Miyakogusa Predicted Gene
- Lj5g3v1682500.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1682500.1 Non Chatacterized Hit- tr|I1LU44|I1LU44_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.13965 PE,60.22,0,P-loop
containing nucleoside triphosphate hydrolases,NULL;
SNF2_N,SNF2-related; no
description,NULL;,NODE_49571_length_3140_cov_22.225159.path2.1
(521 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G05120.1 | Symbols: | Helicase protein with RING/U-box domai... 450 e-126
AT1G02670.1 | Symbols: | P-loop containing nucleoside triphosph... 165 6e-41
AT1G11100.2 | Symbols: | SNF2 domain-containing protein / helic... 150 2e-36
AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein / ... 139 6e-33
AT1G61140.2 | Symbols: EDA16 | SNF2 domain-containing protein / ... 137 1e-32
AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein / ... 137 1e-32
AT1G50410.1 | Symbols: | SNF2 domain-containing protein / helic... 134 1e-31
AT3G16600.1 | Symbols: | SNF2 domain-containing protein / helic... 130 2e-30
AT3G20010.1 | Symbols: | SNF2 domain-containing protein / helic... 107 3e-23
AT1G11100.1 | Symbols: | SNF2 domain-containing protein / helic... 103 3e-22
AT5G43530.1 | Symbols: | Helicase protein with RING/U-box domai... 79 1e-14
AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein | chr5:75... 76 7e-14
AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDD... 74 4e-13
AT2G40770.1 | Symbols: | zinc ion binding;DNA binding;helicases... 70 3e-12
AT5G05130.1 | Symbols: | DNA/RNA helicase protein | chr5:151217... 70 4e-12
AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin re... 70 4e-12
AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containi... 69 6e-12
AT3G57300.2 | Symbols: INO80 | INO80 ortholog | chr3:21199612-21... 68 1e-11
AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic ac... 61 2e-09
AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA ... 61 2e-09
AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 | c... 58 2e-08
AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 | c... 57 2e-08
AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 57 2e-08
AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 57 2e-08
AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 57 2e-08
AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 | chr5:25... 57 3e-08
AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORW... 57 3e-08
AT5G19310.1 | Symbols: | Homeotic gene regulator | chr5:6498906... 56 6e-08
AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 | chr... 55 2e-07
AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator | chr3:... 54 2e-07
AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containi... 54 3e-07
AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 | chr2:5544... 54 3e-07
AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 54 3e-07
AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 54 3e-07
AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helic... 54 3e-07
AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 54 4e-07
AT2G44980.1 | Symbols: | SNF2 domain-containing protein / helic... 53 4e-07
AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog | chr3:21... 51 2e-06
>AT1G05120.1 | Symbols: | Helicase protein with RING/U-box domain |
chr1:1471624-1476067 REVERSE LENGTH=833
Length = 833
Score = 450 bits (1158), Expect = e-126, Method: Compositional matrix adjust.
Identities = 224/376 (59%), Positives = 264/376 (70%), Gaps = 32/376 (8%)
Query: 162 LLLWHAWEDEQERWITENLSEDVDLDQHSELMNESAEAPSDLTMPLLRYQREWLAWALKQ 221
+LLW WE EQ WI E++SEDVDLDQH+ ++ E+AE PSDL MPLLRYQ+E+LAWA KQ
Sbjct: 94 VLLWETWEKEQNSWIDEHMSEDVDLDQHNAVIAETAEPPSDLIMPLLRYQKEFLAWATKQ 153
Query: 222 ESSATRGGILADEMGMGKTIQAIALVLAKREFYPIGCEPDEPSASPGSSRVLPLIKATLV 281
E S GGILADEMGMGKTIQAI+LVLA+RE D + TLV
Sbjct: 154 EQSVA-GGILADEMGMGKTIQAISLVLARREV-------DRAQFGEAAG-------CTLV 198
Query: 282 ICPVVAVTQWVNEINRFTLKGSTKVLVYHGAKRGKSGEHFGEYDFVITTYSIVESEYRKH 341
+CP+VAV+QW+NEI RFT GSTKVLVYHGAKR K+ + F YDFV+TTYS VESEYR++
Sbjct: 199 LCPLVAVSQWLNEIARFTSPGSTKVLVYHGAKRAKNIKEFMNYDFVLTTYSTVESEYRRN 258
Query: 342 MMPPKKKCPYCGKLFYHNKLSFHQTYFCGPTAIKTEKQSKQSRKKELDAFTKKLKEPRIT 401
+MP K +C YC K FY KL H YFCGP+A+KT KQSKQ RKK D+ +++ KE
Sbjct: 259 IMPSKVQCAYCSKSFYPKKLVIHLRYFCGPSAVKTAKQSKQKRKKTSDSSSQQGKEADAG 318
