Miyakogusa Predicted Gene

Lj5g3v1600740.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1600740.1 tr|G7IDS4|G7IDS4_MEDTR BRCT domain-containing
protein OS=Medicago truncatula GN=MTR_1g087290 PE=4
SV,65.2,0,ZF_PHD_2,Zinc finger, PHD-finger; BRCT,BRCT domain;
seg,NULL; no description,NULL; no description,Zi,CUFF.55578.1
         (1226 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02110.1 | Symbols:  | transcription coactivators | chr4:9351...   398   e-110
AT1G67180.1 | Symbols:  | zinc finger (C3HC4-type RING finger) f...    74   8e-13
AT1G77320.1 | Symbols: MEI1 | transcription coactivators | chr1:...    59   2e-08
AT1G77320.2 | Symbols: MEI1 | transcription coactivators | chr1:...    57   6e-08
AT4G21070.1 | Symbols: ATBRCA1, BRCA1 | breast cancer susceptibi...    57   9e-08
AT1G04020.2 | Symbols: ATBARD1, BARD1 | breast cancer associated...    55   4e-07
AT1G04020.1 | Symbols: ATBARD1, BARD1, ROW1 | breast cancer asso...    55   4e-07

>AT4G02110.1 | Symbols:  | transcription coactivators |
            chr4:935191-940191 FORWARD LENGTH=1329
          Length = 1329

 Score =  398 bits (1022), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 184/304 (60%), Positives = 232/304 (76%), Gaps = 13/304 (4%)

Query: 842  TVLRNKSENSIEDEKENRPIDKEQDVMGG----RKVGNKSSVKPAKIN------SKKMGL 891
            TV+++  +NS + EKEN  +D E   +G       V  K   K AK        SK++ +
Sbjct: 1023 TVMKDVGDNSAK-EKENIAVDNESRKVGSGGDQSPVARKKVAKSAKTGTKAEKESKQLRV 1081

Query: 892  NPSISESKAR-AITEARCFILSGHRLQRKEFQQVIKRLKGRVCRDSHQWSYQATHFIAPD 950
            NP  S    +    E + FI+SG R QR E+QQ+I+RLKG+ CRDSHQWSYQATHFIAP+
Sbjct: 1082 NPLASRKVFQDQEHEPKFFIVSGPRSQRNEYQQIIRRLKGKCCRDSHQWSYQATHFIAPE 1141

Query: 951  PLRRTEKFFAAAASGRWILTTDFLTASSQAGKLLPEEPYEWHKTGLNEDGAINMEAPRKW 1010
             +RRTEKFFAAAASG WIL TD++  S +AGKLL EEPYEWH +GL+ DGAIN+E+P+KW
Sbjct: 1142 -IRRTEKFFAAAASGSWILKTDYVADSKEAGKLLQEEPYEWHSSGLSADGAINLESPKKW 1200

Query: 1011 RLLRERTGHGAFYGMRIVVYGDCITPPLDTLKRVVKAGDGTILATSPPYTRFLGTGIDYA 1070
            RL+RE+TGHGA YG+RIVVYGDC  P LDTLKR VKAGDGTILAT+PPYTRFL    D+A
Sbjct: 1201 RLVREKTGHGALYGLRIVVYGDCTIPCLDTLKRAVKAGDGTILATAPPYTRFLNQNTDFA 1260

Query: 1071 IISPGMPRVDIWVQEFLKHEIPCIVADYLVEYVCKPGFPLERHVLYGTNTWAERSYANLQ 1130
            +ISPGMPR D+W+QEF++HEIPC+++DYLVEYVCKPG+ L++HVLY TN+WAE+S+  +Q
Sbjct: 1261 LISPGMPRDDVWIQEFIRHEIPCVLSDYLVEYVCKPGYALDKHVLYNTNSWAEKSFNKMQ 1320

Query: 1131 SRAE 1134
             RA+
Sbjct: 1321 LRAD 1324



 Score =  293 bits (749), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 130/228 (57%), Positives = 167/228 (73%), Gaps = 4/228 (1%)

Query: 7   PSRVFRGVHFVLIGFDPVTESKIRFKLVNGGGVDVGQYSGRCTHVIVDNIAYDDPVCVAA 66
           P + + GV F L+GF+P+  + +R KLV+GGGVDVGQ++  CTH+IVD + YDDP+CVAA
Sbjct: 8   PPKTYSGVKFALVGFNPIHGNSLRSKLVSGGGVDVGQFTQSCTHLIVDKLLYDDPICVAA 67

Query: 67  RRDGKTLVTALWVEHSADVGMTVDSASVMYRPPKDLNGIPGANELIMCLTGYLRQDRDDI 126
           R  GK +VT  WV+HS D+GM  ++ S++YRP +DLNGIPG+  L++CLTGY   DR+DI
Sbjct: 68  RNSGKVVVTGSWVDHSFDIGMLDNANSILYRPLRDLNGIPGSKALVVCLTGYQGHDREDI 127

