Miyakogusa Predicted Gene

Lj5g3v1600750.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1600750.1 Non Chatacterized Hit- tr|F1R7W9|F1R7W9_DANRE
Uncharacterized protein (Fragment) OS=Danio rerio
GN=s,31.61,4e-19,seg,NULL; DUF4149,Domain of unknown function DUF4149;
LATE EMBRYOGENESIS ABUNDANT (PLANTS) LEA-RELAT,CUFF.55584.1
         (208 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G62580.1 | Symbols:  | Late embryogenesis abundant protein (L...   310   4e-85
AT1G72100.1 | Symbols:  | late embryogenesis abundant domain-con...    55   3e-08
AT1G22600.1 | Symbols:  | Late embryogenesis abundant protein (L...    49   2e-06

>AT3G62580.1 | Symbols:  | Late embryogenesis abundant protein (LEA)
           family protein | chr3:23146931-23147735 FORWARD
           LENGTH=213
          Length = 213

 Score =  310 bits (794), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 152/213 (71%), Positives = 177/213 (83%), Gaps = 5/213 (2%)

Query: 1   MGWLSRFLTAVTFLAVGVLFSPETLAS-----KSTALSTYLKLAHLLSFSTAFGSALWVT 55
           MGW + FL  V  LAVGV+FSPET  S      S  +S +LKLAHLLSF+TA+G+ALW T
Sbjct: 1   MGWYTSFLVVVASLAVGVIFSPETFGSLTNGENSAKISIFLKLAHLLSFATAWGAALWAT 60

Query: 56  FIGGIIMFKNLPRHQFGNLQSKMFPAYFSLVGTCGAIAVASFGYLHPWKTASTSERYQLG 115
           FIGGIIMFKNLPRHQFGNLQSK+FPAYF+LVG+C AI++++FGYLHPWK++ST E+YQ+G
Sbjct: 61  FIGGIIMFKNLPRHQFGNLQSKLFPAYFTLVGSCCAISLSAFGYLHPWKSSSTVEKYQIG 120

Query: 116 FLLSSFAFNLTNLFVFTPMTIELMKQRHKXXXXXXXXXXXXWSKNVEVAKTNPKLAAMNK 175
           FLLS+FAFNLTNLFVFTPMTI++MKQRHK            WSKN E AK+ PKLAAMNK
Sbjct: 121 FLLSAFAFNLTNLFVFTPMTIDMMKQRHKVERENNIGDEVGWSKNREKAKSIPKLAAMNK 180

Query: 176 KFGMIHGLSSLSNIMSFGSLAVHSWYLAGKINL 208
           KFGMIHGLSSL+NI SFGSLA+HSWYLAGK+NL
Sbjct: 181 KFGMIHGLSSLANIFSFGSLAMHSWYLAGKLNL 213


>AT1G72100.1 | Symbols:  | late embryogenesis abundant
           domain-containing protein / LEA domain-containing
           protein | chr1:27127250-27128811 FORWARD LENGTH=480
          Length = 480

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 76/169 (44%), Gaps = 10/169 (5%)

Query: 41  LLSFSTAFGSALWVTFIGGIIMFKNLPRHQFGNLQSKMFPAYFSLVGTCGAIAVASFGYL 100
           L   + AFG+++WVTF+   ++   L R QFG +QSK++P YF    T   I V  FG++
Sbjct: 315 LTGIAAAFGTSVWVTFVSSYVLASVLGRQQFGVVQSKLYPVYFK--ATSVGILVGLFGHV 372

Query: 101 HPWKT---ASTSERYQLGFLLSSFAFNLTNLFVFTPMTIELMKQRHKXXXXXXXXXXXXW 157
              +       +E +Q   LLSSF     N     P   + M +R K             
Sbjct: 373 LSRRRKLLTDATEMWQGVNLLSSFFMIEANKSFVEPRATKAMFERMKAEKEEGRGGERTS 432

Query: 158 SKNVEVAKTNPKLAAMNKKFGMIHGLSSLSNIMSFGSLAVHSWYLAGKI 206
            + +       KL  ++++   ++  SS  NI++  SL  H  YL  ++
Sbjct: 433 EQEL-----RRKLEQLSERLSKLNTYSSWLNILTLMSLTWHFVYLGQRL 476


>AT1G22600.1 | Symbols:  | Late embryogenesis abundant protein (LEA)
           family protein | chr1:7987308-7989187 REVERSE LENGTH=385
          Length = 385

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 19/46 (41%), Positives = 29/46 (63%)

Query: 41  LLSFSTAFGSALWVTFIGGIIMFKNLPRHQFGNLQSKMFPAYFSLV 86
           ++  + A+G  +WVTF+ G ++   L   QFG +QSKM+P YF  V
Sbjct: 198 IVGIAAAYGMCVWVTFVSGYVLASVLGEQQFGVVQSKMYPVYFKAV 243