Miyakogusa Predicted Gene

Lj5g3v1598560.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1598560.2 Non Chatacterized Hit- tr|I1L7Q1|I1L7Q1_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.49147 PE,87.93,0,no
description,WD40/YVTN repeat-like-containing domain; seg,NULL;
WD40,WD40 repeat; BROMODOMAIN-CONT,CUFF.55570.2
         (348 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G47410.1 | Symbols:  | WD40/YVTN repeat-like-containing domai...   448   e-126
AT2G47410.2 | Symbols:  | WD40/YVTN repeat-like-containing domai...   448   e-126
AT5G49430.1 | Symbols:  | WD40/YVTN repeat-like-containing domai...   433   e-122
AT5G50230.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...    54   2e-07
AT3G49660.1 | Symbols:  | Transducin/WD40 repeat-like superfamil...    50   3e-06

>AT2G47410.1 | Symbols:  | WD40/YVTN repeat-like-containing
           domain;Bromodomain | chr2:19449133-19456991 FORWARD
           LENGTH=1520
          Length = 1520

 Score =  448 bits (1152), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/350 (64%), Positives = 258/350 (73%), Gaps = 5/350 (1%)

Query: 1   MIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHTASSYVLDVHPFNPRIAMSAGYD 60
           MI+WSLDNRFVLAAIMDCRICVWNA DGSLVH LTGH+ SSYVLDVHPFNPRIAMSAGYD
Sbjct: 533 MIIWSLDNRFVLAAIMDCRICVWNAADGSLVHCLTGHSESSYVLDVHPFNPRIAMSAGYD 592

Query: 61  GRTIVWDIWEGIPIRTYEIGRFKLVDGKFSPDGTSIILSDDVGQIYFLNTGQGESQKDAK 120
           G+TI+WDIWEGIPI+ YEIGRFKLVDGKFS DGTSI+LSDDVGQIYFLNTGQGESQK+AK
Sbjct: 593 GKTIIWDIWEGIPIKVYEIGRFKLVDGKFSQDGTSIVLSDDVGQIYFLNTGQGESQKNAK 652

Query: 121 YDQVFLGDYRPLIQDTQGNVLDQETQLPPHRRNIQEPLCDSSMVPYPEPYQSQFQQRRLG 180
           YDQ FLGDYRPLI+DT G+VLDQETQL PHRRN+Q+ LCDSSM+PYPEP Q+ FQQRRLG
Sbjct: 653 YDQFFLGDYRPLIRDTNGHVLDQETQLLPHRRNLQDLLCDSSMIPYPEPDQTMFQQRRLG 712

Query: 181 ALGIEWRPSMIKYAVGPEFSVDQDYPLIPLIDLEGMFELQPELTDAMFWEPEYDIASDDN 240
           ALG+EWRPS IK++VGP+FS+ QDY + PL DL+ + E  PE  DAM+WEPE+++ SDD 
Sbjct: 713 ALGVEWRPSSIKFSVGPDFSLGQDYIMPPLADLDRLIEPLPEFIDAMYWEPEHEVLSDD- 771

Query: 241 NDSEYN--VNEDNSSAAEQGSVSAIXXXXXXXXXXXXXXXXXXXXXXXKKHKVEVEVMTS 298
           NDSEYN  V+ D + A+   + S                         +KH  +V V TS
Sbjct: 772 NDSEYNAEVSSDGARASPCSNSSNELECSSEDSDVENIHESSYHWKRRRKHP-KVNVSTS 830

Query: 299 SGRRIRKRNLDECNGNTSGSNRTIXXXXXXXXXXXXXXXXXXXXPQRVAA 348
           SGRR  KR LDE + + SG  RT                     PQR AA
Sbjct: 831 SGRR-DKRILDENDSSNSGIKRTKNRRIVVKASKRKHSDVKASRPQRAAA 879


>AT2G47410.2 | Symbols:  | WD40/YVTN repeat-like-containing
           domain;Bromodomain | chr2:19449133-19456991 FORWARD
           LENGTH=1519
          Length = 1519

 Score =  448 bits (1152), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/350 (64%), Positives = 258/350 (73%), Gaps = 5/350 (1%)

Query: 1   MIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHTASSYVLDVHPFNPRIAMSAGYD 60
           MI+WSLDNRFVLAAIMDCRICVWNA DGSLVH LTGH+ SSYVLDVHPFNPRIAMSAGYD
Sbjct: 532 MIIWSLDNRFVLAAIMDCRICVWNAADGSLVHCLTGHSESSYVLDVHPFNPRIAMSAGYD 591

Query: 61  GRTIVWDIWEGIPIRTYEIGRFKLVDGKFSPDGTSIILSDDVGQIYFLNTGQGESQKDAK 120
           G+TI+WDIWEGIPI+ YEIGRFKLVDGKFS DGTSI+LSDDVGQIYFLNTGQGESQK+AK
Sbjct: 592 GKTIIWDIWEGIPIKVYEIGRFKLVDGKFSQDGTSIVLSDDVGQIYFLNTGQGESQKNAK 651

Query: 121 YDQVFLGDYRPLIQDTQGNVLDQETQLPPHRRNIQEPLCDSSMVPYPEPYQSQFQQRRLG 180
           YDQ FLGDYRPLI+DT G+VLDQETQL PHRRN+Q+ LCDSSM+PYPEP Q+ FQQRRLG
Sbjct: 652 YDQFFLGDYRPLIRDTNGHVLDQETQLLPHRRNLQDLLCDSSMIPYPEPDQTMFQQRRLG 711