Query: 402 NE--------------DSDAVG---QEKSFLHAVKWSRIILDEAHYIKSRHCNTAKAVLA 444
+ + D +G +EKS LH+VKW+RIILDEAHYIK R NTA+AV A
Sbjct: 319 EDKKLKKSKKKTKQTVEKDQLGSDDKEKSLLHSVKWNRIILDEAHYIKERRSNTARAVFA 378
Query: 445 LESSYRWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCRTLDXXXXXXXXXXXXX 504
LE++YRWALSGTPLQNRVGELYSL+RFLQI PYSYY CKDCDCR LD
Sbjct: 379 LEATYRWALSGTPLQNRVGELYSLIRFLQIRPYSYYFCKDCDCRILDYVAHQSCPHCPHN 438
Query: 505 XVRHFCWWNKYIATPI 520
VRHFCWWNKY+A PI
Sbjct: 439 AVRHFCWWNKYVAKPI 454
>AT1G02670.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:576046-580299
FORWARD LENGTH=678
Length = 678
Score = 165 bits (418), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 84/161 (52%), Positives = 111/161 (68%), Gaps = 14/161 (8%)
Query: 180 LSEDVDLDQHSELMNESAEAPSDLTMPLLRYQREWLAWALKQESSATRGGILADEMGMGK 239
++ED D D+ + ++ E+AE P DL +PLL+YQ+E+LAWA QE SA RGGILADEMGMGK
Sbjct: 107 MTEDDDFDEQNAVIAEAAEQPLDLIIPLLKYQKEFLAWATIQELSAVRGGILADEMGMGK 166
Query: 240 TIQAIALVLAKREFYPIGCEPDEPSASPGSSRVLPLIKATLVICPVVAVTQWVNEINRFT 299
TIQAI+LVLA+RE ++ + TLV+ P VA++QW++EI+R T
Sbjct: 167 TIQAISLVLARREV--------------DRAKSREAVGHTLVLVPPVALSQWLDEISRLT 212
Query: 300 LKGSTKVLVYHGAKRGKSGEHFGEYDFVITTYSIVESEYRK 340
GST+VL YHG KR K+ + YDFV+TT IVE+EYRK
Sbjct: 213 SPGSTRVLQYHGPKRDKNVQKLMNYDFVLTTSPIVENEYRK 253
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/76 (60%), Positives = 57/76 (75%), Gaps = 2/76 (2%)
Query: 398 PRITNE--DSDAVGQEKSFLHAVKWSRIILDEAHYIKSRHCNTAKAVLALESSYRWALSG 455
P + NE + V + S LH++KW+RII+DEAH IK+R TAKAV ALE++YRWALSG
Sbjct: 245 PIVENEYRKDEGVDETMSPLHSIKWNRIIVDEAHDIKNRSSRTAKAVFALEATYRWALSG 304
Query: 456 TPLQNRVGELYSLVRF 471
TPLQN V ELYSLV +
Sbjct: 305 TPLQNDVDELYSLVSY 320
>AT1G11100.2 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr1:3703934-3709302 REVERSE LENGTH=1269
Length = 1269
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 109/320 (34%), Positives = 149/320 (46%), Gaps = 48/320 (15%)
Query: 185 DLDQHSELMNESAEAPSD--LTMPLLRYQREWLAWALKQESSATR--GGILADEMGMGKT 240
DL QHS S +P D L + LLR+QR L+W ++E+S GGILAD+ G+GKT
Sbjct: 522 DLSQHS-----SEASPPDGVLAVSLLRHQRIALSWMSQKETSGNPCFGGILADDQGLGKT 576
Query: 241 IQAIALVLAKREFYPIGCEPDEPSASPGSSRVLPLI-------------------KATLV 281
+ IAL+L +R + CE D + S ++ TL+
Sbjct: 577 VSTIALILTERSTPYLPCEEDSKNGGCNQSDHSQVVFNENKVVEDSLCKMRGRPAAGTLI 636
Query: 282 ICPVVAVTQWVNEI-NRFTLKGSTKVLVYHGAKRGKSGEHFGEYDFVITTYSIVESEYRK 340
+CP + QW +E+ + TL+ VLVYHG R K +YD VITTYS+V E K
Sbjct: 637 VCPTSLMRQWADELRKKVTLEAHLSVLVYHGCSRTKDPHELAKYDVVITTYSLVSVEVPK 696
Query: 341 HMMPPKKKCPYCGKLFYHNKLSFHQTYFCGPTAIKTEKQSKQSRKKELDAFTKKLKEPRI 400
P+ + K H E S KK+L KK + R
Sbjct: 697 Q---PRDRAD-------EEKGGIHDG--------GVESVGFGSNKKDLPNSQKKGTKKR- 737
Query: 401 TNEDSDAVGQEKSFLHAVKWSRIILDEAHYIKSRHCNTAKAVLALESSYRWALSGTPLQN 460
+ D + V L V W R++LDEA IK+ + A L + RW LSGTP+QN
Sbjct: 738 KHMDCEPVEFLSGPLAQVSWFRVVLDEAQSIKNYKTQASIACSGLHAKRRWCLSGTPIQN 797
Query: 461 RVGELYSLVRFLQIVPYSYY 480
+ +LYS RFL+ PYS Y
Sbjct: 798 SIADLYSYFRFLKYDPYSSY 817
>AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22535038-22540610 REVERSE
LENGTH=1280
Length = 1280
Score = 139 bits (349), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 106/324 (32%), Positives = 151/324 (46%), Gaps = 72/324 (22%)
Query: 203 LTMPLLRYQREWLAWALKQESSA--TRGGILADEMGMGKTIQAIALVL------------ 248
LT+PLLR+QR L+W ++E+S GGILAD+ G+GKT+ IAL+L
Sbjct: 552 LTVPLLRHQRIALSWMAQKETSGFPCSGGILADDQGLGKTVSTIALILKERSKPAQACEE 611
Query: 249 -AKREFYPIG-----CEPDEPSA--------------------SPGSSRVLPLIKATLVI 282
K+E + + C P +PS S G P TLV+
Sbjct: 612 STKKEIFDLESETGECAPLKPSGRSKHFEHSQLLSNENKVGGDSVGKVTGRP-AAGTLVV 670
Query: 283 CPVVAVTQWVNEINR-FTLKGSTKVLVYHGAKRGKSGEHFGEYDFVITTYSIVESEYRKH 341
CP + QW +E+++ T + + VLVYHG+ R K +YD V+TT+SIV E K
Sbjct: 671 CPTSVMRQWADELHKKVTSEANLSVLVYHGSSRTKDPHELAKYDVVVTTFSIVSMEVPKQ 730
Query: 342 MMPPKKKCPYCGKLFYHNKLSFHQTYFCGPTAIKTEKQSKQSRKKELDAFTKKLKEPRIT 401
+ + G H+ + T FC S + RK D+ K K+ ++
Sbjct: 731 PLVDDEDEEKDG---VHDGGT-AATGFC----------SNKKRKYPPDSKKKGSKKKKV- 775
Query: 402 NEDSDAVGQEKSFLHA----VKWSRIILDEAHYIKSRHCNTAKAVLALESSYRWALSGTP 457
FL V W R++LDEA IK+ A+A L + RW LSGTP
Sbjct: 776 -----------EFLSGPLAKVSWFRVVLDEAQSIKNYKTQVARACWGLRAKRRWCLSGTP 824
Query: 458 LQNRVGELYSLVRFLQIVPYSYYL 481
+QN + +LYS RFL+ PYS Y+
Sbjct: 825 IQNSIDDLYSYFRFLKYDPYSSYV 848
