Miyakogusa Predicted Gene

Lj5g3v1630000.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1630000.1 tr|G7KSP4|G7KSP4_MEDTR E3 ubiquitin-protein
ligase BAH1 OS=Medicago truncatula GN=MTR_7g108850 PE=4
,80.77,3e-17,ZF_RING_1,Zinc finger, RING-type, conserved site; Ring
finger,Zinc finger, RING-type; ZF_RING_2,Zinc,CUFF.55653.1
         (323 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G02860.1 | Symbols: NLA, BAH1 | SPX (SYG1/Pho81/XPR1) domain-...   433   e-122
AT1G02860.2 | Symbols: NLA | SPX (SYG1/Pho81/XPR1) domain-contai...   424   e-119
AT2G38920.1 | Symbols:  | SPX (SYG1/Pho81/XPR1) domain-containin...   253   1e-67
AT2G38920.2 | Symbols:  | SPX (SYG1/Pho81/XPR1) domain-containin...   250   1e-66
AT2G38920.3 | Symbols:  | SPX (SYG1/Pho81/XPR1) domain-containin...   221   5e-58

>AT1G02860.1 | Symbols: NLA, BAH1 | SPX (SYG1/Pho81/XPR1)
           domain-containing protein | chr1:635474-637083 FORWARD
           LENGTH=335
          Length = 335

 Score =  433 bits (1113), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 214/336 (63%), Positives = 259/336 (77%), Gaps = 14/336 (4%)

Query: 1   MKFCKTYQEYMQAQEQKK-LPGVGFXXXXXXXXXCRRDSQ----SLHESLGIKSCPHQCP 55
           MKFCK Y+EYMQ Q++KK LPGVGF         CRR+      S  +++   +C  +CP
Sbjct: 1   MKFCKKYEEYMQGQKEKKNLPGVGFKKLKKILKRCRRNHVPSRISFTDAIN-HNCSRECP 59

Query: 56  VCDGTFFPSLLNEMSEILGCFNHRAQKLLQLHLASGFRKYILKLKGKF-KGNHTVLVQEG 114
           VCDGTFFP LL EM +++G FN  AQKLL+LHLASGF K +  L+G   K +H  L+QEG
Sbjct: 60  VCDGTFFPELLKEMEDVVGWFNEHAQKLLELHLASGFTKCLTWLRGNSRKKDHHGLIQEG 119

Query: 115 KDLVTYALINAIAIRKILKKYDKIHYSKQGQLFKSQLQTMHKEILQSPWLCELMALHINL 174
           KDLV YALINA+AIRKILKKYDKIH S+QGQ FK+Q+Q M  EILQSPWLCELMA HINL
Sbjct: 120 KDLVNYALINAVAIRKILKKYDKIHESRQGQAFKTQVQKMRIEILQSPWLCELMAFHINL 179

Query: 175 RETKVKSKKA--AP-----ALLDGCSLAFTDGKPSLTCEIFDSIKIDIDLTCSICMDTVF 227
           +E+K +S     +P     AL DGC+L F DGKP L+CE+ DS+K+DIDLTCSIC+DTVF
Sbjct: 180 KESKKESGATITSPPPPVHALFDGCALTFDDGKPLLSCELSDSVKVDIDLTCSICLDTVF 239

Query: 228 DPVSLTCGHIFCYSCACSAASVTIVDGLKAADPKEKCPLCREGGVYEDAVHLEELNILLG 287
           DP+SLTCGHI+CY CACSAASV +VDGLK A+  EKCPLCRE GVY+ AVHL+ELNILL 
Sbjct: 240 DPISLTCGHIYCYMCACSAASVNVVDGLKTAEATEKCPLCREDGVYKGAVHLDELNILLK 299

Query: 288 RSCKDYWEERLQMERVERVKQAKEHWEMQCRNFMGV 323
           RSC+DYWEER + ER ER++QAKE+W+ QCR+F G+
Sbjct: 300 RSCRDYWEERRKTERAERLQQAKEYWDYQCRSFTGI 335


>AT1G02860.2 | Symbols: NLA | SPX (SYG1/Pho81/XPR1)
           domain-containing protein | chr1:635474-637083 FORWARD
           LENGTH=333
          Length = 333

 Score =  424 bits (1089), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 212/336 (63%), Positives = 257/336 (76%), Gaps = 16/336 (4%)

Query: 1   MKFCKTYQEYMQAQEQKK-LPGVGFXXXXXXXXXCRRDSQ----SLHESLGIKSCPHQCP 55
           MKFCK Y+EYMQ Q++KK LPGVGF         CRR+      S  +++   +C  +CP
Sbjct: 1   MKFCKKYEEYMQGQKEKKNLPGVGFKKLKKILKRCRRNHVPSRISFTDAIN-HNCSRECP 59

