Miyakogusa Predicted Gene

Lj5g3v1533400.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1533400.3 tr|I3SAA1|I3SAA1_LOTJA Flap endonuclease 1
OS=Lotus japonicus GN=FEN1 PE=2 SV=1,99.66,0,XPGRADSUPER,DNA repair
protein (XPGC)/yeast Rad; no description,NULL; coiled-coil,NULL;
XPG_2,XPG co,CUFF.55447.3
         (290 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G26680.2 | Symbols:  | 5'-3' exonuclease family protein | chr...   457   e-129
AT5G26680.1 | Symbols:  | 5'-3' exonuclease family protein | chr...   448   e-126
AT3G28030.1 | Symbols: UVH3, UVR1 | 5'-3' exonuclease family pro...    79   3e-15
AT1G29630.2 | Symbols:  | 5'-3' exonuclease family protein | chr...    67   1e-11
AT1G01880.1 | Symbols:  | 5'-3' exonuclease family protein | chr...    67   2e-11
AT1G18090.2 | Symbols:  | 5'-3' exonuclease family protein | chr...    64   8e-11
AT1G18090.1 | Symbols:  | 5'-3' exonuclease family protein | chr...    64   8e-11
AT1G01880.2 | Symbols:  | 5'-3' exonuclease family protein | chr...    64   1e-10
AT3G48900.1 | Symbols:  | single-stranded DNA endonuclease famil...    54   8e-08
AT3G48900.2 | Symbols:  | single-stranded DNA endonuclease famil...    54   9e-08
AT1G29630.3 | Symbols:  | 5'-3' exonuclease family protein | chr...    52   6e-07

>AT5G26680.2 | Symbols:  | 5'-3' exonuclease family protein |
           chr5:9311882-9315458 REVERSE LENGTH=383
          Length = 383

 Score =  457 bits (1177), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 214/275 (77%), Positives = 242/275 (88%)

Query: 1   MKKQELAKRLSKRAEATEDLSEALKADNKEDIEKFSKRTVKVTKQHNEDCKKLLRLMGVP 60
           +K+QELAKR SKRA+AT DL+ A++A NKEDIEK+SKRTVKVTKQHN+DCK+LLRLMGVP
Sbjct: 93  LKRQELAKRYSKRADATADLTGAIEAGNKEDIEKYSKRTVKVTKQHNDDCKRLLRLMGVP 152

Query: 61  VVEAPSEAEAQCAALCKAGMVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEFEVAK 120
           VVEA SEAEAQCAALCK+G VY VASEDMDSLTFGAPKFLRHLMDPSS+K+PVMEFEVAK
Sbjct: 153 VVEATSEAEAQCAALCKSGKVYGVASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAK 212

Query: 121 ILEELNLTMDQFIDLCILSGCDYCDNIRGIGGQTALKLIRQHGSIENILENINKERYQIP 180
           ILEEL LTMDQFIDLCILSGCDYCD+IRGIGGQTALKLIRQHGSIE ILEN+NKERYQIP
Sbjct: 213 ILEELQLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENLNKERYQIP 272

Query: 181 EDWPYQEARRLFKEPMVTTGDDELNLKWSAPDEEGLITFLVNENGFNSDRVTXXXXXXXX 240
           E+WPY EAR+LFKEP V T +++L++KW++PDEEG++ FLVNENGFN DRVT        
Sbjct: 273 EEWPYNEARKLFKEPDVITDEEQLDIKWTSPDEEGIVQFLVNENGFNIDRVTKAIEKIKT 332

Query: 241 XXXXSSQGRLESFFKPAPSSSVPIKRKETPDNNAK 275
               SSQGRLESFFKP  +SSVP KRKE P++  K
Sbjct: 333 AKNKSSQGRLESFFKPVANSSVPAKRKEIPESTTK 367


>AT5G26680.1 | Symbols:  | 5'-3' exonuclease family protein |
           chr5:9311882-9315458 REVERSE LENGTH=453
          Length = 453

 Score =  448 bits (1152), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 211/267 (79%), Positives = 237/267 (88%)

Query: 1   MKKQELAKRLSKRAEATEDLSEALKADNKEDIEKFSKRTVKVTKQHNEDCKKLLRLMGVP 60
           +K+QELAKR SKRA+AT DL+ A++A NKEDIEK+SKRTVKVTKQHN+DCK+LLRLMGVP
Sbjct: 93  LKRQELAKRYSKRADATADLTGAIEAGNKEDIEKYSKRTVKVTKQHNDDCKRLLRLMGVP 152

