Miyakogusa Predicted Gene

Lj5g3v1627890.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1627890.1 Non Chatacterized Hit- tr|I3SBV7|I3SBV7_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=4 SV=1,99.13,0,seg,NULL;
Ribosomal_L22e,Ribosomal protein L22e; 60S RIBOSOMAL PROTEIN
L22,Ribosomal protein L22e,CUFF.55660.1
         (115 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05560.3 | Symbols:  | Ribosomal L22e protein family | chr3:1...   174   1e-44
AT3G05560.2 | Symbols:  | Ribosomal L22e protein family | chr3:1...   174   1e-44
AT3G05560.1 | Symbols:  | Ribosomal L22e protein family | chr3:1...   174   1e-44
AT5G27770.1 | Symbols:  | Ribosomal L22e protein family | chr5:9...   147   1e-36
AT1G02830.1 | Symbols:  | Ribosomal L22e protein family | chr1:6...   138   7e-34

>AT3G05560.3 | Symbols:  | Ribosomal L22e protein family |
           chr3:1614641-1615204 FORWARD LENGTH=124
          Length = 124

 Score =  174 bits (441), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 84/112 (75%), Positives = 92/112 (82%)

Query: 4   AKGKKKATSFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVSREKSKIPV 63
           AKGKKK  SF IDC+KPV+DKIM+IASLEKFLQERIKVGGKAGALGDSVT++REKSKI V
Sbjct: 9   AKGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTITREKSKITV 68

Query: 64  TSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRNVYELRYFNIAENEG 115
           T+D  FS              HNVRDWLRVIA+NKDRN+YELRYFNIAENEG
Sbjct: 69  TADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAENEG 120


>AT3G05560.2 | Symbols:  | Ribosomal L22e protein family |
           chr3:1614641-1615204 FORWARD LENGTH=124
          Length = 124

 Score =  174 bits (441), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 84/112 (75%), Positives = 92/112 (82%)

Query: 4   AKGKKKATSFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVSREKSKIPV 63
           AKGKKK  SF IDC+KPV+DKIM+IASLEKFLQERIKVGGKAGALGDSVT++REKSKI V
Sbjct: 9   AKGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTITREKSKITV 68

Query: 64  TSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRNVYELRYFNIAENEG 115
           T+D  FS              HNVRDWLRVIA+NKDRN+YELRYFNIAENEG
Sbjct: 69  TADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAENEG 120


>AT3G05560.1 | Symbols:  | Ribosomal L22e protein family |
           chr3:1614641-1615204 FORWARD LENGTH=124
          Length = 124

 Score =  174 bits (441), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 84/112 (75%), Positives = 92/112 (82%)

Query: 4   AKGKKKATSFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVSREKSKIPV 63
           AKGKKK  SF IDC+KPV+DKIM+IASLEKFLQERIKVGGKAGALGDSVT++REKSKI V
Sbjct: 9   AKGKKKGVSFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVTITREKSKITV 68

Query: 64  TSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRNVYELRYFNIAENEG 115
           T+D  FS              HNVRDWLRVIA+NKDRN+YELRYFNIAENEG
Sbjct: 69  TADGQFSKRYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYFNIAENEG 120


>AT5G27770.1 | Symbols:  | Ribosomal L22e protein family |
           chr5:9836166-9837113 FORWARD LENGTH=124
          Length = 124

 Score =  147 bits (371), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 70/97 (72%), Positives = 79/97 (81%)

Query: 12  SFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVSREKSKIPVTSDSNFSX 71
           SF IDC+KPV+DKIM+IASLEKFLQERIKVGGKAGALGDSV+++REKSKI VT+D  FS 
Sbjct: 17  SFTIDCSKPVDDKIMEIASLEKFLQERIKVGGKAGALGDSVSITREKSKITVTADGQFSK 76

Query: 72  XXXXXXXXXXXXXHNVRDWLRVIASNKDRNVYELRYF 108
                        HNVRDWLRVIA+NKDRN+YELRYF
Sbjct: 77  RYLKYLTKKYLKKHNVRDWLRVIAANKDRNLYELRYF 113


>AT1G02830.1 | Symbols:  | Ribosomal L22e protein family |
           chr1:625145-625608 REVERSE LENGTH=127
          Length = 127

 Score =  138 bits (348), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 68/109 (62%), Positives = 83/109 (76%)

Query: 2   SGAKGKKKATSFVIDCAKPVEDKIMDIASLEKFLQERIKVGGKAGALGDSVTVSREKSKI 61
           SGA  KKK  SFVIDC+KPV+D I++IA+LEKFLQERIKV GKAGALG+SV+++R   KI
Sbjct: 9   SGAGAKKKGVSFVIDCSKPVDDTILEIATLEKFLQERIKVRGKAGALGNSVSITRYNGKI 68

Query: 62  PVTSDSNFSXXXXXXXXXXXXXXHNVRDWLRVIASNKDRNVYELRYFNI 110
            V ++SNFS              +N+RDWLRVIASNKD+NVYE+RYF I
Sbjct: 69  NVNANSNFSKRYLKYLTKKYLKKYNLRDWLRVIASNKDKNVYEVRYFRI 117