Query: 56  VCDGTFFPSLLNEMSEILGCFNHRAQKLLQLHLASGFRKYILKLKGKF-KGNHTVLVQEG 114
           VCDGTFFP LL EM +++G FN  AQKLL+LHLASGF K +  L+G   K +H  L+QEG
Sbjct: 60  VCDGTFFPELLKEMEDVVGWFNEHAQKLLELHLASGFTKCLTWLRGNSRKKDHHGLIQEG 119

Query: 115 KDLVTYALINAIAIRKILKKYDKIHYSKQGQLFKSQLQTMHKEILQSPWLCELMALHINL 174
           KDLV YALINA+AIRKILKKYDKIH S+QGQ FK+Q+Q M  EILQSPWLCELMA HINL
Sbjct: 120 KDLVNYALINAVAIRKILKKYDKIHESRQGQAFKTQVQKMRIEILQSPWLCELMAFHINL 179

Query: 175 RETKVKSKKA--AP-----ALLDGCSLAFTDGKPSLTCEIFDSIKIDIDLTCSICMDTVF 227
           +E+K +S     +P     AL DGC+L F DGKP L+CE+ DS+K+DIDLTCSIC+DTVF
Sbjct: 180 KESKKESGATITSPPPPVHALFDGCALTFDDGKPLLSCELSDSVKVDIDLTCSICLDTVF 239

Query: 228 DPVSLTCGHIFCYSCACSAASVTIVDGLKAADPKEKCPLCREGGVYEDAVHLEELNILLG 287
           DP+SLTCGHI+CY CACSAASV +VDGLK A+  EKCPLCRE GVY+ AVHL+ELNILL 
Sbjct: 240 DPISLTCGHIYCYMCACSAASVNVVDGLKTAEATEKCPLCREDGVYKGAVHLDELNILLK 299

Query: 288 RSCKDYWEERLQMERVERVKQAKEHWEMQCRNFMGV 323
           R  +DYWEER + ER ER++QAKE+W+ QCR+F G+
Sbjct: 300 R--RDYWEERRKTERAERLQQAKEYWDYQCRSFTGI 333


>AT2G38920.1 | Symbols:  | SPX (SYG1/Pho81/XPR1) domain-containing
           protein / zinc finger (C3HC4-type RING finger)
           protein-related | chr2:16248420-16250585 REVERSE
           LENGTH=335
          Length = 335

 Score =  253 bits (647), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 126/269 (46%), Positives = 179/269 (66%), Gaps = 2/269 (0%)

Query: 54  CPVCDGTFFPSLLNEMSEILGCFNHRAQKLLQLHLASGFRKYILKLKGKFKGNHTVLVQE 113
           CP CD  FF  L+ E ++I G F  R + LL LH+A+G ++Y+++L+  F      LVQE
Sbjct: 68  CPWCDQMFFEELMKEATDIAGFFRSRVRHLLHLHVATGMQRYMIRLRRCFTDEKQALVQE 127

Query: 114 GKDLVTYALINAIAIRKILKKYDKIHYSKQGQLFKSQLQTMHKEILQSPWLCELMALHIN 173
           G+ L+ Y  +NAIAIRKILKKYDK+H S+ G+ FK +++    E+L SPWL EL A ++N
Sbjct: 128 GQILIQYITMNAIAIRKILKKYDKVHSSENGKNFKLKMRAERIELLHSPWLIELGAFYLN 187

Query: 174 LRETKVKSKKAAPALLDGCSLAFTDGKPSLTCEIFDSIKIDIDLTCSICMDTVFDPVSLT 233
                V + K +   +   +L   + +P L   + +SI+++ DLTC+IC++TVF+P +L 
Sbjct: 188 SGLDNVGNFKNSFGRVACENL--NEDQPVLKLMLPNSIELEYDLTCAICLETVFNPYALK 245

Query: 234 CGHIFCYSCACSAASVTIVDGLKAADPKEKCPLCREGGVYEDAVHLEELNILLGRSCKDY 293
           CGHIFC SCACSAASV I  G+KAA    KCP+CRE GVY +AVH+ EL++LL    K+Y
Sbjct: 246 CGHIFCNSCACSAASVLIFQGIKAAPRHSKCPICREAGVYAEAVHMIELHLLLKTRSKEY 305

Query: 294 WEERLQMERVERVKQAKEHWEMQCRNFMG 322
           W+ER+  ER E VKQ+K  W  Q ++ +G
Sbjct: 306 WKERMMNERSEMVKQSKMFWNEQTKHMIG 334


