Miyakogusa Predicted Gene

Lj5g3v1631040.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1631040.1 Non Chatacterized Hit- tr|D8SPD6|D8SPD6_SELML
Putative uncharacterized protein OS=Selaginella
moelle,53.25,6e-18,MutL_C,MutL, C-terminal, dimerisation;
DNA_mis_repair,DNA mismatch repair protein, C-terminal; DNA
M,CUFF.55655.1
         (669 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02460.1 | Symbols: PMS1 | DNA mismatch repair protein, putat...   524   e-148
AT4G35520.1 | Symbols: MLH3, ATMLH3 | MUTL protein homolog 3 | c...    67   4e-11

>AT4G02460.1 | Symbols: PMS1 | DNA mismatch repair protein, putative
           | chr4:1076306-1080510 REVERSE LENGTH=923
          Length = 923

 Score =  524 bits (1349), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 309/659 (46%), Positives = 413/659 (62%), Gaps = 51/659 (7%)

Query: 1   MPKVGKLVNELYKSANSKQYPIAIMNFTVPTRAFDVNVTPDKRKIFFSEETALLQALREG 60
           MPKV KLVNELYK  +S++YP+ I++F VP  A D+NVTPDKRK+FFS+ET+++ +LREG
Sbjct: 284 MPKVSKLVNELYKDTSSRKYPVTILDFIVPGGACDLNVTPDKRKVFFSDETSVIGSLREG 343

Query: 61  LQEIYSSSDVCYSVNEIMQPAVNEDCVELRSTKRKSLVVEKPPSLNDNVPQEEHYSECKN 120
           L EIYSSS+  Y VN   + +   D   + S ++KS ++ +   L+              
Sbjct: 344 LNEIYSSSNASYIVNRFEENSEQPDKAGVSSFQKKSNLLSEGIVLD-------------- 389

Query: 121 GITSHDEYNANCNKDSVSHIGHKEKHITDSKNASESVNDDQCSHSEEGLIHENDGSLMGQ 180
            ++S         K++ S    +E  I +S    +   + +   +++G     +GSL   
Sbjct: 390 -VSSKTRLGEAIEKENPS---LREVEIDNSSPMEKFKFEIKACGTKKG-----EGSLSVH 440

Query: 181 EFTLRAHTTSKDYNCRRRLECASSLQGTLVSRAVESGGTSNQYSYSHSRHVQSTLNGFVS 240
           + T    T SK        E  +     L SR               S   QSTLN FV+
Sbjct: 441 DVTHLDKTPSKGLPQLNVTEKVTDASKDLSSR---------------SSFAQSTLNTFVT 485

Query: 241 VNKRNRDSSITALSEVPVLRNQASHYQLKTAKTETRDLITRSSVNFDQVGGTSKLSKIES 300
           + KR  ++  T LSE PVLRNQ S Y+++ +K E R L +R  V  DQ+     +SK E 
Sbjct: 486 MGKRKHENISTILSETPVLRNQTSSYRVEKSKFEVRALASRCLVEGDQLDDMV-ISK-ED 543

Query: 301 LQQLKPDNILHINEYSVSLRGDTTDR-ESEMELDQENSASLADSAPATPSSNDLINTSEH 359
           +   + D+ L  N  S   + D  +R E E E         +D+   T +  D+   SE 
Sbjct: 544 MTPSERDSELG-NRISPGTQADNVERHEREHEKPIRFEEPTSDN---TLTKGDVERVSED 599

Query: 360 VLVSDPPLHSSPVCLDSP-KSSGQKICSNMHFSFQDLKNKREKRLSLMRSSKY--KC-GK 415
                 PL S    LDSP +S+G K+ S + FSFQ+L+ +R +RLS ++S+ Y  KC   
Sbjct: 600 NPRCSQPLRSVATVLDSPAQSTGPKMFSTLEFSFQNLRTRRLERLSRLQSTGYVSKCMNT 659

Query: 416 ANVKSHYMAATLELSQPEIEQQKERILAAAATELERFFKKEDFSRMKVIGQFNLGFIIGK 475
              K  + AATLELSQP+ E++K R LAAA +ELER F+KEDF RM+V+GQFNLGFII K
Sbjct: 660 PQPKKCFAAATLELSQPDDEERKARALAAATSELERLFRKEDFRRMQVLGQFNLGFIIAK 719

Query: 476 LDHDLFIVDQHAADEKYNFERLSQSTILNQQPLIRPIRLELSPEEEIVASMHMDIIRKNG 535
           L+ DLFIVDQHAADEK+NFE L++ST+LNQQPL++P+ LELSPEEE+   MHMDIIR+NG
Sbjct: 720 LERDLFIVDQHAADEKFNFEHLARSTVLNQQPLLQPLNLELSPEEEVTVLMHMDIIRENG 779

Query: 536 FTLEEDPNAPPGCRYKLKSVPFSKNTMFGIEDVKELISSLSDGDGDVECSTIGSYKTDTS 595
           F LEE+P+APPG  ++L+++P+SKN  FG+ED+K+LIS+L D  G  ECS   SYKT  +
Sbjct: 780 FLLEENPSAPPGKHFRLRAIPYSKNITFGVEDLKDLISTLGDNHG--ECSVASSYKTSKT 837

Query: 596 DSICPSRVRAMLASRACRSSIMIGDALGRNEMQKVVEHLAGLKSPWNCPHGRPTMRHLV 654
           DSICPSRVRAMLASRACRSS+MIGD L +NEMQK+VEHLA L+SPWNCPHGRPTMRHLV
Sbjct: 838 DSICPSRVRAMLASRACRSSVMIGDPLRKNEMQKIVEHLADLESPWNCPHGRPTMRHLV 896


>AT4G35520.1 | Symbols: MLH3, ATMLH3 | MUTL protein homolog 3 |
            chr4:16865488-16871527 FORWARD LENGTH=1169
          Length = 1169

 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 96/235 (40%), Gaps = 55/235 (23%)

Query: 462  KVIGQFNLGFIIGKLDHDLFIVDQHAADEKYNFERL-----------------SQSTILN 504
            KV+ Q +  +I       + IVDQHAADE+   E L                  Q   +N
Sbjct: 922  KVLQQVDKKYIPIVACGTVAIVDQHAADERIRLEELRTKVLAGKARTVTYLSADQELFIN 981

Query: 505  QQPLIRPIRLELSPE--EEIVASMHMDI----------------IRKNGFTLEEDPNAPP 546
               LI  + L++ PE   +++ S    I                 +KN   ++  P    
Sbjct: 982  DALLIFVLTLKVLPEMGYQLLQSYSEQIRDWGWICNITVEGSTSFKKNMSIIQRKPTP-- 1039

Query: 547  GCRYKLKSVPFSKNTMFGIEDVKELISSLSDGDGDVECSTIGSYKTDTSDSICPSRVRAM 606
                 L +VP          D+ E +  L+D DG              S +I PS +R +
Sbjct: 1040 ---ITLNAVPCILGVNLSDVDLLEFLQQLADTDG--------------SSTIPPSVLR-V 1081

Query: 607  LASRACRSSIMIGDALGRNEMQKVVEHLAGLKSPWNCPHGRPTMRHLVDLTKLHQ 661
            L S+ACR +IM GD+L  +E   +++ L      + C HGRPT   LVDL  LH+
Sbjct: 1082 LNSKACRGAIMFGDSLLPSECSLIIDGLKQTSLCFQCAHGRPTTVPLVDLKALHK 1136