Miyakogusa Predicted Gene

Lj5g3v1616840.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1616840.1 Non Chatacterized Hit- tr|H3E8L7|H3E8L7_PRIPA
Uncharacterized protein OS=Pristionchus pacificus
GN=P,36.78,2e-16,Na_Ca_ex,Sodium/calcium exchanger membrane region;
seg,NULL; SODIUM/CALCIUM EXCHANGER,NULL,CUFF.55632.1
         (529 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G47600.1 | Symbols: ATMHX, MHX1, ATMHX1, MHX | magnesium/prot...   724   0.0  

>AT2G47600.1 | Symbols: ATMHX, MHX1, ATMHX1, MHX | magnesium/proton
           exchanger | chr2:19524518-19526828 REVERSE LENGTH=539
          Length = 539

 Score =  724 bits (1868), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/531 (68%), Positives = 421/531 (79%), Gaps = 12/531 (2%)

Query: 5   SSIMGHEKCQRYLIFNAETALGDYFRVFLYFLGLAYCFLGLSAITARFFKSMENVVKHTR 64
           S ++GH +C+ + +F  E  L D  R  LYFLGLAYCF+GLSAITARFFKSMENVVKH+R
Sbjct: 15  SKVLGHLRCENFFLFPGENTLSDGLRGVLYFLGLAYCFIGLSAITARFFKSMENVVKHSR 74

Query: 65  EVVEVDPVTKIEVIRHEKVWNYTIADISLLAFGTSFPQISLATIDAIQXXXXXXXXXXXX 124
           +VV +DP+TK EVI ++KVWN+TIADISLLAFGTSFPQISLATIDAI+            
Sbjct: 75  KVVTIDPITKAEVITYKKVWNFTIADISLLAFGTSFPQISLATIDAIRNMGERYAGGLGP 134

Query: 125 XTLVGSAAFDLFPIHAVCVVVPKAGELKKIADLGVWLVELFWSFWAYIWLYIILEVWTPN 184
            TLVGSAAFDLFPIHAVCVVVPKAGELKKI+DLGVWLVEL WSFWAYIWLYIILEVW+PN
Sbjct: 135 GTLVGSAAFDLFPIHAVCVVVPKAGELKKISDLGVWLVELVWSFWAYIWLYIILEVWSPN 194

Query: 185 VVTLWEAXXXXXXXXXXXTHAYAQDKRWPYISLPIARDERPEDWVPEETPCFKQKSHEKV 244
           V+TL EA            HAYAQDKRWPY+SLP++R +RPE+WVPEE    K  +   V
Sbjct: 195 VITLVEALLTVLQYGLLLVHAYAQDKRWPYLSLPMSRGDRPEEWVPEEIDTSKDDNDNDV 254

Query: 245 E--YSEIIQ--VNEEDRDTVDIFSIHSSNPRDT--TMYTRVPQIDGIIENSDKAKDSMLE 298
              YS+  Q  V    R+ VDIFSIHS+N  DT  T +T             KAK+S + 
Sbjct: 255 HDVYSDAAQDAVESGSRNIVDIFSIHSAN-NDTGITYHTVADTPPDSATKKGKAKNSTVF 313

Query: 299 DTHLLTIWGQQFVDALMLESHESKKMNNVYLRIAQICWQLLLLPWRFLFAFVPPCHIAHG 358
           D     IW  QFVDA+ LE+ ESKK++++YLRIA+  W LLL PW+ LFAFVPPC+IAHG
Sbjct: 314 D-----IWKHQFVDAITLETSESKKVDSIYLRIAKSFWHLLLAPWKLLFAFVPPCNIAHG 368

Query: 359 WISFICSLLFISGIAYIVTKLTDLISCVTGINAYVIAFTALASGTSWPDLVASKIAAERQ 418
           WI+FICSLLFISG+A++VT+ TDLISCVTGIN YVIAFTALASGTSWPDLVASKIAAERQ
Sbjct: 369 WIAFICSLLFISGVAFVVTRFTDLISCVTGINPYVIAFTALASGTSWPDLVASKIAAERQ 428

Query: 419 KTADSAIANITCSNSVNIYVGIGVPWLIDTLYNFIAYREPLHIQNAGGLSFSLIVFFCTS 478
            TADSAIANITCSNSVNIYVGIGVPWLI+T+YN+ AYREPL+I+NA GLSFSL++FF TS
Sbjct: 429 LTADSAIANITCSNSVNIYVGIGVPWLINTVYNYFAYREPLYIENAKGLSFSLLIFFATS 488

Query: 479 VGCISVLVVRRLVFGAELGGPRLWAWITAVFFMFLWIIFVVLSSLKVSGFI 529
           VGCI VLV+RRL+ GAELGGPRLWAW+T+ +FM LW++FVVLSSLKVSG I
Sbjct: 489 VGCIVVLVLRRLIIGAELGGPRLWAWLTSAYFMMLWVVFVVLSSLKVSGVI 539