>AT1G61140.2 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22536293-22540610 REVERSE
LENGTH=1022
Length = 1022
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 107/324 (33%), Positives = 150/324 (46%), Gaps = 72/324 (22%)
Query: 203 LTMPLLRYQREWLAWALKQESSA--TRGGILADEMGMGKTIQAIALVL------------ 248
LT+PLLR+QR L+W ++E+S GGILAD+ G+GKT+ IAL+L
Sbjct: 559 LTVPLLRHQRIALSWMAQKETSGFPCSGGILADDQGLGKTVSTIALILKERSKPAQACEE 618
Query: 249 -AKREFYPIG-----CEPDEPSA--------------------SPGSSRVLPLIKATLVI 282
K+E + + C P +PS S G P TLV+
Sbjct: 619 STKKEIFDLESETGECAPLKPSGRSKHFEHSQLLSNENKVGGDSVGKVTGRP-AAGTLVV 677
Query: 283 CPVVAVTQWVNEINR-FTLKGSTKVLVYHGAKRGKSGEHFGEYDFVITTYSIVESEYRKH 341
CP + QW +E+++ T + + VLVYHG+ R K +YD V+TT+SIV E K
Sbjct: 678 CPTSVMRQWADELHKKVTSEANLSVLVYHGSSRTKDPHELAKYDVVVTTFSIVSMEVPKQ 737
Query: 342 MMPPKKKCPYCGKLFYHNKLSFHQTYFCGPTAIKTEKQSKQSRKKELDAFTKKLKEPRIT 401
+ + K H G TA T S + RK D+ K K+ ++
Sbjct: 738 PLVDDED---------EEKDGVHD----GGTA-ATGFCSNKKRKYPPDSKKKGSKKKKV- 782
Query: 402 NEDSDAVGQEKSFLHA----VKWSRIILDEAHYIKSRHCNTAKAVLALESSYRWALSGTP 457
FL V W R++LDEA IK+ A+A L + RW LSGTP
Sbjct: 783 -----------EFLSGPLAKVSWFRVVLDEAQSIKNYKTQVARACWGLRAKRRWCLSGTP 831
Query: 458 LQNRVGELYSLVRFLQIVPYSYYL 481
+QN + +LYS RFL+ PYS Y+
Sbjct: 832 IQNSIDDLYSYFRFLKYDPYSSYV 855
>AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22535038-22539756 REVERSE
LENGTH=1122
Length = 1122
Score = 137 bits (346), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 106/324 (32%), Positives = 151/324 (46%), Gaps = 72/324 (22%)
Query: 203 LTMPLLRYQREWLAWALKQESSA--TRGGILADEMGMGKTIQAIALVL------------ 248
LT+PLLR+QR L+W ++E+S GGILAD+ G+GKT+ IAL+L
Sbjct: 394 LTVPLLRHQRIALSWMAQKETSGFPCSGGILADDQGLGKTVSTIALILKERSKPAQACEE 453
Query: 249 -AKREFYPIG-----CEPDEPSA--------------------SPGSSRVLPLIKATLVI 282
K+E + + C P +PS S G P TLV+
Sbjct: 454 STKKEIFDLESETGECAPLKPSGRSKHFEHSQLLSNENKVGGDSVGKVTGRP-AAGTLVV 512
Query: 283 CPVVAVTQWVNEINR-FTLKGSTKVLVYHGAKRGKSGEHFGEYDFVITTYSIVESEYRKH 341
CP + QW +E+++ T + + VLVYHG+ R K +YD V+TT+SIV E K
Sbjct: 513 CPTSVMRQWADELHKKVTSEANLSVLVYHGSSRTKDPHELAKYDVVVTTFSIVSMEVPKQ 572
Query: 342 MMPPKKKCPYCGKLFYHNKLSFHQTYFCGPTAIKTEKQSKQSRKKELDAFTKKLKEPRIT 401
+ + G H+ + T FC S + RK D+ K K+ ++
Sbjct: 573 PLVDDEDEEKDG---VHDGGT-AATGFC----------SNKKRKYPPDSKKKGSKKKKV- 617
Query: 402 NEDSDAVGQEKSFLHA----VKWSRIILDEAHYIKSRHCNTAKAVLALESSYRWALSGTP 457
FL V W R++LDEA IK+ A+A L + RW LSGTP
Sbjct: 618 -----------EFLSGPLAKVSWFRVVLDEAQSIKNYKTQVARACWGLRAKRRWCLSGTP 666
Query: 458 LQNRVGELYSLVRFLQIVPYSYYL 481
+QN + +LYS RFL+ PYS Y+
Sbjct: 667 IQNSIDDLYSYFRFLKYDPYSSYV 690
>AT1G50410.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr1:18672828-18677365 FORWARD LENGTH=981
Length = 981
Score = 134 bits (338), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 98/327 (29%), Positives = 148/327 (45%), Gaps = 66/327 (20%)
Query: 203 LTMPLLRYQREWLAWALKQESSATR--GGILADEMGMGKTIQAIALVL------------ 248
L++PL+++Q+ LAW ++E+++ GGILAD+ G+GKT+ IAL+L
Sbjct: 222 LSVPLMKHQKIALAWMFQKETNSLHCMGGILADDQGLGKTVSTIALILKQMHEAKLKSKN 281
Query: 249 -AKREFYPIGCEPDEPS----------ASPGS-----------------------SRVLP 274
+E + + D+ S AS GS +R P
Sbjct: 282 SGNQEAEALDLDADDESENAFEKPESKASNGSGVNGDSGIKKAKGEEASTSTRKFNRKRP 341
Query: 275 LIKATLVICPVVAVTQWVNEIN-RFTLKGSTKVLVYHGAKRGKSGEHFGEYDFVITTYSI 333
TL++CP V QW E++ + T + VL+YHG R K +YD V+TTY+I
Sbjct: 342 -AAGTLIVCPASVVRQWARELDEKVTDEAKLSVLIYHGGNRTKDPIELAKYDVVMTTYAI 400
Query: 334 VESEYRKHMMPPKKKCPYCGKLFYHNKLSFHQTYFCGPTAIKTEKQSKQSRKKELDAFTK 393
V +E K + + Y F S ++K + TK
Sbjct: 401 VSNEVPKQPLVDDDENDEKNSEKYGLASGF----------------SINKKRKNVVGTTK 444
Query: 394 KLKEPRITNEDSDAVGQEKSFLHAVKWSRIILDEAHYIKSRHCNTAKAVLALESSYRWAL 453
K K+ + N D+ + L V W R++LDEA IK+ A+A L + RW L
Sbjct: 445 KSKKKKGNNNAGDSSDPDSGTLAKVGWFRVVLDEAQTIKNHRTQVARACCGLRAKRRWCL 504
Query: 454 SGTPLQNRVGELYSLVRFLQIVPYSYY 480
SGTP+QN + +LYS RFL+ PY+ Y
Sbjct: 505 SGTPIQNTIDDLYSYFRFLKYDPYAVY 531
>AT3G16600.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr3:5652839-5655670 REVERSE LENGTH=638
Length = 638
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 90/282 (31%), Positives = 135/282 (47%), Gaps = 59/282 (20%)
Query: 200 PSDLTMPLLRYQREWLAWALKQE--SSATRGGILADEMGMGKTIQAIALVLAKREFYPIG 257
P LT+PL+R+Q+ L W K+E S GGILAD+ G+GKTI I+L+L ++
Sbjct: 46 PGVLTVPLMRHQKIALNWMRKKEKRSRHCLGGILADDQGLGKTISTISLILLQKL----- 100
