + +    + + +V  +G V F  ++  E+ +LLS+ +E   S  +     + S +IP+F 
Sbjct: 168 LVRDMMENPEFSVRSNGHVLFSSSSNPELNDLLSIASEFNLSRNSTTKWRQLSPLIPHFQ 227

Query: 232 RLKIKKVEARSLSSTLDINSTLAVPLRSPXXXXXXX-XXXXXXXXARERDLYKKNYVHAC 290
           R +        L +      T+  PL+SP                A+ERDLYK+N++HA 
Sbjct: 228 RFESDVFTPAKLKAV-----TVLAPLKSPEKSRLKSPRKHNTKRKAKERDLYKRNHLHAY 282

Query: 291 ESLLFLMV-DKRQNRKTAILSLKKSGPELPDLLTQFSAGIAGTGLAVLLTVVCKLATGRV 349
           ESLL LM+ +  +++ T +LSL+KS  EL +LLTQFS   AGTG+AVL +VVC LA+ RV
Sbjct: 283 ESLLSLMIGNDHRHKHTTVLSLQKSCGELSELLTQFSITAAGTGIAVLFSVVCSLASRRV 342

Query: 350 PFCTSKLFSTGFGFGLVWLSWAV 372
           PFC +K F TG G  LV LSWAV
Sbjct: 343 PFCANKFFDTGLGLSLVILSWAV 365


>AT4G02920.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT1G03340.1); Has 41 Blast hits to 41 proteins in
           12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr4:1292816-1294670 FORWARD
           LENGTH=418
          Length = 418

 Score =  185 bits (469), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 131/383 (34%), Positives = 201/383 (52%), Gaps = 35/383 (9%)

Query: 4   KLCLMTSHGCP-PGLALQQELAMMGSIMKACQCQXXXXXXXXXXEILRYQSPSLRLNPYE 62
           KLC MTSHG   PGL L Q+L     I  +   +          EI+   + S  LN   
Sbjct: 3   KLCFMTSHGYSIPGLGLPQDLCNTEIIKNS---RSHLVNPGARQEII--PASSFNLN--- 54

Query: 63  TRMMQDEWFSWNP------FVNLDMSTLRPVFPVIQETFPRTVLFSLGVVKQFNEHDQFL 116
           T +++     W P      FV +D + ++P+   + ET P +++ S G+  +F   ++ +
Sbjct: 55  TELLE----PWKPVSSFSQFVEIDSAMMKPLLMDVHETAPESLILSFGIADKFARQEKVM 110

Query: 117 QSITSDTAEAGLGGAHIDLLSNLMDLQLSGIDERQQLFP----SLVYPNSKLYISKPLLD 172
           + + S + E    G  + LL+ LM+ +   +    QL P    S++Y N +L   KP+LD
Sbjct: 111 EFLLSQSEEFKEKGFDMSLLNELMEFE--SMKSSSQLRPYDTSSVLYLNQEL--GKPVLD 166

Query: 173 IFQSSAFSSKITVHPDGQVTFMGTTI-EMKNLLSLVAESYSSECTMHMGEKRSMVIPYFT 231
           + +    + + +V  +G V F  ++  E+ +LLS+ +E   S  +     + S +IP+F 
Sbjct: 167 LVRDMMENPEFSVRSNGHVLFSSSSNPELNDLLSIASEFNLSRNSTTKWRQLSPLIPHFQ 226

Query: 232 RLKIKKVEARSLSSTLDINSTLAVPLRSPXXXXXXX-XXXXXXXXARERDLYKKNYVHAC 290
           R +        L +      T+  PL+SP                A+ERDLYK+N++HA 
Sbjct: 227 RFESDVFTPAKLKAV-----TVLAPLKSPEKSRLKSPRKHNTKRKAKERDLYKRNHLHAY 281

Query: 291 ESLLFLMV-DKRQNRKTAILSLKKSGPELPDLLTQFSAGIAGTGLAVLLTVVCKLATGRV 349
           ESLL LM+ +  +++ T +LSL+KS  EL +LLTQFS   AGTG+AVL +VVC LA+ RV
Sbjct: 282 ESLLSLMIGNDHRHKHTTVLSLQKSCGELSELLTQFSITAAGTGIAVLFSVVCSLASRRV 341

Query: 350 PFCTSKLFSTGFGFGLVWLSWAV 372
           PFC +K F TG G  LV LSWAV
Sbjct: 342 PFCANKFFDTGLGLSLVILSWAV 364


>AT1G03340.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT4G02920.1); Has 44 Blast hits to 41 proteins in
           13 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi
           - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr1:819712-821227 FORWARD
           LENGTH=385
          Length = 385

 Score =  123 bits (308), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/287 (33%), Positives = 144/287 (50%), Gaps = 32/287 (11%)

Query: 74  NPFVNLDMSTLRPVFPVIQETFPRTVLFSLGVVKQFNEHDQFLQSITSDTAEA-GLGGAH 132
           N F+  D + ++     + ET P  V  SLG+ +Q+   ++ L+ + S + E     G  
Sbjct: 66  NHFLEFDSTMMKHRLMDVHETGPDPVCLSLGITQQYARKEEVLEFLLSRSEEELKEEGFD 125

Query: 133 IDLLSNLMDLQLSGIDERQQLFPSLVYPNSKLYISKPLLDIFQSSAFSSKITVHPDGQVT 192
           + LLS LM     G+D         +  +S+   +KPLLD+              D  + 
Sbjct: 126 LSLLSELM-----GLDA--------LRSSSQQPYAKPLLDLMV------------DANIL 160

Query: 193 FMGTTIEMKNLLSLVAESYSSECTMHMGEKRSMVIPYFTRLKIKKVEARSLSSTLDINST 252
           F  +  E+ +L+S  AE +    +     K S ++P F R    +V   +L    D   T
Sbjct: 161 FSSSRAELNDLVSTAAEFHRLRNSTRW-RKLSRLVPQFQRFD-SEVPIDTLQLPEDA-VT 217

Query: 253 LAVPLRSPXXXXXXXXXXXXXXXARER--DLYKKNYVHACESLLFLMVDKRQNRKTAILS 310
           LA P +SP                R++  DLY++N +HACESLL LM+   Q+RKT +LS
Sbjct: 218 LAPP-KSPKKTRLKPSPKKQNPKIRDKEYDLYERNRLHACESLLSLMIGNEQHRKTTMLS 276

Query: 311 LKKSGPELPDLLTQFSAGIAGTGLAVLLTVVCKLATGRVPFCTSKLF 357
           LKKS  EL +LLTQ S G AGTG+AVL  +VC +A+ +VPFC ++ F
Sbjct: 277 LKKSRGELFELLTQCSIGFAGTGMAVLFFLVCNVASRQVPFCANQFF 323