Miyakogusa Predicted Gene
- Lj5g3v1599600.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1599600.1 CUFF.55563.1
(182 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G47430.1 | Symbols: CKI1 | Signal transduction histidine kina... 114 4e-26
AT2G17820.1 | Symbols: ATHK1, AHK1, HK1 | histidine kinase 1 | c... 87 8e-18
AT2G01830.2 | Symbols: WOL, CRE1, WOL1, AHK4, ATCRE1 | CHASE dom... 79 2e-15
AT2G01830.1 | Symbols: WOL, CRE1, WOL1, AHK4, ATCRE1 | CHASE dom... 78 3e-15
AT2G01830.3 | Symbols: WOL, CRE1, WOL1, AHK4, ATCRE1 | CHASE dom... 78 3e-15
AT1G27320.1 | Symbols: AHK3, HK3 | histidine kinase 3 | chr1:948... 72 2e-13
AT5G35750.1 | Symbols: AHK2, HK2 | histidine kinase 2 | chr5:139... 72 2e-13
AT5G10720.1 | Symbols: AHK5, CKI2, HK5 | histidine kinase 5 | ch... 63 1e-10
AT3G04580.2 | Symbols: EIN4 | Signal transduction histidine kina... 52 2e-07
AT3G04580.1 | Symbols: EIN4 | Signal transduction histidine kina... 52 2e-07
AT5G26594.1 | Symbols: ARR24, RR24 | response regulator 24 | chr... 48 3e-06
AT3G04280.3 | Symbols: ARR22, RR22 | response regulator 22 | chr... 48 4e-06
AT3G04280.2 | Symbols: ARR22, RR22 | response regulator 22 | chr... 48 4e-06
AT3G04280.1 | Symbols: ARR22, RR22 | response regulator 22 | chr... 48 4e-06
>AT2G47430.1 | Symbols: CKI1 | Signal transduction histidine kinase |
chr2:19459167-19463122 REVERSE LENGTH=1122
Length = 1122
Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/152 (40%), Positives = 97/152 (63%), Gaps = 10/152 (6%)
Query: 36 QECGDSSNSKPLSGRKILLVEDNLVLQNIALKTLRDLGATDIEKCVNGEEAVLLVDEGL- 94
QE S+ + L G+++L+V+DN + + +A L+ +G +++E+C +G+EA+ LV EGL
Sbjct: 972 QETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLT 1031
Query: 95 KREDADP----PYHYILMDCQMPVMDGFEATRKIREMEKSYGVHIPIIALTAL---SEKI 147
+RE+ P+ YI MDCQMP MDG+EATR+IR++EKSYGV PIIA++ SE+
Sbjct: 1032 QREEQGSVDKLPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEA 1091
Query: 148 TAEAGNGMDFHIVKPIKRENLLKAMRSVHTKK 179
GMD + K + + L +R + +K+
Sbjct: 1092 RETIQAGMDAFLDKSLNQ--LANVIREIESKR 1121
>AT2G17820.1 | Symbols: ATHK1, AHK1, HK1 | histidine kinase 1 |
chr2:7743133-7748013 REVERSE LENGTH=1207
Length = 1207
Score = 86.7 bits (213), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 59/163 (36%), Positives = 83/163 (50%), Gaps = 28/163 (17%)
Query: 40 DSSNSKPLSGRKILLVEDNLVLQNIALKTLRDLGATDIEKCVNGEEAVLLVD-------- 91
D N K L G +ILL ED VLQ +A L +GAT + +G++AV ++
Sbjct: 1034 DGKNQKSLEGIRILLAEDTPVLQRVATIMLEKMGAT-VTAVWDGQQAVDSLNYKSINAQA 1092
Query: 92 -----EGLKREDAD------------PPYHYILMDCQMPVMDGFEATRKIREMEKSYGVH 134
+ + E A+ PY ILMDCQMP MDG+EAT+ IR E +H
Sbjct: 1093 PTEEHKSFEEETANKVTTRETSLRNSSPYDLILMDCQMPKMDGYEATKAIRRAEIGTELH 1152
Query: 135 IPIIALT--ALSEKITAEAGNGMDFHIVKPIKRENLLKAMRSV 175
IPI+ALT A+S GMD ++ KPI R+ ++ + S+