Query: 127 MTMVGLMGAQFSKPLVANKVTHLICYKFEGEKYELAKKMGTIKLVNHRWLEDCLKDWVLL 186
           M MV LMG QFSKPLVAN+VTHLICYKFEGEKYELAK++  IKLVNHRWLEDCLK+W LL
Sbjct: 128 MRMVELMGGQFSKPLVANRVTHLICYKFEGEKYELAKRIKRIKLVNHRWLEDCLKNWKLL 187

Query: 187 PEDKYNKSGFELEMVXXXXXXXXXXXXXXLEQSGGRDRNKSPLSSKLG 234
           PE  Y  SG+EL+++               E +  +  N SPL  ++G
Sbjct: 188 PEVDYEISGYELDIMEASARDSEDEA----EDASVKPANTSPLGLRVG 231


>AT1G67180.1 | Symbols:  | zinc finger (C3HC4-type RING finger)
           family protein / BRCT domain-containing protein |
           chr1:25130099-25132169 FORWARD LENGTH=453
          Length = 453

 Score = 73.6 bits (179), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 55/81 (67%), Gaps = 2/81 (2%)

Query: 111 LIMCLTGYLRQDRDDIMTMVGLMGAQFSKPLVANKVTHLICYKFEGEKYELAKKMGTIKL 170
           ++  ++GY   DR  ++ ++   GA +   + +  +THL+C+KFEG+KY+LAKK GT+ +
Sbjct: 4   VVATVSGYHGSDRFKLIKLISHSGASYVGAM-SRSITHLVCWKFEGKKYDLAKKFGTV-V 61

Query: 171 VNHRWLEDCLKDWVLLPEDKY 191
           VNHRW+E+C+K+   + E  Y
Sbjct: 62  VNHRWVEECVKEGRRVSETPY 82


>AT1G77320.1 | Symbols: MEI1 | transcription coactivators |
           chr1:29056740-29062710 FORWARD LENGTH=972
          Length = 972

 Score = 58.9 bits (141), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/183 (26%), Positives = 84/183 (45%), Gaps = 21/183 (11%)

Query: 13  GVHFVLIGFDPVTESKIRFKLVNGGGVDVGQYSGRCTHVIVDNIAYDDPVCVAARR---- 68
           G+  +  GF    + KI+  + + GGV + + S     VIV N+       +AA+     
Sbjct: 102 GLKVLASGFLVDEKVKIKELVTSMGGVLLSRASSDVNFVIVKNV-------LAAKYKWAL 154

Query: 69  DGKTLVTALWVEHSADVGMTVDSASVMYRPPKDLNGIPGANELIMCLTGYLRQDRDDIMT 128
           + K +VT  W+    +    V         P++   IP  + L +C+T     +R  +  
Sbjct: 155 NKKPIVTLNWLHRCWNEHRVV---------PQEPYKIPPFSGLTICVTRIPADERKGMEK 205

Query: 129 MVGLMGAQFSKPLVANKVTHLICYKFEGEKYELAKKMGTIKLVNHRWLEDCLKDWVLLPE 188
           ++   G  +S  L  +  THLI    EG+KY++A+K G I++V  +W +  +   V L E
Sbjct: 206 VISEYGGSYSAELTKS-CTHLIADAAEGDKYKVARKWGHIQIVTRKWFQQSIDKKVCLNE 264

Query: 189 DKY 191
           + Y
Sbjct: 265 ESY 267



 Score = 57.4 bits (137), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 74  VTALWVEHSADVG-MTVDSASVMYRPPKDLNGIPGANELIMCLTGYLRQDRDDIMTMVGL 132
           V++ WV +   VG +   S+ ++Y P      +PG   L +C + +  ++ + +  +  +
Sbjct: 629 VSSHWVRNCLKVGCLLAVSSHILYSPLPCQTPLPGFESLCICSSQHNEKNVELLRNLSVV 688

Query: 133 MGAQFSKPLVANKVTHLICYKFEGEKYELAKKMGTIKLVNHRWLEDCLKDWVLLPEDKYN 192
           +GA F + L   KVTHLIC   +G+KY  A K G I  V   WL +C++   ++  D ++
Sbjct: 689 LGADFVERL-TRKVTHLICNFAKGDKYVRASKWGIIS-VTPDWLYECVRQNQVVCTDNFH 746


>AT1G77320.2 | Symbols: MEI1 | transcription coactivators |
           chr1:29056740-29062710 FORWARD LENGTH=955
          Length = 955

 Score = 57.4 bits (137), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 63/120 (52%), Gaps = 3/120 (2%)