Query: 61  VVEAPSEAEAQCAALCKAGMVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEFEVAK 120
           VVEA SEAEAQCAALCK+G VY VASEDMDSLTFGAPKFLRHLMDPSS+K+PVMEFEVAK
Sbjct: 153 VVEATSEAEAQCAALCKSGKVYGVASEDMDSLTFGAPKFLRHLMDPSSRKIPVMEFEVAK 212

Query: 121 ILEELNLTMDQFIDLCILSGCDYCDNIRGIGGQTALKLIRQHGSIENILENINKERYQIP 180
           ILEEL LTMDQFIDLCILSGCDYCD+IRGIGGQTALKLIRQHGSIE ILEN+NKERYQIP
Sbjct: 213 ILEELQLTMDQFIDLCILSGCDYCDSIRGIGGQTALKLIRQHGSIETILENLNKERYQIP 272

Query: 181 EDWPYQEARRLFKEPMVTTGDDELNLKWSAPDEEGLITFLVNENGFNSDRVTXXXXXXXX 240
           E+WPY EAR+LFKEP V T +++L++KW++PDEEG++ FLVNENGFN DRVT        
Sbjct: 273 EEWPYNEARKLFKEPDVITDEEQLDIKWTSPDEEGIVQFLVNENGFNIDRVTKAIEKIKT 332

Query: 241 XXXXSSQGRLESFFKPAPSSSVPIKRK 267
               SSQGRLESFFKP  +SSVP KRK
Sbjct: 333 AKNKSSQGRLESFFKPVANSSVPAKRK 359


>AT3G28030.1 | Symbols: UVH3, UVR1 | 5'-3' exonuclease family protein
            | chr3:10424321-10431178 FORWARD LENGTH=1479
          Length = 1479

 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/126 (30%), Positives = 72/126 (57%), Gaps = 3/126 (2%)

Query: 34   KFSKRTVKVTKQHNEDCKKLLRLMGVPVVEAPSEAEAQCAALCKAGMVYAVASEDMDSLT 93
            K  +    V+ +   +C++LL++ G+P + AP EAEAQCA + ++ +V  + ++D D   
Sbjct: 913  KLERNAESVSSEMFAECQELLQIFGIPYIIAPMEAEAQCAFMEQSNLVDGIVTDDSDVFL 972

Query: 94   FGAPKFLRHLMDPSSKKVPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDNIRGIGGQ 153
            FGA    +++ D    +  V  + +  I +EL L+ D+ I + +L G DY + I GIG  
Sbjct: 973  FGARSVYKNIFD---DRKYVETYFMKDIEKELGLSRDKIIRMAMLLGSDYTEGISGIGIV 1029

Query: 154  TALKLI 159
             A++++
Sbjct: 1030 NAIEVV 1035


>AT1G29630.2 | Symbols:  | 5'-3' exonuclease family protein |
           chr1:10349587-10353538 FORWARD LENGTH=735
          Length = 735

 Score = 67.4 bits (163), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 105/207 (50%), Gaps = 22/207 (10%)

Query: 1   MKKQELAKRLSKRAEATEDLSEALK----ADNKEDIEKFSKRTVKVTKQHNEDCKKLLRL 56
           MK ++  KR   R    E+L+ AL+     ++    E +SK  V ++     +  ++LR 
Sbjct: 84  MKLEQENKRARSR---KENLARALEHEANGNSSAAYECYSK-AVDISPSIAHELIQVLRQ 139

Query: 57  MGVPVVEAPSEAEAQCAALCKAGMVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEF 116
             V  V AP EA+AQ A L     V A+ +ED D + FG  + +   MD     V   EF
Sbjct: 140 ENVDYVVAPYEADAQMAFLAITKQVDAIITEDSDLIPFGCLRII-FKMDKFGHGV---EF 195

Query: 117 EVAKILEELNLTMDQF-----IDLCILSGCDYCDNIRGIGGQTALKLIRQHGSIENILEN 171
           + +K+ +  +L++  F     +++CILSGCDY  ++ G+G + A  LI +  S + ++++
Sbjct: 196 QASKLPKNKDLSLSGFSSQMLLEMCILSGCDYLQSLPGMGLKRAHALITKFKSYDRVIKH 255

Query: 172 INKERYQIPEDWPYQEARRLFKEPMVT 198
           +      +P    Y+E+   FK  ++T
Sbjct: 256 LKYSTVSVPP--LYEES---FKRALLT 277


>AT1G01880.1 | Symbols:  | 5'-3' exonuclease family protein |
           chr1:306558-308991 REVERSE LENGTH=599
          Length = 599

