Miyakogusa Predicted Gene

Lj5g3v1598380.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1598380.1 tr|I1JBF6|I1JBF6_SOYBN ATP-dependent Clp protease
proteolytic subunit OS=Glycine max GN=Gma.6743
PE=,97.11,0,CLP_protease,ClpP/TepA; CLP_PROTEASE_SER,ClpP, active
site; CLP_PROTEASE_HIS,ClpP, active site; ATP-,CUFF.55553.1
         (173 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G02560.1 | Symbols: CLPP5, NCLPP5, NCLPP1 | nuclear encoded C...   334   2e-92
AT1G66670.1 | Symbols: CLPP3, NCLPP3 | CLP protease proteolytic ...   193   5e-50
AT5G45390.1 | Symbols: CLPP4, NCLPP4 | CLP protease P4 | chr5:18...   183   6e-47
AT5G23140.1 | Symbols: CLPP2, NCLPP7 | nuclear-encoded CLP prote...   166   7e-42
AT1G11750.2 | Symbols: CLPP6 | CLP protease proteolytic subunit ...   151   2e-37
AT1G11750.1 | Symbols: CLPP6, NCLPP1, NCLPP6 | CLP protease prot...   151   2e-37
ATCG00670.1 | Symbols: CLPP1, PCLPP | plastid-encoded CLP P | ch...   136   7e-33
AT1G12410.1 | Symbols: CLPR2, NCLPP2, CLP2 | CLP protease proteo...   134   4e-32
AT4G17040.1 | Symbols: CLPR4 | CLP protease R subunit 4 | chr4:9...   125   1e-29
AT1G09130.3 | Symbols:  | ATP-dependent caseinolytic (Clp) prote...   119   1e-27
AT1G09130.2 | Symbols:  | ATP-dependent caseinolytic (Clp) prote...   119   1e-27
AT1G09130.1 | Symbols:  | ATP-dependent caseinolytic (Clp) prote...   119   1e-27
AT1G49970.1 | Symbols: CLPR1, NCLPP5, SVR2 | CLP protease proteo...    93   1e-19

>AT1G02560.1 | Symbols: CLPP5, NCLPP5, NCLPP1 | nuclear encoded CLP
           protease 5 | chr1:538000-539805 FORWARD LENGTH=298
          Length = 298

 Score =  334 bits (856), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 161/164 (98%), Positives = 162/164 (98%)

Query: 1   MANIIVAQLLYLDAVDPNKDIVMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASM 60
           MANIIVAQLLYLDAVDP KDIVMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASM
Sbjct: 135 MANIIVAQLLYLDAVDPTKDIVMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASM 194

Query: 61  GAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLSYHTG 120
           GAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYL+YHTG
Sbjct: 195 GAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLAYHTG 254

Query: 121 QSLEKINQDTDRDFFMSAKEAKEYGLIDGVIMNPLKALQPLPAA 164
           QSLEKINQDTDRDFFMSAKEAKEYGLIDGVIMNPLKALQPL AA
Sbjct: 255 QSLEKINQDTDRDFFMSAKEAKEYGLIDGVIMNPLKALQPLAAA 298


>AT1G66670.1 | Symbols: CLPP3, NCLPP3 | CLP protease proteolytic
           subunit 3 | chr1:24863995-24865646 REVERSE LENGTH=309
          Length = 309

 Score =  193 bits (491), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 87/150 (58%), Positives = 116/150 (77%)

Query: 2   ANIIVAQLLYLDAVDPNKDIVMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMG 61
           A+++++QLL LDA D  +DI +++NSPGGS+TAGM I+D M+  + DVSTVC+GLAASMG
Sbjct: 107 ADLVISQLLLLDAEDSERDITLFINSPGGSITAGMGIYDAMKQCKADVSTVCLGLAASMG 166