Query: 74  VTALWVEHSADVG-MTVDSASVMYRPPKDLNGIPGANELIMCLTGYLRQDRDDIMTMVGL 132
           V++ WV +   VG +   S+ ++Y P      +PG   L +C + +  ++ + +  +  +
Sbjct: 612 VSSHWVRNCLKVGCLLAVSSHILYSPLPCQTPLPGFESLCICSSQHNEKNVELLRNLSVV 671

Query: 133 MGAQFSKPLVANKVTHLICYKFEGEKYELAKKMGTIKLVNHRWLEDCLKDWVLLPEDKYN 192
           +GA F + L   KVTHLIC   +G+KY  A K G I  V   WL +C++   ++  D ++
Sbjct: 672 LGADFVERL-TRKVTHLICNFAKGDKYVRASKWGIIS-VTPDWLYECVRQNQVVCTDNFH 729


>AT4G21070.1 | Symbols: ATBRCA1, BRCA1 | breast cancer susceptibility1
            | chr4:11248174-11252633 FORWARD LENGTH=941
          Length = 941

 Score = 57.0 bits (136), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 53/126 (42%), Gaps = 9/126 (7%)

Query: 936  SHQWSYQATHFIAP----DPLRRTEKFFAAAASGRWILTTDFLTASSQAGKLLPEEPYEW 991
            S  W    TH IA        +RT KF  A   G+WILT D++ A  +  K + EEPYE 
Sbjct: 760  SKNWDSTVTHVIASINENGACKRTLKFMMAILEGKWILTIDWIKACMKNTKYVSEEPYE- 818

Query: 992  HKTGLNEDGAINMEAPRKWRLLRERTGHGAFYGMRIVVYGDCITPPLDTLKRVVKAGDGT 1051
                +  D     E P   R    +     F G++  + GD        L+ ++ A  GT
Sbjct: 819  ----ITMDVHGIREGPYLGRQRALKKKPKLFTGLKFYIMGDFELAYKGYLQDLIVAAGGT 874

Query: 1052 ILATSP 1057
            IL   P
Sbjct: 875  ILRRRP 880


>AT1G04020.2 | Symbols: ATBARD1, BARD1 | breast cancer associated RING
            1 | chr1:1036610-1040045 FORWARD LENGTH=713
          Length = 713

 Score = 54.7 bits (130), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 65/154 (42%), Gaps = 15/154 (9%)

Query: 909  FILSGHRLQR---KEFQQVIKRLKGRVCRDSHQWSYQATHFIAPD----PLRRTEKFFAA 961
             +L G  L +   K  + +  R    + R    W+   TH IA         RT K    
Sbjct: 490  LVLCGSALSKSDKKLMESLAVRFNATISR---YWNPSVTHVIASTDEKGACTRTLKVLMG 546

Query: 962  AASGRWILTTDFLTASSQAGKLLPEEPYEWHKTGLNEDGAINMEAPRKWRLLRERTGHGA 1021
              +G+WI+   ++ AS +A + + EEP+E     +  D     + P+  RL  E      
Sbjct: 547  ILNGKWIINAAWMKASLKASQPVDEEPFE-----IQIDTQGCQDGPKTARLRAETNKPKL 601

Query: 1022 FYGMRIVVYGDCITPPLDTLKRVVKAGDGTILAT 1055
            F G++   +GD      + L+ +VK   GTIL T
Sbjct: 602  FEGLKFYFFGDFYKGYKEDLQNLVKVAGGTILNT 635


>AT1G04020.1 | Symbols: ATBARD1, BARD1, ROW1 | breast cancer
            associated RING 1 | chr1:1036610-1040045 FORWARD
            LENGTH=714
          Length = 714

 Score = 54.7 bits (130), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 65/154 (42%), Gaps = 15/154 (9%)

Query: 909  FILSGHRLQR---KEFQQVIKRLKGRVCRDSHQWSYQATHFIAPD----PLRRTEKFFAA 961
             +L G  L +   K  + +  R    + R    W+   TH IA         RT K    
Sbjct: 491  LVLCGSALSKSDKKLMESLAVRFNATISR---YWNPSVTHVIASTDEKGACTRTLKVLMG 547

Query: 962  AASGRWILTTDFLTASSQAGKLLPEEPYEWHKTGLNEDGAINMEAPRKWRLLRERTGHGA 1021
              +G+WI+   ++ AS +A + + EEP+E     +  D     + P+  RL  E      
Sbjct: 548  ILNGKWIINAAWMKASLKASQPVDEEPFE-----IQIDTQGCQDGPKTARLRAETNKPKL 602

Query: 1022 FYGMRIVVYGDCITPPLDTLKRVVKAGDGTILAT 1055
            F G++   +GD      + L+ +VK   GTIL T
Sbjct: 603  FEGLKFYFFGDFYKGYKEDLQNLVKVAGGTILNT 636