Miyakogusa Predicted Gene

Lj5g3v1696780.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1696780.1 tr|E8ZCI3|E8ZCI3_HELAN Auxin binding protein
(Fragment) OS=Helianthus annuus GN=abp1 PE=4
SV=1,77.59,4e-19,AUXINBINDNGP,Auxin-binding protein; RmlC-like
cupins,RmlC-like cupin domain; Auxin_BP,Auxin-binding ,CUFF.55711.1
         (191 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02980.1 | Symbols: ABP1, ABP | endoplasmic reticulum auxin b...   270   5e-73

>AT4G02980.1 | Symbols: ABP1, ABP | endoplasmic reticulum auxin
           binding protein 1 | chr4:1319902-1321449 REVERSE
           LENGTH=198
          Length = 198

 Score =  270 bits (689), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 125/166 (75%), Positives = 145/166 (87%), Gaps = 2/166 (1%)

Query: 26  PCSITELPLVRNISEIPQDNYGRPGLSHITVAGSILHGLKEVEVWLQTFSPGTRTPIHRH 85
           PC I  LP+VRNIS++PQDNYGRPGLSH+TVAGS+LHG+KEVE+WLQTF+PG+ TPIHRH
Sbjct: 35  PCPINGLPIVRNISDLPQDNYGRPGLSHMTVAGSVLHGMKEVEIWLQTFAPGSETPIHRH 94

Query: 86  SCEEVFIVLKGSGTLYLASNSHGKCPGQPQEHFVFPNSTFHIPLNDAHQLWNTNEHEDLQ 145
           SCEEVF+VLKGSGTLYLA  +HG  PG+P E  +F NST HIP+NDAHQ+ NT  HEDLQ
Sbjct: 95  SCEEVFVVLKGSGTLYLA-ETHGNFPGKPIEFPIFANSTIHIPINDAHQVKNTG-HEDLQ 152

Query: 146 VLVIISRPPVKVFIYDDWSMPHIAARLKFPYYWDEHCYQDTPKDEL 191
           VLVIISRPP+K+FIY+DW MPH AARLKFPYYWDE C Q++ KDEL
Sbjct: 153 VLVIISRPPIKIFIYEDWFMPHTAARLKFPYYWDEQCIQESQKDEL 198