Query: 62  AFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLSYHTGQ 121
           AFLL++G+KGKRY +PNS++MIHQPLG A G  T++ I+  EM++HK  LN   S  TG+
Sbjct: 167 AFLLASGSKGKRYCMPNSKVMIHQPLGTAGGKATEMSIRIREMMYHKIKLNKIFSRITGK 226

Query: 122 SLEKINQDTDRDFFMSAKEAKEYGLIDGVI 151
              +I  DTDRD F++  EAKEYGLID VI
Sbjct: 227 PESEIESDTDRDNFLNPWEAKEYGLIDAVI 256


>AT5G45390.1 | Symbols: CLPP4, NCLPP4 | CLP protease P4 |
           chr5:18396351-18397586 FORWARD LENGTH=292
          Length = 292

 Score =  183 bits (464), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 86/163 (52%), Positives = 125/163 (76%), Gaps = 1/163 (0%)

Query: 1   MANIIVAQLLYLDAVDPNKDIVMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASM 60
           +A+ I++QLL LDA DP KDI +++NSPGGS++A MAI+D ++ +R DVST+ +G+AAS 
Sbjct: 100 VADAIMSQLLLLDAKDPKKDIKLFINSPGGSLSATMAIYDVVQLVRADVSTIALGIAAST 159

Query: 61  GAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLSYHTG 120
            + +L AGTKGKR+++PN+RIMIHQPLGGA G   D++IQA E++H+K N+   ++  T 
Sbjct: 160 ASIILGAGTKGKRFAMPNTRIMIHQPLGGASGQAIDVEIQAKEVMHNKNNVTSIIAGCTS 219

Query: 121 QSLEKINQDTDRDFFMSAKEAKEYGLIDGVIM-NPLKALQPLP 162
           +S E++ +D DRD +MS  EA EYGLIDGVI  + +  L+P+P
Sbjct: 220 RSFEQVLKDIDRDRYMSPIEAVEYGLIDGVIDGDSIIPLEPVP 262


>AT5G23140.1 | Symbols: CLPP2, NCLPP7 | nuclear-encoded CLP protease
           P7 | chr5:7783811-7784826 FORWARD LENGTH=241
          Length = 241

 Score =  166 bits (420), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 83/171 (48%), Positives = 119/171 (69%), Gaps = 2/171 (1%)

Query: 2   ANIIVAQLLYLDAVDPNKDIVMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASMG 61
           ++++VAQLLYL++ +P+K I MY+NSPGG VTAG+AI+DTM++IR  +ST+C+G AASM 
Sbjct: 70  SHVVVAQLLYLESENPSKPIHMYLNSPGGHVTAGLAIYDTMQYIRSPISTICLGQAASMA 129

Query: 62  AFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLSYHTGQ 121
           + LL+AG KG+R SLPN+ +MIHQP GG  G   DI I   +++     LN     HTGQ
Sbjct: 130 SLLLAAGAKGQRRSLPNATVMIHQPSGGYSGQAKDITIHTKQIVRVWDALNELYVKHTGQ 189

Query: 122 SLEKINQDTDRDFFMSAKEAKEYGLIDGVI-MNPLKALQPLPAAEEGKDRA 171
            L+ +  + DRD FM+ +EAK +G+ID VI   PL+ ++      E KD++
Sbjct: 190 PLDVVANNMDRDHFMTPEEAKAFGIIDEVIDERPLELVKD-AVGNESKDKS 239


>AT1G11750.2 | Symbols: CLPP6 | CLP protease proteolytic subunit 6 |
           chr1:3967609-3969535 FORWARD LENGTH=289
          Length = 289

 Score =  151 bits (382), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 71/151 (47%), Positives = 102/151 (67%)

Query: 1   MANIIVAQLLYLDAVDPNKDIVMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASM 60
           +A  +++QL+ L ++D   DI+MY+N PGGS  + +AI+D M  I+P V TV  G+AAS 
Sbjct: 135 VAQRVISQLVTLASIDDKSDILMYLNCPGGSTYSVLAIYDCMSWIKPKVGTVAFGVAASQ 194