Query: 258 CEPDEPSASPGSSRVLPLIKATLVICPVVAVTQWVNEIN-RFTLKGSTKVLVYHGAKRGK 316
S S R TL++CP V QW E+ + + + VLV+HG+ R K
Sbjct: 101 -----KSQSKQRKRKGQNSGGTLIVCPASVVKQWAREVKEKVSDEHKLSVLVHHGSHRTK 155
Query: 317 SGEHFGEYDFVITTYSIVESEYRKHMMPPKKKCPYCGKLFYHNKLSFHQTYFCGPTAIKT 376
YD V+TTY+IV +E ++ M
Sbjct: 156 DPTEIAIYDVVMTTYAIVTNEVPQNPM--------------------------------L 183
Query: 377 EKQSKQSRKKELDAFTKKLKEPRITNEDSDAVGQEKSFLHAVKWSRIILDEAHYIKSRHC 436
+ ++ LD + L +P + A+G+ V+W R++LDEAH IK+
Sbjct: 184 NRYDSMRGRESLDGSS--LIQPHV-----GALGR-------VRWLRVVLDEAHTIKNHRT 229
Query: 437 NTAKAVLALESSYRWALSGTPLQNRVGELYSLVRFLQIVPYS 478
AKA +L + RW L+GTP++N+V +LYS RFL+ PY+
Sbjct: 230 LIAKACFSLRAKRRWCLTGTPIKNKVDDLYSYFRFLRYHPYA 271
>AT3G20010.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr3:6971352-6976340 FORWARD LENGTH=1047
Length = 1047
Score = 107 bits (266), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 97/204 (47%), Gaps = 17/204 (8%)
Query: 278 ATLVICPVVAVTQWVNEIN-RFTLKGSTKVLVYHGAKRGKSGEHFGEYDFVITTYSIVES 336
TL++CP V QW E++ + + + VLVYHG+ R K EYD V+TTY+IV +
Sbjct: 415 GTLIVCPASVVRQWARELDEKVSEESKLSVLVYHGSNRTKDPNELAEYDVVVTTYAIVTN 474
Query: 337 EYRKHMMPPKKKCPYCGKLFYHNKLSFHQTYFCGPTAIKTEKQSKQSRKKELDAFTKKLK 396
E + + + Y F ++K ++ RK D +
Sbjct: 475 EAPNKFLVDEDENDEKNTDRYGLASGFSNNKKRKVVVGASKKSKRRGRKSTNDTSS---- 530
Query: 397 EPRITNEDSDAVGQEKSFLHAVKWSRIILDEAHYIKSRHCNTAKAVLALESSYRWALSGT 456
EP D +G+ V W RI+LDEA IK+ A++ L + RW LSGT
Sbjct: 531 EP-----DCGPLGK-------VGWFRIVLDEAQTIKNYRTQMARSCCTLRAKRRWCLSGT 578
Query: 457 PLQNRVGELYSLVRFLQIVPYSYY 480
P+QN + +LYS RFL+ PY+ Y
Sbjct: 579 PIQNTIDDLYSYFRFLRYDPYAVY 602
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 43/61 (70%), Gaps = 2/61 (3%)
Query: 193 MNESAEAPSDLTMPLLRYQREWLAWALKQESSATR--GGILADEMGMGKTIQAIALVLAK 250
M ES P L++PL+R+Q+ LAW ++E+S+ GGILAD+ G+GKT+ IAL+L +
Sbjct: 267 MTESDLPPGTLSVPLMRHQKIALAWMFQKETSSFNCPGGILADDQGLGKTVSTIALILKQ 326
Query: 251 R 251
+
Sbjct: 327 K 327
>AT1G11100.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr1:3703934-3709302 REVERSE LENGTH=1226
Length = 1226
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 67/182 (36%), Positives = 92/182 (50%), Gaps = 31/182 (17%)
Query: 185 DLDQHSELMNESAEAPSD--LTMPLLRYQREWLAWALKQESSATR--GGILADEMGMGKT 240
DL QHS S +P D L + LLR+QR L+W ++E+S GGILAD+ G+GKT
Sbjct: 523 DLSQHS-----SEASPPDGVLAVSLLRHQRIALSWMSQKETSGNPCFGGILADDQGLGKT 577
Query: 241 IQAIALVLAKREFYPIGCEPDEPSASPGSSRVLPLI-------------------KATLV 281
+ IAL+L +R + CE D + S ++ TL+
Sbjct: 578 VSTIALILTERSTPYLPCEEDSKNGGCNQSDHSQVVFNENKVVEDSLCKMRGRPAAGTLI 637
Query: 282 ICPVVAVTQWVNEI-NRFTLKGSTKVLVYHGAKRGKSGEHFGEYDFVITTYSIVESEYRK 340
+CP + QW +E+ + TL+ VLVYHG R K +YD VITTYS+V RK
Sbjct: 638 VCPTSLMRQWADELRKKVTLEAHLSVLVYHGCSRTKDPHELAKYDVVITTYSLVSK--RK 695
Query: 341 HM 342
HM
Sbjct: 696 HM 697
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 40/66 (60%)
Query: 415 LHAVKWSRIILDEAHYIKSRHCNTAKAVLALESSYRWALSGTPLQNRVGELYSLVRFLQI 474
L V W R++LDEA IK+ + A L + RW LSGTP+QN + +LYS RFL+
Sbjct: 709 LAQVSWFRVVLDEAQSIKNYKTQASIACSGLHAKRRWCLSGTPIQNSIADLYSYFRFLKY 768
Query: 475 VPYSYY 480
PYS Y
Sbjct: 769 DPYSSY 774
>AT5G43530.1 | Symbols: | Helicase protein with RING/U-box domain |
chr5:17489327-17494830 FORWARD LENGTH=1277
Length = 1277
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 66/130 (50%), Gaps = 18/130 (13%)
Query: 227 RGGILADEMGMGKTIQAIALVLAKREFYPIGCEPDEPSASPGSSRV-----------LPL 275
RGGILAD MG+GKT+ IAL+LA+ P P+ L
Sbjct: 681 RGGILADAMGLGKTVMTIALILAR----PGRGNPENEDVLVADVNADKRNRKEIHMALTT 736
Query: 276 IKA---TLVICPVVAVTQWVNEINRFTLKGSTKVLVYHGAKRGKSGEHFGEYDFVITTYS 332
+KA TL+ICP+ ++QW +E+ + + VLVY+G R + +D V+TTY
Sbjct: 737 VKAKGGTLIICPMALLSQWKDELETHSKPDTVSVLVYYGGDRTHDAKAIASHDVVLTTYG 796
Query: 333 IVESEYRKHM 342
++ S Y++ M
Sbjct: 797 VLTSAYKQDM 806
Score = 75.5 bits (184), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 43/65 (66%)
Query: 413 SFLHAVKWSRIILDEAHYIKSRHCNTAKAVLALESSYRWALSGTPLQNRVGELYSLVRFL 472
S H + W RI+LDEAH IKS AKA L S RW L+GTPLQN++ +LYSL+ FL
Sbjct: 809 SIFHRIDWYRIVLDEAHTIKSWKTQAAKATFELSSHCRWCLTGTPLQNKLEDLYSLLCFL 868
Query: 473 QIVPY 477
+ P+
Sbjct: 869 HVEPW 873
>AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein |
chr5:7565374-7570871 REVERSE LENGTH=1029
Length = 1029
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 29/122 (23%)
