Miyakogusa Predicted Gene

Lj5g3v1602330.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1602330.1 101330_g.1
         (493 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23160.1 | Symbols: CRK8 | cysteine-rich RLK (RECEPTOR-like p...   231   1e-60
ATMG00820.1 | Symbols: ORF170 | Reverse transcriptase (RNA-depen...    97   2e-20

>AT4G23160.1 | Symbols: CRK8 | cysteine-rich RLK (RECEPTOR-like
           protein kinase) 8 | chr4:12129485-12134086 FORWARD
           LENGTH=1262
          Length = 1262

 Score =  231 bits (588), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 111/243 (45%), Positives = 156/243 (64%), Gaps = 6/243 (2%)

Query: 253 WIEAMKEEYKSMQDNKVWELVPLPEGVKPIGCKWIFKTKRDSNGNVERYKARLVAKGYTQ 312
           W  AM +E  +M+    WE+  LP   KPIGCKW++K K +S+G +ERYKARLVAKGYTQ
Sbjct: 98  WCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQ 157

Query: 313 KEGIDFKETFSPVSSKDSFRTIMALVAHYDLKLHQMDVKTAFLNGNIDETIYMVQPENFV 372
           +EGIDF ETFSPV    S + I+A+ A Y+  LHQ+D+  AFLNG++DE IYM  P  + 
Sbjct: 158 QEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYA 217

Query: 373 S--GD--PKNMACKLTKSIYGLKQASRQWYHKFHEVILSFGFEVNVVEDCVYHKFSGSKY 428
           +  GD  P N  C L KSIYGLKQASRQW+ KF   ++ FGF  +  +   + K + + +
Sbjct: 218 ARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLF 277

Query: 429 IFPVLYVDDILLATNDIGMLHETKRFLSRKFEMKDLGDASFVLGIQIHRDRSRGILGLSQ 488
           +  ++YVDDI++ +N+   + E K  L   F+++DLG   + LG++I   RS   + + Q
Sbjct: 278 LCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKYFLGLEIA--RSAAGINICQ 335

Query: 489 RNY 491
           R Y
Sbjct: 336 RKY 338


>ATMG00820.1 | Symbols: ORF170 | Reverse transcriptase
           (RNA-dependent DNA polymerase) | chrM:228573-229085
           REVERSE LENGTH=170
          Length = 170

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 61/91 (67%)

Query: 253 WIEAMKEEYKSMQDNKVWELVPLPEGVKPIGCKWIFKTKRDSNGNVERYKARLVAKGYTQ 312
           W +AM+EE  ++  NK W LVP P     +GCKW+FKTK  S+G ++R KARLVAKG+ Q
Sbjct: 40  WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQ 99

Query: 313 KEGIDFKETFSPVSSKDSFRTIMALVAHYDL 343
           +EGI F ET+SPV    + RTI+ +    ++
Sbjct: 100 EEGIYFVETYSPVVRTATIRTILNVAQQLEV 130