Sbjct: 1153 IPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDRKLMVSTILSL 1195
>AT2G01830.2 | Symbols: WOL, CRE1, WOL1, AHK4, ATCRE1 | CHASE domain
containing histidine kinase protein | chr2:363332-368016
REVERSE LENGTH=1080
Length = 1080
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 75/134 (55%), Gaps = 16/134 (11%)
Query: 47 LSGRKILLVEDNLVLQNIALKTLRDLGATDIEKCVNGEEAVLLVDEGLKREDADPPYHYI 106
L+G+KIL+V+DN+V + +A L+ GA + C + L + + DA
Sbjct: 942 LTGKKILVVDDNIVNRRVAAGALKKFGAEVV--CAESGQVALGLLQIPHTFDA------C 993
Query: 107 LMDCQMPVMDGFEATRKIREMEK------SYGVHIPIIALTALSEKITAEA--GNGMDFH 158
MD QMP MDGFEATR+IR MEK + H+PI+A+TA T E +GMD +
Sbjct: 994 FMDIQMPQMDGFEATRQIRMMEKETKEKTNLEWHLPILAMTADVIHATYEECLKSGMDGY 1053
Query: 159 IVKPIKRENLLKAM 172
+ KP + ENL K++
Sbjct: 1054 VSKPFEEENLYKSV 1067
>AT2G01830.1 | Symbols: WOL, CRE1, WOL1, AHK4, ATCRE1 | CHASE domain
containing histidine kinase protein | chr2:363332-367429
REVERSE LENGTH=1057
Length = 1057
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 75/134 (55%), Gaps = 16/134 (11%)
Query: 47 LSGRKILLVEDNLVLQNIALKTLRDLGATDIEKCVNGEEAVLLVDEGLKREDADPPYHYI 106
L+G+KIL+V+DN+V + +A L+ GA + C + L + + DA
Sbjct: 919 LTGKKILVVDDNIVNRRVAAGALKKFGAEVV--CAESGQVALGLLQIPHTFDA------C 970
Query: 107 LMDCQMPVMDGFEATRKIREMEK------SYGVHIPIIALTALSEKITAEA--GNGMDFH 158
MD QMP MDGFEATR+IR MEK + H+PI+A+TA T E +GMD +
Sbjct: 971 FMDIQMPQMDGFEATRQIRMMEKETKEKTNLEWHLPILAMTADVIHATYEECLKSGMDGY 1030
Query: 159 IVKPIKRENLLKAM 172
+ KP + ENL K++
Sbjct: 1031 VSKPFEEENLYKSV 1044
>AT2G01830.3 | Symbols: WOL, CRE1, WOL1, AHK4, ATCRE1 | CHASE domain
containing histidine kinase protein | chr2:363332-367429
REVERSE LENGTH=1057
Length = 1057
Score = 78.2 bits (191), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/134 (38%), Positives = 75/134 (55%), Gaps = 16/134 (11%)
Query: 47 LSGRKILLVEDNLVLQNIALKTLRDLGATDIEKCVNGEEAVLLVDEGLKREDADPPYHYI 106
L+G+KIL+V+DN+V + +A L+ GA + C + L + + DA
Sbjct: 919 LTGKKILVVDDNIVNRRVAAGALKKFGAEVV--CAESGQVALGLLQIPHTFDA------C 970
Query: 107 LMDCQMPVMDGFEATRKIREMEK------SYGVHIPIIALTALSEKITAEA--GNGMDFH 158
MD QMP MDGFEATR+IR MEK + H+PI+A+TA T E +GMD +
Sbjct: 971 FMDIQMPQMDGFEATRQIRMMEKETKEKTNLEWHLPILAMTADVIHATYEECLKSGMDGY 1030
Query: 159 IVKPIKRENLLKAM 172
+ KP + ENL K++
Sbjct: 1031 VSKPFEEENLYKSV 1044
>AT1G27320.1 | Symbols: AHK3, HK3 | histidine kinase 3 |
chr1:9487780-9492027 FORWARD LENGTH=1036
Length = 1036
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/157 (33%), Positives = 77/157 (49%), Gaps = 32/157 (20%)
Query: 47 LSGRKILLVEDNLVLQNIALKTLRDLGATDIEKCVNGEEAVLLVDEGLKREDADPPYHY- 105
L GRKIL+V+DN V +A L+ GA D+ +G +A+ L+ PP+ +
Sbjct: 887 LLGRKILIVDDNNVNLRVAAGALKKYGA-DVVCAESGIKAISLLK---------PPHEFD 936
Query: 106 -ILMDCQMPVMDGFEATRKIREMEKSY------------------GVHIPIIALTALSEK 146
MD QMP MDGFEATR+IR+ME+ H+P++A+TA +