 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 73/133 (54%), Gaps = 4/133 (3%)

Query: 41  KVTKQHNEDCKKLLRLMGVPVVEAPSEAEAQCAALCKAGMVYAVASEDMDSLTFGAPKFL 100
           K+  +   +C +LL L+G+PV++A  EAEA CA L   G V A  + D D+  FGA   +
Sbjct: 114 KLFSEWVRECVELLELLGIPVLKANGEAEALCAQLNSQGFVDACITPDSDAFLFGAMCVI 173

Query: 101 RHLMDPSSKKVPVMEFEVAKILEELNLTMDQFIDLCILSGCDY-CDNIRGIGGQTALKLI 159
           + +  P+S++ P   + ++ I   L L     I + +L G DY    + GIG   AL+++
Sbjct: 174 KDI-KPNSRE-PFECYHMSHIESGLGLKRKHLIAISLLVGNDYDSGGVLGIGVDKALRIV 231

Query: 160 RQHGSIENILENI 172
           R+  S + +LE +
Sbjct: 232 REF-SEDQVLERL 243


>AT1G18090.2 | Symbols:  | 5'-3' exonuclease family protein |
           chr1:6224539-6227715 FORWARD LENGTH=577
          Length = 577

 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 100/214 (46%), Gaps = 13/214 (6%)

Query: 24  LKADNKEDIEKFSKRTVKVTKQHNEDCKKLLRLMGVPVVEAPSEAEAQCAALC----KAG 79
           LK  N     +  +R V VT        ++L+   V  + AP EA+AQ A L     + G
Sbjct: 110 LKEGNVAAATELFQRAVSVTSSMAHQLIQVLKSENVEFIVAPYEADAQLAYLSSLELEQG 169

Query: 80  MVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEFEVAKILEE----LNLTMDQFIDL 135
            + AV +ED D L +G  K +   MD   K   ++   V + +++     N   + F  +
Sbjct: 170 GIAAVITEDSDLLAYGC-KAVIFKMDRYGKGEELVLDNVFQAVDQKPSFQNFDQELFTAM 228

Query: 136 CILSGCDYCDNIRGIGGQTALKLIRQHGSIENILENINKERYQ-IPEDW--PYQEARRLF 192
           C+L+GCD+  ++ G+G   A   I ++ S+E +L  +  ++ + +P+D+   + EA  +F
Sbjct: 229 CVLAGCDFLPSVPGVGISRAHAFISKYQSVELVLSFLKTKKGKLVPDDYSSSFTEAVSVF 288

Query: 193 KEPMVTTGDDELNLKWSAPDEEGLITFLVNENGF 226
           +   V   D +  LK   P    L+   V +  F
Sbjct: 289 QHARVYDFDAK-KLKHLKPLSHNLLNLPVEQLEF 321


>AT1G18090.1 | Symbols:  | 5'-3' exonuclease family protein |
           chr1:6224539-6227715 FORWARD LENGTH=577
          Length = 577

 Score = 64.3 bits (155), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 57/214 (26%), Positives = 100/214 (46%), Gaps = 13/214 (6%)

Query: 24  LKADNKEDIEKFSKRTVKVTKQHNEDCKKLLRLMGVPVVEAPSEAEAQCAALC----KAG 79
           LK  N     +  +R V VT        ++L+   V  + AP EA+AQ A L     + G
Sbjct: 110 LKEGNVAAATELFQRAVSVTSSMAHQLIQVLKSENVEFIVAPYEADAQLAYLSSLELEQG 169

Query: 80  MVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEFEVAKILEE----LNLTMDQFIDL 135
            + AV +ED D L +G  K +   MD   K   ++   V + +++     N   + F  +
Sbjct: 170 GIAAVITEDSDLLAYGC-KAVIFKMDRYGKGEELVLDNVFQAVDQKPSFQNFDQELFTAM 228

Query: 136 CILSGCDYCDNIRGIGGQTALKLIRQHGSIENILENINKERYQ-IPEDW--PYQEARRLF 192
           C+L+GCD+  ++ G+G   A   I ++ S+E +L  +  ++ + +P+D+   + EA  +F
Sbjct: 229 CVLAGCDFLPSVPGVGISRAHAFISKYQSVELVLSFLKTKKGKLVPDDYSSSFTEAVSVF 288

Query: 193 KEPMVTTGDDELNLKWSAPDEEGLITFLVNENGF 226
           +   V   D +  LK   P    L+   V +  F
Sbjct: 289 QHARVYDFDAK-KLKHLKPLSHNLLNLPVEQLEF 321