Query: 61  GAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLSYHTG 120
           GA LL+ G KG RY++PN+R+MIHQP  G  G   D+  Q NE +  +  ++   +  TG
Sbjct: 195 GALLLAGGEKGMRYAMPNTRVMIHQPQTGCGGHVEDVRRQVNEAIEARQKIDRMYAAFTG 254

Query: 121 QSLEKINQDTDRDFFMSAKEAKEYGLIDGVI 151
           Q LEK+ Q T+RD F+SA EA E+GLIDG++
Sbjct: 255 QPLEKVQQYTERDRFLSASEALEFGLIDGLL 285


>AT1G11750.1 | Symbols: CLPP6, NCLPP1, NCLPP6 | CLP protease
           proteolytic subunit 6 | chr1:3967609-3969535 FORWARD
           LENGTH=271
          Length = 271

 Score =  151 bits (382), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 71/151 (47%), Positives = 102/151 (67%)

Query: 1   MANIIVAQLLYLDAVDPNKDIVMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASM 60
           +A  +++QL+ L ++D   DI+MY+N PGGS  + +AI+D M  I+P V TV  G+AAS 
Sbjct: 117 VAQRVISQLVTLASIDDKSDILMYLNCPGGSTYSVLAIYDCMSWIKPKVGTVAFGVAASQ 176

Query: 61  GAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLSYHTG 120
           GA LL+ G KG RY++PN+R+MIHQP  G  G   D+  Q NE +  +  ++   +  TG
Sbjct: 177 GALLLAGGEKGMRYAMPNTRVMIHQPQTGCGGHVEDVRRQVNEAIEARQKIDRMYAAFTG 236

Query: 121 QSLEKINQDTDRDFFMSAKEAKEYGLIDGVI 151
           Q LEK+ Q T+RD F+SA EA E+GLIDG++
Sbjct: 237 QPLEKVQQYTERDRFLSASEALEFGLIDGLL 267


>ATCG00670.1 | Symbols: CLPP1, PCLPP | plastid-encoded CLP P |
           chrC:69910-71882 REVERSE LENGTH=196
          Length = 196

 Score =  136 bits (343), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 61/151 (40%), Positives = 100/151 (66%), Gaps = 1/151 (0%)

Query: 1   MANIIVAQLLYLDAVDPNKDIVMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASM 60
           ++N +++ ++YL      KD+ +++NSPGG V +GMAI+DTM+ +RPDV T+C+GLAAS+
Sbjct: 43  ISNQLISLMIYLSIEKDTKDLYLFINSPGGWVISGMAIYDTMQFVRPDVQTICMGLAASI 102

Query: 61  GAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQT-DIDIQANEMLHHKANLNGYLSYHT 119
            +F+L  G   KR + P++R+MIHQP       QT +  ++A E+L  +  +       T
Sbjct: 103 ASFILVGGAITKRIAFPHARVMIHQPASSFYEAQTGEFILEAEELLKLRETITRVYVQRT 162

Query: 120 GQSLEKINQDTDRDFFMSAKEAKEYGLIDGV 150
           G+ +  I++D +RD FMSA EA+ +G++D V
Sbjct: 163 GKPIWVISEDMERDVFMSATEAQAHGIVDLV 193


>AT1G12410.1 | Symbols: CLPR2, NCLPP2, CLP2 | CLP protease
           proteolytic subunit 2 | chr1:4223099-4224954 FORWARD
           LENGTH=279
          Length = 279

 Score =  134 bits (336), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 66/154 (42%), Positives = 99/154 (64%)

