Miyakogusa Predicted Gene

Lj5g3v1616850.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1616850.1 tr|Q9FSQ5|Q9FSQ5_ORYSA H0423H10.8 protein
OS=Oryza sativa GN=H0423H10.8 PE=4
SV=2,75,2e-19,CAMSAP_CH,Calmodulin-regulated spectrin-associated
protein, CH domain; MICROTUBULE-ASSOCIATED PROTEI,CUFF.55633.1
         (108 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G47690.1 | Symbols: ATEB1A, EB1A, ATEB1H2 | microtubule end b...   103   2e-23
AT5G62500.1 | Symbols: ATEB1B, ATEB1, EB1B | end binding protein...    95   1e-20
AT5G67270.1 | Symbols: ATEB1C, EB1C, ATEB1H1 | end binding prote...    94   2e-20

>AT3G47690.1 | Symbols: ATEB1A, EB1A, ATEB1H2 | microtubule end
          binding protein EB1A | chr3:17581353-17583346 FORWARD
          LENGTH=276
          Length = 276

 Score =  103 bits (257), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/70 (72%), Positives = 56/70 (80%)

Query: 1  MLTTFILRIILVCSHIEEAASGDVQCQMIDMTHPRVVPMHKVNFDAKMEYDKIQNYKILQ 60
          +LT    R+ L  S +EEAASG VQCQM+DMT P VVPMHKVNFDAK EYD IQNYK+LQ
Sbjct: 19 ILTWINDRLHLNLSRVEEAASGAVQCQMLDMTFPGVVPMHKVNFDAKNEYDMIQNYKVLQ 78

Query: 61 DVFNKLKIDK 70
          DVFNKLKI K
Sbjct: 79 DVFNKLKITK 88


>AT5G62500.1 | Symbols: ATEB1B, ATEB1, EB1B | end binding protein
          1B | chr5:25092929-25095006 FORWARD LENGTH=293
          Length = 293

 Score = 94.7 bits (234), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/63 (71%), Positives = 52/63 (82%)

Query: 8  RIILVCSHIEEAASGDVQCQMIDMTHPRVVPMHKVNFDAKMEYDKIQNYKILQDVFNKLK 67
          R+ L  S IEEAASG VQCQM+DMT P VVPMHKVNF+AK EY+ IQNYK++Q+VF KLK
Sbjct: 26 RLHLNLSRIEEAASGAVQCQMLDMTFPGVVPMHKVNFEAKNEYEMIQNYKVMQEVFTKLK 85

Query: 68 IDK 70
          I K
Sbjct: 86 ITK 88


>AT5G67270.1 | Symbols: ATEB1C, EB1C, ATEB1H1 | end binding
          protein 1C | chr5:26840248-26841984 REVERSE LENGTH=329
          Length = 329

 Score = 93.6 bits (231), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 41/57 (71%), Positives = 46/57 (80%)

Query: 14 SHIEEAASGDVQCQMIDMTHPRVVPMHKVNFDAKMEYDKIQNYKILQDVFNKLKIDK 70
          S +EEA SG V CQ++D  HP  VPMHKVNFDAK EY+ IQNYK+LQDVFNKLKI K
Sbjct: 32 SKVEEACSGAVHCQLMDSVHPGTVPMHKVNFDAKSEYEMIQNYKVLQDVFNKLKITK 88