>AT1G01880.2 | Symbols:  | 5'-3' exonuclease family protein |
           chr1:306558-308991 REVERSE LENGTH=598
          Length = 598

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 67/121 (55%), Gaps = 4/121 (3%)

Query: 53  LLRLMGVPVVEAPSEAEAQCAALCKAGMVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVP 112
           LL L+G+PV++A  EAEA CA L   G V A  + D D+  FGA   ++ +  P+S++ P
Sbjct: 125 LLELLGIPVLKANGEAEALCAQLNSQGFVDACITPDSDAFLFGAMCVIKDI-KPNSRE-P 182

Query: 113 VMEFEVAKILEELNLTMDQFIDLCILSGCDY-CDNIRGIGGQTALKLIRQHGSIENILEN 171
              + ++ I   L L     I + +L G DY    + GIG   AL+++R+  S + +LE 
Sbjct: 183 FECYHMSHIESGLGLKRKHLIAISLLVGNDYDSGGVLGIGVDKALRIVREF-SEDQVLER 241

Query: 172 I 172
           +
Sbjct: 242 L 242


>AT3G48900.1 | Symbols:  | single-stranded DNA endonuclease family
           protein | chr3:18132449-18136239 FORWARD LENGTH=536
          Length = 536

 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 57/125 (45%), Gaps = 3/125 (2%)

Query: 57  MGVPVVEAPSEAEAQCAALCKAGMVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEF 116
           +G+  ++   EAEAQCA L    +  A  S D D   FGA    R +       V    +
Sbjct: 68  LGILCLDGIEEAEAQCALLNSESLCDACFSFDSDIFLFGAKTVYREICLGEGGYVVC--Y 125

Query: 117 EVAKILEELNLTMDQFIDLCILSGCDYCDNIRGIGGQTALKLIRQHGSIENILENINKER 176
           E+  I ++L L  +  I L +L G DY   +RG+  + A +L+R  G    ILE +  E 
Sbjct: 126 EMDDIKKKLGLGRNSLIALALLLGSDYSQGVRGLRQEKACELVRSIGD-NVILEKVASEG 184

Query: 177 YQIPE 181
               E
Sbjct: 185 LSFAE 189


>AT3G48900.2 | Symbols:  | single-stranded DNA endonuclease family
           protein | chr3:18131854-18136239 FORWARD LENGTH=600
          Length = 600

 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 58/125 (46%), Gaps = 3/125 (2%)

Query: 57  MGVPVVEAPSEAEAQCAALCKAGMVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEF 116
           +G+  ++   EAEAQCA L    +  A  S D D   FGA    R +       V  + +
Sbjct: 132 LGILCLDGIEEAEAQCALLNSESLCDACFSFDSDIFLFGAKTVYREICLGEGGYV--VCY 189

Query: 117 EVAKILEELNLTMDQFIDLCILSGCDYCDNIRGIGGQTALKLIRQHGSIENILENINKER 176
           E+  I ++L L  +  I L +L G DY   +RG+  + A +L+R  G    ILE +  E 
Sbjct: 190 EMDDIKKKLGLGRNSLIALALLLGSDYSQGVRGLRQEKACELVRSIGD-NVILEKVASEG 248

Query: 177 YQIPE 181
               E
Sbjct: 249 LSFAE 253


>AT1G29630.3 | Symbols:  | 5'-3' exonuclease family protein |
           chr1:10350636-10353538 FORWARD LENGTH=581
          Length = 581

 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 37/131 (28%), Positives = 68/131 (51%), Gaps = 14/131 (10%)

Query: 73  AALCKAGMVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEFEVAKILEELNLTMDQF 132
           A L     V A+ +ED D + FG  + +   MD     V   EF+ +K+ +  +L++  F
Sbjct: 2   AFLAITKQVDAIITEDSDLIPFGCLRII-FKMDKFGHGV---EFQASKLPKNKDLSLSGF 57

Query: 133 -----IDLCILSGCDYCDNIRGIGGQTALKLIRQHGSIENILENINKERYQIPEDWPYQE 187
                +++CILSGCDY  ++ G+G + A  LI +  S + +++++      +P    Y+E
Sbjct: 58  SSQMLLEMCILSGCDYLQSLPGMGLKRAHALITKFKSYDRVIKHLKYSTVSVPP--LYEE 115

Query: 188 ARRLFKEPMVT 198
           +   FK  ++T
Sbjct: 116 S---FKRALLT 123