Query: 1   MANIIVAQLLYLDAVDPNKDIVMYVNSPGGSVTAGMAIFDTMRHIRPDVSTVCVGLAASM 60
            +N I+A +LYLD +D ++ I MY+N PGG +T  +AI+DTM+ ++  V T CVGLA ++
Sbjct: 110 FSNQILATMLYLDTLDDSRRIYMYLNGPGGDLTPSLAIYDTMKSLKSPVGTHCVGLAYNL 169

Query: 61  GAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLNGYLSYHTG 120
             FLL+AG KG R+++P SRI +  P G A+G   DI  +A E+   +  L   L+ +TG
Sbjct: 170 AGFLLAAGEKGHRFAMPLSRIALQSPAGAARGQADDIQNEAKELSRIRDYLFNELAKNTG 229

Query: 121 QSLEKINQDTDRDFFMSAKEAKEYGLIDGVIMNP 154
           Q  E++ +D  R    +A+EA EYGLID ++  P
Sbjct: 230 QPAERVFKDLSRVKRFNAEEAIEYGLIDKIVRPP 263


>AT4G17040.1 | Symbols: CLPR4 | CLP protease R subunit 4 |
           chr4:9586740-9589297 REVERSE LENGTH=305
          Length = 305

 Score =  125 bits (314), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/161 (40%), Positives = 91/161 (56%), Gaps = 8/161 (4%)

Query: 1   MANIIVAQLLYLDAVDPNKDIVMYVNSPG--------GSVTAGMAIFDTMRHIRPDVSTV 52
           +  +I+A+ LYL   D  K I +Y+NS G        G  T   AI+D M +++P + T+
Sbjct: 126 VTELILAEFLYLQYEDEEKPIYLYINSTGTTKNGEKLGYDTEAFAIYDVMGYVKPPIFTL 185

Query: 53  CVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQGGQTDIDIQANEMLHHKANLN 112
           CVG A    A LL+AG KG R +LP+S IMI QP+   QG  TD++I   E+ H K  + 
Sbjct: 186 CVGNAWGEAALLLTAGAKGNRSALPSSTIMIKQPIARFQGQATDVEIARKEIKHIKTEMV 245

Query: 113 GYLSYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVIMN 153
              S H G+S E+I  D  R  + S  EA EYG+ID V+ N
Sbjct: 246 KLYSKHIGKSPEQIEADMKRPKYFSPTEAVEYGIIDKVVYN 286


>AT1G09130.3 | Symbols:  | ATP-dependent caseinolytic (Clp)
           protease/crotonase family protein | chr1:2939731-2942217
           REVERSE LENGTH=370
          Length = 370

 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 99/163 (60%), Gaps = 11/163 (6%)

Query: 1   MANIIVAQLLYLDAVDPNKDIVMYVNSPG---------GSVTAGMAIFDTMRHIRPDVST 51
           +  ++VA+L+YL  +DP + I +Y+NS G         G  + G AI+D++  ++ +V T
Sbjct: 142 VTELVVAELMYLQWLDPKEPIYIYINSTGTTRDDGETVGMESEGFAIYDSLMQLKNEVHT 201

Query: 52  VCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQG--GQTDIDIQANEMLHHKA 109
           VCVG A      LLSAGTKGKR+ +P+++ MI QP   + G    +D+ I+A E++ ++ 
Sbjct: 202 VCVGAAIGQACLLLSAGTKGKRFMMPHAKAMIQQPRVPSSGLMPASDVLIRAKEVITNRD 261

Query: 110 NLNGYLSYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVIM 152
            L   LS HTG S+E +     R ++M A +AKE+G+ID ++ 
Sbjct: 262 ILVELLSKHTGNSVETVANVMRRPYYMDAPKAKEFGVIDRILW 304


>AT1G09130.2 | Symbols:  | ATP-dependent caseinolytic (Clp)
           protease/crotonase family protein | chr1:2940063-2942217
           REVERSE LENGTH=330
          Length = 330

 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 99/163 (60%), Gaps = 11/163 (6%)

