Miyakogusa Predicted Gene

Lj5g3v1600670.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1600670.1 Non Chatacterized Hit- tr|C5WMI2|C5WMI2_SORBI
Putative uncharacterized protein Sb01g037590
OS=Sorghu,35.27,2e-17,coiled-coil,NULL; seg,NULL; DUF4228,Protein of
unknown function DUF4228,CUFF.55571.1
         (205 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G02090.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   101   4e-22

>AT4G02090.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN: N-terminal
           protein myristoylation; LOCATED IN: cellular_component
           unknown; EXPRESSED IN: root; Has 132 Blast hits to 132
           proteins in 12 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 132; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr4:923122-923730 FORWARD LENGTH=202
          Length = 202

 Score =  101 bits (251), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/216 (36%), Positives = 105/216 (48%), Gaps = 47/216 (21%)

Query: 1   MGNQISLRPSDATC----KIVFWDGSVRKFDQPVMVAELMLEHPQQVVVEFQEG------ 50
           MGN    R  DA      K+V  DG V+  ++   VAE+MLE+PQ VVVEF         
Sbjct: 1   MGNVAGSRKLDAAGMAAGKVVLSDGRVQNLEEETTVAEIMLENPQHVVVEFDPSSISFNN 60

Query: 51  ---VSQRRPTPLPADKKLDMNKVYLMVPMKR--GKPVG-----LSCEESRRILLMVNSAL 100
                +R+  PLPADK L+  K+YL++P KR  G+        L+ EE R++L    + +
Sbjct: 61  DAKTVKRKLAPLPADKTLEPGKIYLVLPAKRSGGRAAKSSSAVLTSEEMRKMLFSATAMV 120

Query: 101 HSKYLACSSGFMPRLPSLCQN-----TSIVEAGTGVGXXXXXXXXXXXXXXDQFAEILAE 155
            S + +   G +P   +         T  V A T VG                   + AE
Sbjct: 121 RSSF-SYYEGILPWFTTRSYKNNNPATDTVVAATSVG------------------RLEAE 161

Query: 156 MSE-GRPEYLSLSRQLSGKEWKPSLDTIKEKNIEKK 190
           M E  RPE+LS  RQLSG+ WKPSLD I+EK  +KK
Sbjct: 162 MEEEDRPEFLS--RQLSGRGWKPSLDPIREKKAKKK 195