Query: 400 ITNEDSDAVGQEKSFLHAVKWSRIILDEAHYIKSRHCNTAKAVLALESSYRWALSGTPLQ 459
+T+E S + ++AV+W RI+LDEAH IK+ + A AL + RW L+GTP+Q
Sbjct: 547 LTSEFSQENSADHEGIYAVRWFRIVLDEAHTIKNSKSQISLAAAALVADRRWCLTGTPIQ 606
Query: 460 NRVGELYSLVRFLQIVPYSYYLCKDCDCRTLDXXXXXXXXXXXXXXVRHFCWWNKYIATP 519
N + +LYSL+RFL+I P+ + WWNK + P
Sbjct: 607 NNLEDLYSLLRFLRIEPWGTW-----------------------------AWWNKLVQKP 637
Query: 520 IQ 521
+
Sbjct: 638 FE 639
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 64/139 (46%), Gaps = 27/139 (19%)
Query: 227 RGGILADEMGMGKTIQAIALVLA------KREFYPIGCEPDEPSASPGSSRVLPLIKAT- 279
RGGILAD MG+GKT+ I+L+LA F E D+ +S P +KAT
Sbjct: 413 RGGILADAMGLGKTVMTISLLLAHSWKAASTGFLCPNYEGDKVISSSVDDLTSPPVKATK 472
Query: 280 --------------------LVICPVVAVTQWVNEINRFTLKGSTKVLVYHGAKRGKSGE 319
L++CP+ + QW EI GS V V++G R K +
Sbjct: 473 FLGFDKRLLEQKSVLQNGGNLIVCPMTLLGQWKTEIEMHAKPGSLSVYVHYGQSRPKDAK 532
Query: 320 HFGEYDFVITTYSIVESEY 338
+ D VITTY ++ SE+
Sbjct: 533 LLSQSDVVITTYGVLTSEF 551
>AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1
| chromatin remodeling 1 | chr5:26649050-26652869
FORWARD LENGTH=764
Length = 764
Score = 73.6 bits (179), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 98/266 (36%), Gaps = 88/266 (33%)
Query: 207 LLRYQREWLAWALKQESSATRGGILADEMGMGKTIQAIALVLAKREFYPIGCEPDEPSAS 266
L YQ + + W + + GILAD+MG+GKTIQ I + + G D P
Sbjct: 202 LKSYQLKGVKWLISLWQNGL-NGILADQMGLGKTIQTIGFLSHLK-----GNGLDGP--- 252
Query: 267 PGSSRVLPLIKATLVICPVVAVTQWVNEINRFTLKGSTKVLVYHGAKRGKSGEHFGEYDF 326
LVI P+ ++ W NEI RFT S ++YHG K +
Sbjct: 253 ------------YLVIAPLSTLSNWFNEIARFT--PSINAIIYHGDKNQR---------- 288
Query: 327 VITTYSIVESEYRKHMMPPKKKCPYCGKLFYHNKLSFHQTYFCGPTAIKTEKQSKQSRKK 386
+ RKHM PK P
Sbjct: 289 --------DELRRKHM--PKTVGP------------------------------------ 302
Query: 387 ELDAFTKKLKEPRITNEDSDAVGQEKSFLHAVKWSRIILDEAHYIKSRHCNTAKAVLALE 446
K P + A+ K L W +++DE H +K+ C + + L+
Sbjct: 303 ---------KFPIVITSYEVAMNDAKRILRHYPWKYVVIDEGHRLKNHKCKLLRELKHLK 353
Query: 447 SSYRWALSGTPLQNRVGELYSLVRFL 472
+ L+GTPLQN + EL+SL+ F+
Sbjct: 354 MDNKLLLTGTPLQNNLSELWSLLNFI 379
>AT2G40770.1 | Symbols: | zinc ion binding;DNA
binding;helicases;ATP binding;nucleic acid binding |
chr2:17013535-17021315 REVERSE LENGTH=1664
Length = 1664
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 54/221 (24%), Positives = 86/221 (38%), Gaps = 63/221 (28%)
Query: 264 SASPGSSRVLPLIKATLVICPVVAVTQWVNEINRFTLKGSTKVLVYHGAKRGKSGEH--- 320
+ASP S+ ATL++CP + QW +EI R T GS +Y G + E
Sbjct: 493 TASPIST------GATLIVCPAPILPQWHSEITRHTRLGSLITCIYEGVRNASLSEEPMI 546
Query: 321 ----FGEYDFVITTYSIVESEYRKHMMPPKKKCPYCGKLFYHNKLSFHQTYFCGPTAIKT 376
D V+TTY +++ + H +C L F + Y PT
Sbjct: 547 DITELLNADIVLTTYDVLKEDL-THDFDRHDGDRHC--------LRFQKRYPVIPTP--- 594
Query: 377 EKQSKQSRKKELDAFTKKLKEPRITNEDSDAVGQEKSFLHAVKWSRIILDEAHYIKSRHC 436
L + W RI LDEA ++S
Sbjct: 595 --------------------------------------LTRIFWWRICLDEAQMVESNAA 616
Query: 437 NTAKAVLALESSYRWALSGTPLQNRVGELYSLVRFLQIVPY 477
+ L L + +RW ++GTP+Q ++ +L+ L++FL+ P+
Sbjct: 617 AATEMALRLYTKHRWCITGTPIQRKLDDLFGLLKFLKANPF 657
>AT5G05130.1 | Symbols: | DNA/RNA helicase protein |
chr5:1512173-1514918 FORWARD LENGTH=862
Length = 862
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 48/68 (70%)
Query: 411 EKSFLHAVKWSRIILDEAHYIKSRHCNTAKAVLALESSYRWALSGTPLQNRVGELYSLVR 470
E S + ++W RIILDEAH IK+ + ++ V L++S RWA++GTP+QN +LYSL+
Sbjct: 403 EDSPVKKMEWLRIILDEAHTIKNANAQQSRVVCKLKASRRWAVTGTPIQNGSFDLYSLMA 462
Query: 471 FLQIVPYS 478
FL+ P+S
Sbjct: 463 FLRFEPFS 470
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 90/222 (40%), Gaps = 60/222 (27%)
Query: 186 LDQHSELMNE--SAEAPSDLTMP-LLRYQREWLAWALKQESSA----------------- 225
+D++ +LM + +AE P ++ L +Q+E L W L +E S
Sbjct: 188 VDENVKLMGKLVAAEPPREVIKSELFAHQKEGLGWLLHREKSGELPPFWEEKDGEFLNTL 247
Query: 226 -----------TRGGILADEMGMGKTIQAIALVLAKREFYPIGCEP-DEPSASPG----- 268
RGG+ AD+MG+GKT+ ++L+ R P +EP G
Sbjct: 248 TNYRSDKRPDPLRGGVFADDMGLGKTLTLLSLIAFDRYGNASTSTPTEEPLDGEGDKIEK 307
Query: 269 --------------------SSRVLPL---IKATLVICPVVAVTQWVNEINRFTLKGSTK 305
+ V+ + K TL++CP ++ W+ ++ T+ G K
Sbjct: 308 KGKKRGRGKSSESVTRKKLKTDDVVGMNVSQKTTLIVCPPSVISAWITQLEEHTVPGILK 367
Query: 306 VLVYHGAKRGKSGEHFGEYDFVITTYSIVESEYRKHMMPPKK 347
V +YHG +R +YD V+TTY + E P KK
Sbjct: 368 VYMYHGGERTDDVNELMKYDIVLTTYGTLAVEESWEDSPVKK 409
>AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin
remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763
FORWARD LENGTH=1384
Length = 1384
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 120/292 (41%), Gaps = 70/292 (23%)
Query: 181 SEDVDLDQHSELMNESAEAPSDLTMPLLRYQREWLAWALKQESSATRGGILADEMGMGKT 240
S+DVD ++ + P L L YQ E L + L+ S ILADEMG+GKT
Sbjct: 247 SKDVDHKRNPRDFQQFDHTPEFLKGLLHPYQLEGLNF-LRFSWSKQTHVILADEMGLGKT 305
Query: 241 IQAIALVLAKREFYPIGCEPDEPSASPGSSRVLPLIKATLVICPVVAVTQWVNEINRFTL 300
IQ+IAL+ AS ++P LVI P+ + W E T
Sbjct: 306 IQSIALL-----------------ASLFEENLIP----HLVIAPLSTLRNWEREFA--TW 342
Query: 301 KGSTKVLVYHGAKRGKSGEHFGEYDFVITTYSIVESEYRKHMMPPKKKCPYCGKLFYHNK 360
V++Y G + ++ VI R+H FY
Sbjct: 343 APQMNVVMYFGTAQARA---------VI----------REHE-------------FY--- 367
Query: 361 LSFHQTYFCGPTAIKTEKQSKQSRKKELDAFTKKLKEPRITNEDSDAVGQEKSFLHAVKW 420
LS Q + + +SKQ R K F L + N DS + L +KW
Sbjct: 368 LSKDQKKIKKKKSGQISSESKQKRIK----FDVLLTSYEMINLDS-------AVLKPIKW 416
Query: 421 SRIILDEAHYIKSRHCNTAKAVLALESSYRWALSGTPLQNRVGELYSLVRFL 472
+I+DE H +K++ ++ S++R L+GTPLQN + EL+ L+ FL
Sbjct: 417 ECMIVDEGHRLKNKDSKLFSSLTQYSSNHRILLTGTPLQNNLDELFMLMHFL 468
>AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr2:523481-526884 FORWARD LENGTH=763
Length = 763
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 111/284 (39%), Gaps = 84/284 (29%)
Query: 193 MNESAEAPSDLTMPLLR-YQREWLAWALKQESSATRGGILADEMGMGKTIQAIA-LVLAK 250
++++ +A P+L+ YQ + + L G ILADEMG+GKTIQAI L L
Sbjct: 198 IDDACKAEDSDFQPILKPYQLVGVNFLLLLYKKGIEGAILADEMGLGKTIQAITYLTLLS 257
Query: 251 REFYPIGCEPDEPSASPGSSRVLPLIKATLVICPVVAVTQWVNEINRFTLKGSTKVLVYH 310
R + PG LV+CP + W E+ ++ S VL YH
Sbjct: 258 R-----------LNNDPGPH---------LVVCPASVLENWERELRKWC--PSFTVLQYH 295
Query: 311 GAKRGKSGEHFGEYDFVITTYSIVESEYRKHMMPPKKKCPYCGKLFYHNKLSFHQTYFCG 370
GA R S + PP C LF
Sbjct: 296 GAARAAYSRELN-------------SLSKAGKPPPFNVLLVCYSLF-------------- 328
Query: 371 PTAIKTEKQSKQSRKKELDAFTKKLKEPRITNEDSDAVGQEKSFLHAVKWSRIILDEAHY 430
E+ S+Q + ++ L +WS +++DEAH
Sbjct: 329 ------ERHSEQQK-------------------------DDRKVLKRWRWSCVLMDEAHA 357
Query: 431 IKSRHCNTAKAVLAL--ESSYRWALSGTPLQNRVGELYSLVRFL 472
+K ++ K ++++ ++ R L+GTPLQN + EL+SL+ F+
Sbjct: 358 LKDKNSYRWKNLMSVARNANQRLMLTGTPLQNDLHELWSLLEFM 401
>AT3G57300.2 | Symbols: INO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1540
Length = 1540
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/293 (24%), Positives = 115/293 (39%), Gaps = 53/293 (18%)
Query: 181 SEDVDLDQHSEL-MNESAEAPSDLTMPLLRYQREWLAWALKQESSATRGGILADEMGMGK 239
S ++DL S + + + + P L YQ + L W + GILADEMG+GK
Sbjct: 559 SSNIDLHNPSTMPVTSTVQTPELFKGTLKEYQMKGLQWLVNCYEQGL-NGILADEMGLGK 617
Query: 240 TIQAIALVLAKREFYPIGCEPDEPSASPGSSRVLPLIKATLVICPVVAVTQWVNEINRFT 299
TIQA+A + E I LV+ P + W +EI+RF
Sbjct: 618 TIQAMAFLAHLAEEKNIWG-------------------PFLVVAPASVLNNWADEISRFC 658
Query: 300 LKGSTKVLVYHGAKRGKSGEHFGEYDFVITTYSIVESEYRKHMMPPKKKCPYCGKLFYHN 359
K L Y G + E + + PK+ + + +
Sbjct: 659 --PDLKTLPYWGG--------------------LQERTILRKNINPKRVMFFSTWIISFD 696
Query: 360 KLSFHQTYFCGPTAIKTEKQSKQSRKKELDAFTKKLKEPRITNEDSDAVGQEKSFLHAVK 419
+ Q C Q+ ++DA L IT+ + ++ + VK
Sbjct: 697 PWAVRQICICKRACNVVRFQTLS----DMDAGFHIL----ITS--YQLLVTDEKYFRRVK 746
Query: 420 WSRIILDEAHYIKSRHCNTAKAVLALESSYRWALSGTPLQNRVGELYSLVRFL 472
W ++LDEA IKS K +L+ R L+GTP+QN + EL++L+ F+
Sbjct: 747 WQYMVLDEAQAIKSSSSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFI 799
>AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA
binding;helicases | chr3:20092361-20104153 FORWARD
LENGTH=2129
Length = 2129
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 16/139 (11%)
Query: 201 SDLTMPLLRYQREWLAWALKQESSATRGGILADEMGMGKTIQAIALVLAKREFYPIGCEP 260
++L + L RYQ+E + W L GIL D+MG+GKT+QA A+V +
Sbjct: 1476 TELKVQLRRYQQEGINW-LGFLKRFKLHGILCDDMGLGKTLQASAIV---------ASDA 1525
Query: 261 DEPSASPGSSRVLPLIKATLVICPVVAVTQWVNEINRFTLKGSTKVLVYHGAKRGKSG-- 318
E S V P ++++CP V W EI ++ VL Y G+ + +
Sbjct: 1526 AERRGSTDELDVFP----SIIVCPSTLVGHWAFEIEKYIDLSLLSVLQYVGSAQDRVSLR 1581
Query: 319 EHFGEYDFVITTYSIVESE 337
E F ++ +IT+Y +V +
Sbjct: 1582 EQFNNHNVIITSYDVVRKD 1600
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%)
Query: 406 DAVGQEKSFLHAVKWSRIILDEAHYIKSRHCNTAKAVLALESSYRWALSGTPLQNRVGEL 465
D V ++ +L W+ ILDE H IK+ AV L++ +R LSGTP+QN + EL
Sbjct: 1595 DVVRKDVDYLTQFSWNYCILDEGHIIKNAKSKITAAVKQLKAQHRLILSGTPIQNNIMEL 1654
Query: 466 YSLVRFL 472
+SL FL
