Miyakogusa Predicted Gene

Lj5g3v1696800.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1696800.1 Non Chatacterized Hit- tr|I0YUY1|I0YUY1_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,31.21,2e-16,SUBFAMILY NOT NAMED,NULL; SYNAPSE-ASSOCIATED
PROTEIN,NULL; coiled-coil,NULL; BSD domain-like,NULL; B,CUFF.55720.1
         (481 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G03350.1 | Symbols:  | BSD domain-containing protein | chr1:8...   247   1e-65
AT4G13110.1 | Symbols:  | BSD domain-containing protein | chr4:7...   141   9e-34

>AT1G03350.1 | Symbols:  | BSD domain-containing protein |
           chr1:822834-824246 REVERSE LENGTH=470
          Length = 470

 Score =  247 bits (630), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 117/201 (58%), Positives = 145/201 (72%), Gaps = 9/201 (4%)

Query: 43  WNFGGLIKTLTAKSESIIETYRRDLQEFSTGLKTEIEVAQGS---VGHVIDEFGNTVIKG 99
           W+FGGL+KTL  +SES+IETYRRDL+EF TGLK EIEVAQGS   VGH IDE GNTV+KG
Sbjct: 49  WSFGGLMKTLATRSESVIETYRRDLEEFGTGLKKEIEVAQGSLGTVGHAIDELGNTVLKG 108

Query: 100 TAQIISHGKDAILAVNLXXXXXXXXXXXHRKQXXXXXXXXXXXXXXYSRFDAQVRAIQGD 159
           TA+II+ GK+AILA                                YSRFDAQ+RA+QGD
Sbjct: 109 TAEIIAQGKEAILAAG------NESDSSDNNSSQSFGRRDSFSSKPYSRFDAQIRAVQGD 162

Query: 160 VNTYSEAPEDLGEFEKWKSGFSLDGKGDEIEGLFRENEAMESVYKRVVPNVVDHESFWFR 219
           +NTY E PED  +++KW+S FSLDGK +E+E L  EN  M+ VYKRVVP++VDHE+FWFR
Sbjct: 163 LNTYCEEPEDSDDYKKWESAFSLDGKAEEMEKLLEENGDMKGVYKRVVPSMVDHETFWFR 222

Query: 220 YYYKVYRLKKAEDVRARLVRR 240
           Y+Y+V +LK+AED+RA LV+R
Sbjct: 223 YFYRVNKLKQAEDLRANLVKR 243


>AT4G13110.1 | Symbols:  | BSD domain-containing protein |
           chr4:7641507-7642457 FORWARD LENGTH=316
          Length = 316

 Score =  141 bits (356), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 80/217 (36%), Positives = 113/217 (52%), Gaps = 40/217 (18%)

Query: 45  FGGLIKTLTAKSESIIETYRRDLQEFSTGLKTEIEVAQG--------------------- 83
           FG LIKTL+ KSES+I +YRRDL EF + LK E  + +                      
Sbjct: 25  FGNLIKTLSTKSESVIGSYRRDLVEFGSELKKETSIIRRVASRLPDSLEIGASVASESLE 84

Query: 84  SVGHVIDEFGNTVIKGTAQIISHGKDAILAVNLXXXXXXXXXXXHRKQXXXXXXXXXXXX 143
           SVG VID+ G TV K TA+IIS GK+++                   +            
Sbjct: 85  SVGQVIDDIGATVWKSTAKIISRGKESL-------------------EPNRDRTNQVLSL 125

Query: 144 XXYSRFDAQVRAIQGDVNTYSEAPEDLGEFEKWKSGFSLDGKGDEIEGLFRENEAMESVY 203
             Y RF+  + A+Q D  T+   P+DL +FE W  G  L+ K +EI  L   N+ ++ +Y
Sbjct: 126 KPYRRFEMMLLALQSDKGTFVREPDDLSDFENWSLGLKLEEKRNEIVELINGNKGVKEIY 185

Query: 204 KRVVPNVVDHESFWFRYYYKVYRLKKAEDVRARLVRR 240
           + +VP  VD E+FW RYYYKVY+L++ E+ R +LV+R
Sbjct: 186 EEIVPVEVDAETFWRRYYYKVYKLEQVEEARVKLVKR 222