Miyakogusa Predicted Gene

Lj5g3v1631030.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1631030.1 Non Chatacterized Hit- tr|A5APC0|A5APC0_VITVI
Putative uncharacterized protein OS=Vitis vinifera GN=,85.71,0,no
description,NULL; LSM,Ribonucleoprotein LSM domain; SMALL NUCLEAR
RIBONUCLEOPROTEIN SM,NULL; snRN,CUFF.55657.1
         (139 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27720.1 | Symbols: emb1644 | Small nuclear ribonucleoprotein...   182   6e-47
AT1G20580.1 | Symbols:  | Small nuclear ribonucleoprotein family...    58   2e-09
AT1G76300.1 | Symbols: SmD3 | snRNP core protein SMD3 | chr1:286...    55   1e-08

>AT5G27720.1 | Symbols: emb1644 | Small nuclear ribonucleoprotein
          family protein | chr5:9815904-9817304 FORWARD
          LENGTH=129
          Length = 129

 Score =  182 bits (462), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 88/92 (95%), Positives = 89/92 (96%), Gaps = 1/92 (1%)

Query: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKEGTEFWRMPECY 60
          MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSK+G  FWRMPECY
Sbjct: 1  MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECY 60

Query: 61 IRGNTIKYLRVPDEVIDKVQEETKTRTDRKPP 92
          IRGNTIKYLRVPDEVIDKVQEE KTRTDRKPP
Sbjct: 61 IRGNTIKYLRVPDEVIDKVQEE-KTRTDRKPP 91


>AT1G20580.1 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr1:7128979-7130371 FORWARD LENGTH=131
          Length = 131

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/72 (34%), Positives = 46/72 (63%), Gaps = 1/72 (1%)

Query: 2  LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKEGTEFWRMPECYI 61
          +P+ LL  A GH + VELK+GE Y G ++ C+   N  L ++  T+K+G +  ++   +I
Sbjct: 7  IPVKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDG-KVSQLEHVFI 65

Query: 62 RGNTIKYLRVPD 73
          RG+ ++++ +PD
Sbjct: 66 RGSKVRFMVIPD 77


>AT1G76300.1 | Symbols: SmD3 | snRNP core protein SMD3 |
          chr1:28625957-28627080 FORWARD LENGTH=128
          Length = 128

 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 2  LPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKEGTEFWRMPECYI 61
          +P+ LL  + GH + VE+K+GE Y G ++ C+   N  L  +  T+K+G +  ++   +I
Sbjct: 7  IPVKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDG-KVSQLEHVFI 65

Query: 62 RGNTIKYLRVPD 73
          RG+ +++L +PD
Sbjct: 66 RGSLVRFLVIPD 77