Query: 1   MANIIVAQLLYLDAVDPNKDIVMYVNSPG---------GSVTAGMAIFDTMRHIRPDVST 51
           +  ++VA+L+YL  +DP + I +Y+NS G         G  + G AI+D++  ++ +V T
Sbjct: 142 VTELVVAELMYLQWLDPKEPIYIYINSTGTTRDDGETVGMESEGFAIYDSLMQLKNEVHT 201

Query: 52  VCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQG--GQTDIDIQANEMLHHKA 109
           VCVG A      LLSAGTKGKR+ +P+++ MI QP   + G    +D+ I+A E++ ++ 
Sbjct: 202 VCVGAAIGQACLLLSAGTKGKRFMMPHAKAMIQQPRVPSSGLMPASDVLIRAKEVITNRD 261

Query: 110 NLNGYLSYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVIM 152
            L   LS HTG S+E +     R ++M A +AKE+G+ID ++ 
Sbjct: 262 ILVELLSKHTGNSVETVANVMRRPYYMDAPKAKEFGVIDRILW 304


>AT1G09130.1 | Symbols:  | ATP-dependent caseinolytic (Clp)
           protease/crotonase family protein | chr1:2940063-2942217
           REVERSE LENGTH=330
          Length = 330

 Score =  119 bits (298), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 61/163 (37%), Positives = 99/163 (60%), Gaps = 11/163 (6%)

Query: 1   MANIIVAQLLYLDAVDPNKDIVMYVNSPG---------GSVTAGMAIFDTMRHIRPDVST 51
           +  ++VA+L+YL  +DP + I +Y+NS G         G  + G AI+D++  ++ +V T
Sbjct: 142 VTELVVAELMYLQWLDPKEPIYIYINSTGTTRDDGETVGMESEGFAIYDSLMQLKNEVHT 201

Query: 52  VCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQPLGGAQG--GQTDIDIQANEMLHHKA 109
           VCVG A      LLSAGTKGKR+ +P+++ MI QP   + G    +D+ I+A E++ ++ 
Sbjct: 202 VCVGAAIGQACLLLSAGTKGKRFMMPHAKAMIQQPRVPSSGLMPASDVLIRAKEVITNRD 261

Query: 110 NLNGYLSYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGVIM 152
            L   LS HTG S+E +     R ++M A +AKE+G+ID ++ 
Sbjct: 262 ILVELLSKHTGNSVETVANVMRRPYYMDAPKAKEFGVIDRILW 304


>AT1G49970.1 | Symbols: CLPR1, NCLPP5, SVR2 | CLP protease
           proteolytic subunit 1 | chr1:18501936-18504462 REVERSE
           LENGTH=387
          Length = 387

 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 87/160 (54%), Gaps = 10/160 (6%)

Query: 1   MANIIVAQLLYLDAVDPNKDIVMYVNSPG---------GSVTAGMAIFDTMRHIRPDVST 51
           +  ++VAQ ++LD  +P K I +Y+NSPG         GS T   AI DT+ + + DV T
Sbjct: 192 VTELLVAQFMWLDYDNPTKPIYLYINSPGTQNEKMETVGSETEAYAIADTISYCKSDVYT 251

Query: 52  VCVGLAASMGAFLLSAGTKGKRYSLPNSRIMIHQP-LGGAQGGQTDIDIQANEMLHHKAN 110
           +  G+A    A LLS G KG R   P+S   ++ P +  + G   D+ I+A E+  +   
Sbjct: 252 INCGMAFGQAAMLLSLGKKGYRAVQPHSSTKLYLPKVNRSSGAAIDMWIKAKELDANTEY 311

Query: 111 LNGYLSYHTGQSLEKINQDTDRDFFMSAKEAKEYGLIDGV 150
               L+  TG+S E+IN+D  R  ++ A+ A +YG+ D +
Sbjct: 312 YIELLAKGTGKSKEQINEDIKRPKYLQAQAAIDYGIADKI 351