Sbjct: 1655 WSLFDFL 1661
>AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA
binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA
binding;helicases | chr3:20092361-20103807 FORWARD
LENGTH=2045
Length = 2045
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 16/139 (11%)
Query: 201 SDLTMPLLRYQREWLAWALKQESSATRGGILADEMGMGKTIQAIALVLAKREFYPIGCEP 260
++L + L RYQ+E + W L GIL D+MG+GKT+QA A+V +
Sbjct: 1445 TELKVQLRRYQQEGINW-LGFLKRFKLHGILCDDMGLGKTLQASAIV---------ASDA 1494
Query: 261 DEPSASPGSSRVLPLIKATLVICPVVAVTQWVNEINRFTLKGSTKVLVYHGAKRGKSG-- 318
E S V P ++++CP V W EI ++ VL Y G+ + +
Sbjct: 1495 AERRGSTDELDVFP----SIIVCPSTLVGHWAFEIEKYIDLSLLSVLQYVGSAQDRVSLR 1550
Query: 319 EHFGEYDFVITTYSIVESE 337
E F ++ +IT+Y +V +
Sbjct: 1551 EQFNNHNVIITSYDVVRKD 1569
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 39/67 (58%)
Query: 406 DAVGQEKSFLHAVKWSRIILDEAHYIKSRHCNTAKAVLALESSYRWALSGTPLQNRVGEL 465
D V ++ +L W+ ILDE H IK+ AV L++ +R LSGTP+QN + EL
Sbjct: 1564 DVVRKDVDYLTQFSWNYCILDEGHIIKNAKSKITAAVKQLKAQHRLILSGTPIQNNIMEL 1623
Query: 466 YSLVRFL 472
+SL FL
Sbjct: 1624 WSLFDFL 1630
>AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1072
Length = 1072
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%)
Query: 410 QEKSFLHAVKWSRIILDEAHYIKSRHCNTAKAVLALESSYRWALSGTPLQNRVGELYSLV 469
+EK+ L W II+DEAH IK+ + +K + ++YR ++GTPLQN + EL++L+
Sbjct: 306 KEKTTLRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALL 365
Query: 470 RFL 472
FL
Sbjct: 366 NFL 368
>AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1069
Length = 1069
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%)
Query: 410 QEKSFLHAVKWSRIILDEAHYIKSRHCNTAKAVLALESSYRWALSGTPLQNRVGELYSLV 469
+EK+ L W II+DEAH IK+ + +K + ++YR ++GTPLQN + EL++L+
Sbjct: 306 KEKTTLRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALL 365
Query: 470 RFL 472
FL
Sbjct: 366 NFL 368
>AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1056
Length = 1056
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%)
Query: 410 QEKSFLHAVKWSRIILDEAHYIKSRHCNTAKAVLALESSYRWALSGTPLQNRVGELYSLV 469
+EK+ L W II+DEAH IK+ + +K + ++YR ++GTPLQN + EL++L+
Sbjct: 301 KEKTALRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALL 360
Query: 470 RFL 472
FL
Sbjct: 361 NFL 363
>AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1057
Length = 1057
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%)
Query: 410 QEKSFLHAVKWSRIILDEAHYIKSRHCNTAKAVLALESSYRWALSGTPLQNRVGELYSLV 469
+EK+ L W II+DEAH IK+ + +K + ++YR ++GTPLQN + EL++L+
Sbjct: 301 KEKTALRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALL 360
Query: 470 RFL 472
FL
Sbjct: 361 NFL 363
>AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1055
Length = 1055
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%)
Query: 410 QEKSFLHAVKWSRIILDEAHYIKSRHCNTAKAVLALESSYRWALSGTPLQNRVGELYSLV 469
+EK+ L W II+DEAH IK+ + +K + ++YR ++GTPLQN + EL++L+
Sbjct: 301 KEKTALRRFSWRYIIIDEAHRIKNENSLLSKTMRLFSTNYRLLITGTPLQNNLHELWALL 360
Query: 470 RFL 472
FL
Sbjct: 361 NFL 363
>AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 |
chr5:25592160-25598405 REVERSE LENGTH=1090
Length = 1090
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 37/53 (69%)
Query: 419 KWSRIILDEAHYIKSRHCNTAKAVLALESSYRWALSGTPLQNRVGELYSLVRF 471
KW +ILDE H IK+ + AK++L + SS+R +SGTP+QN + EL++L F
Sbjct: 508 KWDYMILDEGHLIKNPNTQRAKSLLEIPSSHRIIISGTPIQNNLKELWALFNF 560
>AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORWARD
LENGTH=862
Length = 862
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 58/117 (49%), Gaps = 14/117 (11%)
Query: 199 APSDLTMPLLRYQREWLAWALKQESSATRGGILADEMGMGKTIQAIALVLAKREFYPIGC 258
P+ + LL +QRE + + + GGIL D+MG+GKTIQ IA + A G
Sbjct: 131 VPASINCRLLEHQREGVKFMYNLYKN-NHGGILGDDMGLGKTIQTIAFLAA-----VYGK 184
Query: 259 EPDEPSASPGSSRVLPLIKA-TLVICPVVAVTQWVNEINRFTLKGSTKVLVYHGAKR 314
+ D G S +L K L+ICP + W +E +R+ KV VYHG+ R
Sbjct: 185 DGD-----AGESCLLESDKGPVLIICPSSIIHNWESEFSRWA--SFFKVSVYHGSNR 234
>AT5G19310.1 | Symbols: | Homeotic gene regulator |
chr5:6498906-6503432 FORWARD LENGTH=1064
Length = 1064
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 406 DAVGQEKSFLHAVKWSRIILDEAHYIKSRHCNTAKAV-LALESSYRWALSGTPLQNRVGE 464
D + ++K+FL + W+ +I+DE H +K+ C AK + R L+GTP+QN + E
Sbjct: 493 DLIMRDKAFLKKIDWNYMIVDEGHRLKNHECALAKTLGTGYRIKRRLLLTGTPIQNSLQE 552
Query: 465 LYSLVRFL 472
L+SL+ FL
Sbjct: 553 LWSLLNFL 560
>AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 |
chr5:18083659-18092162 REVERSE LENGTH=2223
Length = 2223
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 411 EKSFLHAVKWSRIILDEAHYIKSRHCNTAKAVLALESSYRWALSGTPLQNRVGELYSLVR 470
+ S L V W +++DE H +K+ + +R L+GTPLQN +GE+Y+L+
Sbjct: 814 DSSHLRGVPWEVLVVDEGHRLKNSESKLFSLLNTFSFQHRVLLTGTPLQNNIGEMYNLLN 873
Query: 471 FLQ 473
FLQ
Sbjct: 874 FLQ 876
>AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator |
chr3:1802435-1807284 REVERSE LENGTH=1102
Length = 1102
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 406 DAVGQEKSFLHAVKWSRIILDEAHYIKSRHCNTAKAVL-ALESSYRWALSGTPLQNRVGE 464
D + ++K+FL ++W +I+DE H +K+ AK +L R L+GTP+QN + E
Sbjct: 511 DLIMRDKAFLKKIEWYYMIVDEGHRLKNHESALAKTLLTGYRIKRRLLLTGTPIQNSLQE 570
Query: 465 LYSLVRFL 472
L+SL+ FL
Sbjct: 571 LWSLLNFL 578
>AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr3:4065636-4073992 FORWARD LENGTH=2055
Length = 2055
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 408 VGQEKSFLHAVKWSRIILDEAHYIKSRHCNTAKAVLALESSYRWALSGTPLQNRVGELYS 467
V Q+ KW +ILDEAH IK+ + +L S R L+GTPLQN + EL+S
Sbjct: 646 VIQDSKMFKRKKWKYLILDEAHLIKNWKSQRWQTLLNFNSKRRILLTGTPLQNDLMELWS 705
Query: 468 LVRFLQIVPYSY 479
L+ FL +P+ +
Sbjct: 706 LMHFL--MPHVF 715
>AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 |
chr2:5544601-5555543 REVERSE LENGTH=1724
Length = 1724
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 42/67 (62%)
Query: 406 DAVGQEKSFLHAVKWSRIILDEAHYIKSRHCNTAKAVLALESSYRWALSGTPLQNRVGEL 465
+ V ++K+ L +KW +++DEAH +K+ A+L + + ++GTPLQN V EL
Sbjct: 740 EVVLKDKAVLSKIKWIYLMVDEAHRLKNSEAQLYTALLEFSTKNKLLITGTPLQNSVEEL 799
Query: 466 YSLVRFL 472
++L+ FL
Sbjct: 800 WALLHFL 806
>AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3574
Length = 3574
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 415 LHAVKWSRIILDEAHYIKSRHCNTAKAVLALESSYRWALSGTPLQNRVGELYSLVRFL 472
L + W II+DE H IK+ C + SS+R L+GTPLQN + EL++L+ FL
Sbjct: 873 LSKIHWHYIIIDEGHRIKNASCKLNADLKHYVSSHRLLLTGTPLQNNLEELWALLNFL 930
>AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3529
Length = 3529
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 415 LHAVKWSRIILDEAHYIKSRHCNTAKAVLALESSYRWALSGTPLQNRVGELYSLVRFL 472
L + W II+DE H IK+ C + SS+R L+GTPLQN + EL++L+ FL
Sbjct: 873 LSKIHWHYIIIDEGHRIKNASCKLNADLKHYVSSHRLLLTGTPLQNNLEELWALLNFL 930
>AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552343-18556669
REVERSE LENGTH=877
Length = 877
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 35/145 (24%)
Query: 203 LTMPLLRYQREWLAWALKQESSATRGGILADEMGMGKTIQAIALVLAKREFYPIGCEPDE 262
+T L +Q E ++W +++ + D+MG+GKT+QAI+ L+ +F
Sbjct: 47 VTATLKPHQVEGVSWLIQKYLLGVNVVLELDQMGLGKTLQAISF-LSYLKFR-------- 97
Query: 263 PSASPGSSRVLPLIKATLVICPVVAVTQWVNEINRFTLKGSTKVLVYHGAK--------- 313
PG LV+CP+ WV+EINRFT + +VL Y G K
Sbjct: 98 -QGLPG---------PFLVLCPLSVTDGWVSEINRFT--PNLEVLRYVGDKYCRLDMRKS 145
Query: 314 -----RGKSGEHFGEYDFVITTYSI 333
+ S HF +D ++TTY I
Sbjct: 146 MYDHVKKSSKGHFLPFDVLLTTYDI 170
>AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3543
Length = 3543
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%)
Query: 415 LHAVKWSRIILDEAHYIKSRHCNTAKAVLALESSYRWALSGTPLQNRVGELYSLVRFL 472
L + W II+DE H IK+ C + SS+R L+GTPLQN + EL++L+ FL
Sbjct: 873 LSKIHWHYIIIDEGHRIKNASCKLNADLKHYVSSHRLLLTGTPLQNNLEELWALLNFL 930
>AT2G44980.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552440-18556669
REVERSE LENGTH=851
Length = 851
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 29/139 (20%)
Query: 203 LTMPLLRYQREWLAWALKQESSATRGGILADEMGMGKTIQAIALVLAKREFYPIGCEPDE 262
+T L +Q E ++W +++ + D+MG+GKT+QAI+ L+ +F
Sbjct: 47 VTATLKPHQVEGVSWLIQKYLLGVNVVLELDQMGLGKTLQAISF-LSYLKFR-------- 97
Query: 263 PSASPGSSRVLPLIKATLVICPVVAVTQWVNEINRFTLKGSTKVLVYHGAKRGK------ 316
PG LV+CP+ WV+EINRFT + +VL Y G K +
Sbjct: 98 -QGLPG---------PFLVLCPLSVTDGWVSEINRFT--PNLEVLRYVGDKYCRLDMRKS 145
Query: 317 --SGEHFGEYDFVITTYSI 333
HF +D ++TTY I
Sbjct: 146 MYDHGHFLPFDVLLTTYDI 164
>AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1507
Length = 1507
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 411 EKSFLHAVKWSRIILDEAHYIKSRHCNTAKAVLALESSYRWALSGTPLQNRVGELYSLVR 470
++ + VKW ++LDEA IKS K +L+ R L+GTP+QN + EL++L+
Sbjct: 705 DEKYFRRVKWQYMVLDEAQAIKSSSSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLH 764
Query: 471 FL 472
F+
Sbjct: 765 FI 766