>AT2G38920.2 | Symbols:  | SPX (SYG1/Pho81/XPR1) domain-containing
           protein / zinc finger (C3HC4-type RING finger)
           protein-related | chr2:16248420-16250585 REVERSE
           LENGTH=334
          Length = 334

 Score =  250 bits (638), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 126/269 (46%), Positives = 181/269 (67%), Gaps = 3/269 (1%)

Query: 54  CPVCDGTFFPSLLNEMSEILGCFNHRAQKLLQLHLASGFRKYILKLKGKFKGNHTVLVQE 113
           CP CD  FF  L+ E ++I G F  R + LL LH+A+G ++Y+++L+  F      LVQE
Sbjct: 68  CPWCDQMFFEELMKEATDIAGFFRSRVRHLLHLHVATGMQRYMIRLRRCFTDEKQALVQE 127

Query: 114 GKDLVTYALINAIAIRKILKKYDKIHYSKQGQLFKSQLQTMHKEILQSPWLCELMALHIN 173
           G+ L+ Y  +NAIAIRKILKKYDK+H S+ G+ FK +++    E+L SPWL EL A ++N
Sbjct: 128 GQILIQYITMNAIAIRKILKKYDKVHSSENGKNFKLKMRAERIELLHSPWLIELGAFYLN 187

Query: 174 LRETKVKSKKAAPALLDGCSLAFTDGKPSLTCEIFDSIKIDIDLTCSICMDTVFDPVSLT 233
                V + K +   +   +L   + +P L   + +SI+++ DLTC+IC++TVF+P +L 
Sbjct: 188 SGLDNVGNFKNSFGRVACENL--NEDQPVLKLMLPNSIELEYDLTCAICLETVFNPYALK 245

Query: 234 CGHIFCYSCACSAASVTIVDGLKAADPKEKCPLCREGGVYEDAVHLEELNILLGRSCKDY 293
           CGHIFC SCACSAASV I  G+KAA    KCP+CRE GVY +AVH+ EL++LL ++ K+Y
Sbjct: 246 CGHIFCNSCACSAASVLIFQGIKAAPRHSKCPICREAGVYAEAVHMIELHLLL-KTRKEY 304

Query: 294 WEERLQMERVERVKQAKEHWEMQCRNFMG 322
           W+ER+  ER E VKQ+K  W  Q ++ +G
Sbjct: 305 WKERMMNERSEMVKQSKMFWNEQTKHMIG 333


>AT2G38920.3 | Symbols:  | SPX (SYG1/Pho81/XPR1) domain-containing
           protein / zinc finger (C3HC4-type RING finger)
           protein-related | chr2:16248490-16250585 REVERSE
           LENGTH=309
          Length = 309

 Score =  221 bits (563), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 111/233 (47%), Positives = 156/233 (66%), Gaps = 2/233 (0%)

Query: 54  CPVCDGTFFPSLLNEMSEILGCFNHRAQKLLQLHLASGFRKYILKLKGKFKGNHTVLVQE 113
           CP CD  FF  L+ E ++I G F  R + LL LH+A+G ++Y+++L+  F      LVQE
Sbjct: 68  CPWCDQMFFEELMKEATDIAGFFRSRVRHLLHLHVATGMQRYMIRLRRCFTDEKQALVQE 127

Query: 114 GKDLVTYALINAIAIRKILKKYDKIHYSKQGQLFKSQLQTMHKEILQSPWLCELMALHIN 173
           G+ L+ Y  +NAIAIRKILKKYDK+H S+ G+ FK +++    E+L SPWL EL A ++N
Sbjct: 128 GQILIQYITMNAIAIRKILKKYDKVHSSENGKNFKLKMRAERIELLHSPWLIELGAFYLN 187

Query: 174 LRETKVKSKKAAPALLDGCSLAFTDGKPSLTCEIFDSIKIDIDLTCSICMDTVFDPVSLT 233
                V + K +   +  C     + +P L   + +SI+++ DLTC+IC++TVF+P +L 
Sbjct: 188 SGLDNVGNFKNSFGRV-ACE-NLNEDQPVLKLMLPNSIELEYDLTCAICLETVFNPYALK 245

Query: 234 CGHIFCYSCACSAASVTIVDGLKAADPKEKCPLCREGGVYEDAVHLEELNILL 286
           CGHIFC SCACSAASV I  G+KAA    KCP+CRE GVY +AVH+ EL++LL
Sbjct: 246 CGHIFCNSCACSAASVLIFQGIKAAPRHSKCPICREAGVYAEAVHMIELHLLL 298