Miyakogusa Predicted Gene

Lj5g3v1537640.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1537640.1 tr|C3KGZ0|C3KGZ0_ANOFI C9orf78 OS=Anoplopoma
fimbria GN=CI078 PE=2 SV=1,31.17,7e-19,SUBFAMILY NOT NAMED,NULL;
FAMILY NOT NAMED,Hepatocellular carcinoma-associated antigen 59;
Hep_59,He,CUFF.55514.1
         (288 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G02330.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Hepatocell...   340   5e-94

>AT1G02330.1 | Symbols:  | CONTAINS InterPro DOMAIN/s:
           Hepatocellular carcinoma-associated antigen 59
           (InterPro:IPR010756); Has 1239 Blast hits to 998
           proteins in 204 species: Archae - 4; Bacteria - 71;
           Metazoa - 421; Fungi - 109; Plants - 87; Viruses - 5;
           Other Eukaryotes - 542 (source: NCBI BLink). |
           chr1:462202-463521 REVERSE LENGTH=279
          Length = 279

 Score =  340 bits (873), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 192/288 (66%), Positives = 221/288 (76%), Gaps = 20/288 (6%)

Query: 9   KKNYRKRSAPVEQDQLPQSQDNNNE----SDDERERRMALEEIKLLQKQRERKSGIAANP 64
           K+N+RKRS         + +DN+      S++E +RR+ALEE+K LQK RERK GI   P
Sbjct: 4   KRNFRKRSFEE------EEEDNDVNKAAISEEEEKRRLALEEVKFLQKLRERKLGI---P 54

Query: 65  SLQSQAVVTAGSAAKPAEKNXXXXXXXXXLVLQDTFAQETAVMDEDPNMVKYVEQELAKK 124
           +L S A  + G   KP EK          LVLQDTFAQETAV+ EDPNMVKY+EQELAKK
Sbjct: 55  ALSSTAQSSIGKV-KPVEKTETEGEKEE-LVLQDTFAQETAVLIEDPNMVKYIEQELAKK 112

Query: 125 RGRKIDEADQIENELKRAEDELYKIPEHLKVKKRNSEESSTQWTTGIAEIQLPIEYKLKN 184
           RGR ID+A+++ENELKR EDELYKIP+HLKVKKR+SEESSTQWTTGIAE+QLPIEYKLKN
Sbjct: 113 RGRNIDDAEEVENELKRVEDELYKIPDHLKVKKRSSEESSTQWTTGIAEVQLPIEYKLKN 172

Query: 185 IEETEAAKKLLQEKRLMGRTKPEVSSIPSSYSADYFQRGRDYAEKLRREHPELYKDR-SL 243
           IEETEAAKKLLQE+RLMGR K E  SIPSSYSADYFQRG+DYAEKLRREHPELYKDR   
Sbjct: 173 IEETEAAKKLLQERRLMGRPKSEF-SIPSSYSADYFQRGKDYAEKLRREHPELYKDRGGP 231

Query: 244 QDDSSGSKQNDSST---DAAGAVQRQAATDEFMLERFRKRERHRVMRR 288
           Q D   +K + SS+   +A     RQAATD+ MLERFRKRER+RVMRR
Sbjct: 232 QADGEAAKPSTSSSTNNNADSGKSRQAATDQIMLERFRKRERNRVMRR 279