Miyakogusa Predicted Gene
- Lj5g3v1681450.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1681450.1 tr|Q7XRU6|Q7XRU6_ORYSJ OSJNBa0055C08.12 protein
OS=Oryza sativa subsp. japonica GN=OSJNBa0055C08.12
,45.61,3e-18,GLIOMA TUMOR SUPPRESSOR CANDIDATE REGION GENE
1,NULL,CUFF.55698.1
(240 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G17510.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 351 3e-97
AT3G03460.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 258 3e-69
>AT5G17510.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G03460.1); Has 1807 Blast hits to 1807 proteins
in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736;
Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes
- 339 (source: NCBI BLink). | chr5:5770518-5772343
REVERSE LENGTH=369
Length = 369
Score = 351 bits (900), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 180/251 (71%), Positives = 211/251 (84%), Gaps = 15/251 (5%)
Query: 1 MVRPGNPMELQMAYQDAWRVCHPDFKRPFSSLEDACERLLPYHVVADYEAEEDDRILDSD 60
++RP N +ELQ AYQDAWRVCHP+FK+PFSSLEDACERLLPYHVVADYEAEEDDRILDSD
Sbjct: 123 LMRPLNHIELQCAYQDAWRVCHPNFKQPFSSLEDACERLLPYHVVADYEAEEDDRILDSD 182
Query: 61 TTGQVLSRSQQWDNNIAAKIAEFTATFEKQALAFNIISQKRNLGEFRSEERLMIEQALLQ 120
TGQ LSRSQQWDNNIAAK+AEFTATFEKQALAFNII++KR +GEFRSEERLM+EQALLQ
Sbjct: 183 PTGQALSRSQQWDNNIAAKVAEFTATFEKQALAFNIITRKRAMGEFRSEERLMVEQALLQ 242
Query: 121 EEKRALM----------AGREAHEAKLRMAAMYQAEQARAESHSHAEMMSRAPIRGSALG 170
+E++AL+ AGREA EAKLRMAA+ QA Q S SHAE+M+R P+R +A+G
Sbjct: 243 DERKALIELKAEMDREKAGREAQEAKLRMAALAQAGQ----SQSHAEIMARNPLRANAVG 298
Query: 171 SQGSGDMMGHDMGEQDQGGHPGDMMNGWGNNAHREEKEPSEDFLND-EAENGDTGTQDGW 229
+QGS + H+MGEQ + +P +MMNGWGNN+ RE+KEPSEDFLND E ENG+TG Q+ W
Sbjct: 299 NQGSNIQLSHEMGEQGRNMNPDEMMNGWGNNSQREDKEPSEDFLNDEENENGETGEQENW 358
Query: 230 REVGEFDLNAR 240
RE GEFDLN+R
Sbjct: 359 REAGEFDLNSR 369
>AT3G03460.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G17510.1); Has 19732 Blast hits to 8747
proteins in 456 species: Archae - 0; Bacteria - 449;
Metazoa - 7438; Fungi - 2099; Plants - 1550; Viruses -
53; Other Eukaryotes - 8143 (source: NCBI BLink). |
chr3:823069-824485 REVERSE LENGTH=354
Length = 354
Score = 258 bits (658), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 147/254 (57%), Positives = 177/254 (69%), Gaps = 27/254 (10%)
Query: 1 MVRPGNPMELQMAYQDAWRVCHPDFKRPFSSLEDACERLLPYHVVADYEAEEDDRILDSD 60
++RP N +E+Q AYQDAWRVCHPDFKRPF+SLEDACERLLPYHVVADYEAEEDD I DS+
Sbjct: 114 LMRPSNQLEIQFAYQDAWRVCHPDFKRPFASLEDACERLLPYHVVADYEAEEDDSIFDSN 173
Query: 61 TTGQVLSRSQQWDNNIAAKIAEFTATFEKQALAFNIISQKRNLGEFRSEERLMIEQALLQ 120
TT Q L R QQWDNNIAAK+AEFTATFE Q AF+ I QKR+ G+ R EERLM+EQ LL
Sbjct: 174 TTSQTLPRCQQWDNNIAAKVAEFTATFEGQVQAFDRIIQKRSDGD-RVEERLMMEQVLLN 232
Query: 121 EEKRALM-AGRE--AHEAKLRMAAMYQAEQARA---ESHSHAEMMSRAPIRGSALGSQGS 174
+E+ A + RE A +A+LRMAA+ QA SHAEMM+R P+R +A+G+
Sbjct: 233 DERNACIQLDREMKAQDARLRMAALAQAAGQARAEESQQSHAEMMARNPLRANAIGNH-- 290
Query: 175 GDMMGHDMGEQDQGGHPGDM---MNGWG-----NNAHREEKEPSEDFLNDEAENGDTGTQ 226
GEQ + +P +M MNGWG NN+ +EEKEP EDFLNDE + G
Sbjct: 291 --------GEQGRNMNPNEMMLLMNGWGNNNNNNNSQKEEKEPLEDFLNDEE--NENGEH 340
Query: 227 DGWREVGEFDLNAR 240
+ WR G+FDLN R
Sbjct: 341 EKWRRSGDFDLNIR 354