Sbjct: 937 ACFMDIQMPEMDGFEATRRIRDMEEEMNKRIKNGEALIVENGNKTSWHLPVLAMTADVIQ 996
Query: 147 ITAEA--GNGMDFHIVKPIKRENLLKAMRSVHTKKSD 181
T E GMD ++ KP + E L + + SD
Sbjct: 997 ATHEECLKCGMDGYVSKPFEAEQLYREVSRFFNSPSD 1033
>AT5G35750.1 | Symbols: AHK2, HK2 | histidine kinase 2 |
chr5:13911743-13916337 REVERSE LENGTH=1176
Length = 1176
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/148 (36%), Positives = 77/148 (52%), Gaps = 32/148 (21%)
Query: 47 LSGRKILLVEDNLVLQNIALKTLRDLGATDIEKCVNGEEAVLLVDEGLKREDADPPYHY- 105
L ++IL+V+DNLV + +A L+ GA I CV +A L + LK PP+++
Sbjct: 1032 LREKQILVVDDNLVNRRVAEGALKKYGA--IVTCVESGKAALAM---LK-----PPHNFD 1081
Query: 106 -ILMDCQMPVMDGFEATRKIREME------------------KSYGVHIPIIALTALSEK 146
MD QMP MDGFEATR++RE+E K H+PI+A+TA +
Sbjct: 1082 ACFMDLQMPEMDGFEATRRVRELEREINKKIASGEVSAEMFCKFSSWHVPILAMTADVIQ 1141
Query: 147 ITAE--AGNGMDFHIVKPIKRENLLKAM 172
T E GMD ++ KP + E L A+
Sbjct: 1142 ATHEECMKCGMDGYVSKPFEEEVLYTAV 1169
>AT5G10720.1 | Symbols: AHK5, CKI2, HK5 | histidine kinase 5 |
chr5:3386835-3390541 FORWARD LENGTH=922
Length = 922
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/171 (33%), Positives = 78/171 (45%), Gaps = 39/171 (22%)
Query: 29 SHVSGETQECGDSSNSKPLSGRKILLVEDNLVLQNIALKTLRDLGATDIEKCVNGEEAVL 88
SH E E SKP KILLVEDN + +A ++ LG T ++ NG EA+
Sbjct: 761 SHREEEKAETEVKETSKP----KILLVEDNKINIMVAKSMMKQLGHT-MDIANNGVEAIT 815
Query: 89 LVDEGLKREDADPPYHYILMDCQMPVMDGFEATRKIREMEKS--------YGVHI----- 135
++ Y +LMD MPV+DG +ATR IR E++ GV I
Sbjct: 816 AINSS--------SYDLVLMDVCMPVLDGLKATRLIRSYEETGNWNAAIEAGVDISTSEN 867
Query: 136 -----------PIIALTA--LSEKITAEAGNGMDFHIVKPIKRENLLKAMR 173
PIIA+TA L+E NGMD I KP+ + L + ++
Sbjct: 868 EQVCMRPTNRLPIIAMTANTLAESSEECYANGMDSFISKPVTLQKLRECLQ 918
>AT3G04580.2 | Symbols: EIN4 | Signal transduction histidine kinase,
hybrid-type, ethylene sensor | chr3:1235576-1237965
REVERSE LENGTH=766
Length = 766
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 73/147 (49%), Gaps = 15/147 (10%)
Query: 22 LKTTP--QKSHVSGETQECGDSSNSKPLSGRKILLVEDNLVLQNIALKTLRDLGATDIEK 79
+T P ++S ++G E +++ L G +I L +D+ V + + + L LG ++
Sbjct: 612 FQTRPSIRRSILAGNAPELQHPNSNSILRGLRITLADDDDVNRTVTKRLLEKLGC-EVTA 670
Query: 80 CVNGEEAVLLVDEGLKREDADPPYHYILMDCQMPVMDGFEATRKIREMEKSYGVHIP-II 138
+G E + + + + Y +++D QMP MDGFE KIR K G H P II
Sbjct: 671 VSSGFECLNALS------NVEMSYRVVILDLQMPEMDGFEVAMKIR---KFCGHHWPLII 721
Query: 139 ALTALSEKITAE--AGNGMDFHIVKPI 163
ALTA +E E GM+ I KP+
Sbjct: 722 ALTASTEDHVRERCLQMGMNGMIQKPV 748
>AT3G04580.1 | Symbols: EIN4 | Signal transduction histidine kinase,
hybrid-type, ethylene sensor | chr3:1235576-1237965
REVERSE LENGTH=766
Length = 766
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 73/147 (49%), Gaps = 15/147 (10%)
Query: 22 LKTTP--QKSHVSGETQECGDSSNSKPLSGRKILLVEDNLVLQNIALKTLRDLGATDIEK 79
+T P ++S ++G E +++ L G +I L +D+ V + + + L LG ++