Query: 181 ALGIEWRPSMIKYAVGPEFSVDQDYPLIPLIDLEGMFELQPELTDAMFWEPEYDIASDDN 240
           ALG+EWRPS IK++VGP+FS+ QDY + PL DL+ + E  PE  DAM+WEPE+++ SDD 
Sbjct: 712 ALGVEWRPSSIKFSVGPDFSLGQDYIMPPLADLDRLIEPLPEFIDAMYWEPEHEVLSDD- 770

Query: 241 NDSEYN--VNEDNSSAAEQGSVSAIXXXXXXXXXXXXXXXXXXXXXXXKKHKVEVEVMTS 298
           NDSEYN  V+ D + A+   + S                         +KH  +V V TS
Sbjct: 771 NDSEYNAEVSSDGARASPCSNSSNELECSSEDSDVENIHESSYHWKRRRKHP-KVNVSTS 829

Query: 299 SGRRIRKRNLDECNGNTSGSNRTIXXXXXXXXXXXXXXXXXXXXPQRVAA 348
           SGRR  KR LDE + + SG  RT                     PQR AA
Sbjct: 830 SGRR-DKRILDENDSSNSGIKRTKNRRIVVKASKRKHSDVKASRPQRAAA 878


>AT5G49430.1 | Symbols:  | WD40/YVTN repeat-like-containing
           domain;Bromodomain | chr5:20037338-20045454 REVERSE
           LENGTH=1677
          Length = 1677

 Score =  433 bits (1113), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/325 (66%), Positives = 250/325 (76%), Gaps = 6/325 (1%)

Query: 1   MIVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHTASSYVLDVHPFNPRIAMSAGYD 60
           MI WSLDNRFVLAAIMDCRICVWNA DGSLVHSLTGHTAS+YV+DVHPFNPRIAMSAGYD
Sbjct: 549 MIAWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTASTYVMDVHPFNPRIAMSAGYD 608

Query: 61  GRTIVWDIWEGIPIRTYEIGRFKLVDGKFSPDGTSIILSDDVGQIYFLNTGQGESQKDAK 120
           G+TIVWDIWEGIPI+ Y+I  +KLVDGKFSPDGTSIILSDDVGQ+Y L+TGQG+SQKDAK
Sbjct: 609 GKTIVWDIWEGIPIQIYDISHYKLVDGKFSPDGTSIILSDDVGQLYILSTGQGDSQKDAK 668

Query: 121 YDQVFLGDYRPLIQDTQGNVLDQETQLPPHRRNIQEPLCDSSMVPYPEPYQSQFQQRRLG 180
           YDQ FLGDYRPLIQDT GNVLDQE+QL P+RRN+++PLCDS M+PY EPYQ+ FQ+RRLG
Sbjct: 669 YDQFFLGDYRPLIQDTYGNVLDQESQLQPYRRNMEDPLCDSGMIPYEEPYQTTFQKRRLG 728

Query: 181 ALGIEWRPSMIKYAVGPEFSVDQDYPLIPLIDLEGMFELQPELTDAMFWEPEYDIASDDN 240
           ALG EWRPS +K AVGP+ ++D+DY + PL DL+ + E  PE  D M WEPE DI SD+ 
Sbjct: 729 ALGKEWRPSSLKLAVGPDITLDRDYQMPPLADLD-LAEPLPEFIDVMEWEPEVDILSDE- 786

Query: 241 NDSEYNVNEDNSSAAEQGSVSAIXXXXXXXXXXXXX----XXXXXXXXXXKKHKVEVEVM 296
           NDSEYNV E+ SS  EQ  +++                            KKHK E  +M
Sbjct: 787 NDSEYNVPEEYSSGKEQECLNSSTSGESGSSSGESYEDDDHQNSLRRSKRKKHKKEAGIM 846

Query: 297 TSSGRRIRKRNLDECNGNTSGSNRT 321
           TSSGRR++KRN DE  G  S   RT
Sbjct: 847 TSSGRRVKKRNFDELEGAPSNKKRT 871


>AT5G50230.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr5:20448632-20450855 REVERSE LENGTH=509
          Length = 509

 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 38/70 (54%)

Query: 7   DNRFVLAAIMDCRICVWNAVDGSLVHSLTGHTASSYVLDVHPFNPRIAMSAGYDGRTIVW 66
           DN+ V+AA     + VW+   G + H+LTGHT     +DV  F+ R  +SA YD    +W
Sbjct: 278 DNKSVIAATSSNNLFVWDVSSGRVRHTLTGHTDKVCAVDVSKFSSRHVVSAAYDRTIKLW 337

Query: 67  DIWEGIPIRT 76
           D+ +G    T
Sbjct: 338 DLHKGYCTNT 347


>AT3G49660.1 | Symbols:  | Transducin/WD40 repeat-like superfamily
           protein | chr3:18413690-18415223 FORWARD LENGTH=317
          Length = 317

 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 5/118 (4%)

Query: 2   IVWSLDNRFVLAAIMDCRICVWNAVDGSLVHSLTGHTASSYVLDVHPFNPRIAM--SAGY 59
           + +S D RF+++A  D  + +W+   GSL+ +L GHT  ++ ++   FNP+  M  S  +
Sbjct: 77  VAFSSDARFIVSASDDKTLKLWDVETGSLIKTLIGHTNYAFCVN---FNPQSNMIVSGSF 133

Query: 60  DGRTIVWDIWEGIPIRTYEIGRFKLVDGKFSPDGTSIILSDDVGQIYFLNTGQGESQK 117
           D    +WD+  G  ++        +    F+ DG+ I+ S   G     ++G G   K
Sbjct: 134 DETVRIWDVTTGKCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIWDSGTGHCVK 191