Miyakogusa Predicted Gene

Lj5g3v1601860.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1601860.1 Non Chatacterized Hit- tr|K4AEY0|K4AEY0_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si037437,32.56,8e-17,DUF761,Protein of unknown function DUF761,
plant; seg,NULL,NODE_48153_length_704_cov_61.022728.path1.1
         (180 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G38700.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   120   4e-28
AT4G02170.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   106   1e-23

>AT5G38700.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: mitochondrion;
           EXPRESSED IN: 10 plant structures; EXPRESSED DURING:
           LP.04 four leaves visible, LP.10 ten leaves visible,
           petal differentiation and expansion stage, LP.08 eight
           leaves visible, LP.12 twelve leaves visible; BEST
           Arabidopsis thaliana protein match is: unknown protein
           (TAIR:AT4G02170.1); Has 64 Blast hits to 64 proteins in
           13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr5:15489690-15490238 FORWARD
           LENGTH=182
          Length = 182

 Score =  120 bits (301), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 73/168 (43%), Positives = 98/168 (58%), Gaps = 8/168 (4%)

Query: 10  QRAWNLLRLSLLWARKGGVFRRRLATELR-LVPKYLKRLGHTTPQNQINY---YFERELS 65
           QRAW+L+R++LLW RKGG+F+R    ELR L  K+LK L H    +   Y   Y E++LS
Sbjct: 14  QRAWSLVRMALLWGRKGGIFKRWHMFELRNLFSKHLKALNHHNSVDNNRYLTRYGEKQLS 73

Query: 66  FDKTPIFHVKMYRPSSMRFNLPHIPCINPHVXXXXXXXXXXXXIVEYDNGRKSIVLVNAE 125
           FD+TPIF+VKM+RP+SMRF L   PCI                  + D+ R       + 
Sbjct: 74  FDETPIFNVKMHRPTSMRFLL---PCI-ARPADFDYDFELDGTQDDTDDVRSYGYYDGSC 129

Query: 126 DHGQDIAFSXXXXXXXXXGIDKQADEFIARFYQQMKLQRQISLLQYTE 173
           +   D + +         G+D +A+EFIA+FY+QMKLQRQIS LQY E
Sbjct: 130 NEKCDRSANDDQEEEEEKGVDVRAEEFIAKFYEQMKLQRQISYLQYKE 177


>AT4G02170.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G38700.1); Has 53 Blast hits to 53 proteins in
           10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
           - 0; Plants - 53; Viruses - 0; Other Eukaryotes - 0
           (source: NCBI BLink). | chr4:958126-958641 FORWARD
           LENGTH=171
          Length = 171

 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/178 (40%), Positives = 105/178 (58%), Gaps = 29/178 (16%)

Query: 3   LKNRGVGQRAWNLLRLSLLWARKGGVFRRRLATELR-LVPKYLKRLGHTTPQNQINYYFE 61
           ++   +  +AW+L++++LLW RKGGVF++    ELR L  K+LK L H    N   YY E
Sbjct: 9   IRRNAITHKAWSLMKMALLWGRKGGVFKKWPLFELRSLFFKHLKALAHHH-SNGDRYYGE 67

Query: 62  RELSFDKTPIFHV--KMYRP-SSMRFNLPHIPCINPHVXXXXXXXXXXXXIVEYD---NG 115
           R+LSFD+TP+F+V  KM+ P SSMRF L  +PC  P V              +YD   +G
Sbjct: 68  RQLSFDETPLFNVKKKMHCPTSSMRFLL--LPCFAPPVD------------FDYDFEMDG 113

Query: 116 RKSIVLVNAEDHGQDIAFSXXXXXXXXXGIDKQADEFIARFYQQMKLQRQISLLQYTE 173
           +     V +  +G D + S         G+D +A+EFIA+FY+Q+KLQRQ+S L+Y +
Sbjct: 114 QDYSDEVQS--YGYDESCS-----EEEKGVDVRAEEFIAKFYEQIKLQRQVSYLKYKQ 164