Miyakogusa Predicted Gene

Lj5g3v1601830.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1601830.1 CUFF.55585.1
         (261 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G25920.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...   239   1e-63

>AT2G25920.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: 3'-5' exonuclease domain-containing protein / K
           homology domain-containing protein / KH
           domain-containing protein (TAIR:AT2G25910.2); Has 131
           Blast hits to 125 proteins in 54 species: Archae - 0;
           Bacteria - 50; Metazoa - 12; Fungi - 12; Plants - 41;
           Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
           | chr2:11054425-11055916 REVERSE LENGTH=280
          Length = 280

 Score =  239 bits (610), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 138/245 (56%), Positives = 161/245 (65%), Gaps = 24/245 (9%)

Query: 23  KRTRDPEEEVYLDNLRSHKRYLSEIMASSLNGLTVGDSLTDNLMESPARSESSFFLRDDM 82
           KRTRDPE+EVYLDNLRS KRYLSEIMA SLNGLTVGDSL  N++ESPARSES  + RDD+
Sbjct: 42  KRTRDPEDEVYLDNLRSQKRYLSEIMACSLNGLTVGDSLPVNMLESPARSESFLYHRDDL 101

Query: 83  SLQYSPMSEDSDDSRFCETPLQSCSP---QPDSIPSSPVSPYRHQRXXXXXXXXXXXXXX 139
           SLQYSPMSEDSD++RFCE P  + S    QP+S P+SPVSPYR+QR              
Sbjct: 102 SLQYSPMSEDSDEARFCEDPTATASTSSSQPESRPTSPVSPYRYQRPLTSTNSPQPSPTI 161

Query: 140 XIH-----------GCTVSTSQPRQRSSDSEGRFPSSPSDICHSADLRRAALLRSVQMRT 188
             H             T +T Q RQR SD+EGRFPSSPSDICHS DLRR ALLRSVQMRT
Sbjct: 162 LHHSHTCPASMISNAATTTTPQSRQRGSDTEGRFPSSPSDICHSGDLRRTALLRSVQMRT 221

Query: 189 HPHGYASLELPFGSGQDPTPNIDTEERSCSYMKSLVDEGEYQIEECVPEPVFNHDNKSCS 248
            P GY+S   P         NID EER CS  KS+ ++  Y   E +P    +  +KSC 
Sbjct: 222 QPCGYSSSSGPS--------NIDGEERMCS--KSMEEDRGYNKGEDIPYAEVSSKSKSCK 271

Query: 249 VLNVK 253
            L+++
Sbjct: 272 ALDMR 276