Sbjct: 612 FQTRPSIRRSILAGNAPELQHPNSNSILRGLRITLADDDDVNRTVTKRLLEKLGC-EVTA 670
Query: 80 CVNGEEAVLLVDEGLKREDADPPYHYILMDCQMPVMDGFEATRKIREMEKSYGVHIP-II 138
+G E + + + + Y +++D QMP MDGFE KIR K G H P II
Sbjct: 671 VSSGFECLNALS------NVEMSYRVVILDLQMPEMDGFEVAMKIR---KFCGHHWPLII 721
Query: 139 ALTALSEKITAE--AGNGMDFHIVKPI 163
ALTA +E E GM+ I KP+
Sbjct: 722 ALTASTEDHVRERCLQMGMNGMIQKPV 748
>AT5G26594.1 | Symbols: ARR24, RR24 | response regulator 24 |
chr5:9269282-9270254 FORWARD LENGTH=139
Length = 139
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 8/75 (10%)
Query: 53 LLVEDNLVLQNIALKTLRDLGATDIEKCVNGEEAVLLVDEGLKREDADPPYHYILMDCQM 112
L+V+D+ V Q I K L LG + + NG+EAV + G Y ILMD M
Sbjct: 21 LVVDDSFVNQTIHQKLLNRLGIKN-DVVTNGKEAVDVYCSG-------GNYDLILMDMDM 72
Query: 113 PVMDGFEATRKIREM 127
P+M+G +AT+++REM
Sbjct: 73 PIMNGIQATKRLREM 87
>AT3G04280.3 | Symbols: ARR22, RR22 | response regulator 22 |
chr3:1130138-1130689 REVERSE LENGTH=142
Length = 142
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 18/142 (12%)
Query: 35 TQECGDSSNSKPLSGRK----ILLVED---NLVLQNIALKTLRDLGATDIEKCVNGEEAV 87
T+ G + +K + +K +L+V+D N L + +KT+ + T NGEEAV
Sbjct: 3 TKSTGGTEKTKSIEVKKKLINVLIVDDDPLNRRLHEMIIKTIGGISQT----AKNGEEAV 58
Query: 88 LLVDEGLKREDADPPYHYILMDCQMPVMDGFEATRKIREMEKSYGVHIPIIALTALSEKI 147
+L D + + ILMD +MP DG T+K+REM K + + + ++ E+
Sbjct: 59 IL------HRDGEASFDLILMDKEMPERDGVSTTKKLREM-KVTSMIVGVTSVADQEEER 111
Query: 148 TAEAGNGMDFHIVKPIKRENLL 169
A G++ + KP+ + +
Sbjct: 112 KAFMEAGLNHCLEKPLTKAKIF 133
>AT3G04280.2 | Symbols: ARR22, RR22 | response regulator 22 |
chr3:1130138-1130689 REVERSE LENGTH=142
Length = 142
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 18/142 (12%)
Query: 35 TQECGDSSNSKPLSGRK----ILLVED---NLVLQNIALKTLRDLGATDIEKCVNGEEAV 87
T+ G + +K + +K +L+V+D N L + +KT+ + T NGEEAV
Sbjct: 3 TKSTGGTEKTKSIEVKKKLINVLIVDDDPLNRRLHEMIIKTIGGISQT----AKNGEEAV 58
Query: 88 LLVDEGLKREDADPPYHYILMDCQMPVMDGFEATRKIREMEKSYGVHIPIIALTALSEKI 147
+L D + + ILMD +MP DG T+K+REM K + + + ++ E+
Sbjct: 59 IL------HRDGEASFDLILMDKEMPERDGVSTTKKLREM-KVTSMIVGVTSVADQEEER 111
Query: 148 TAEAGNGMDFHIVKPIKRENLL 169
A G++ + KP+ + +
Sbjct: 112 KAFMEAGLNHCLEKPLTKAKIF 133
>AT3G04280.1 | Symbols: ARR22, RR22 | response regulator 22 |
chr3:1130138-1130689 REVERSE LENGTH=142
Length = 142
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 18/142 (12%)
Query: 35 TQECGDSSNSKPLSGRK----ILLVED---NLVLQNIALKTLRDLGATDIEKCVNGEEAV 87
T+ G + +K + +K +L+V+D N L + +KT+ + T NGEEAV
Sbjct: 3 TKSTGGTEKTKSIEVKKKLINVLIVDDDPLNRRLHEMIIKTIGGISQT----AKNGEEAV 58
Query: 88 LLVDEGLKREDADPPYHYILMDCQMPVMDGFEATRKIREMEKSYGVHIPIIALTALSEKI 147
+L D + + ILMD +MP DG T+K+REM K + + + ++ E+
Sbjct: 59 IL------HRDGEASFDLILMDKEMPERDGVSTTKKLREM-KVTSMIVGVTSVADQEEER 111
Query: 148 TAEAGNGMDFHIVKPIKRENLL 169
A G++ + KP+ + +
Sbjct: 112 KAFMEAGLNHCLEKPLTKAKIF 133