Miyakogusa Predicted Gene

Lj5g3v1533380.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1533380.1 tr|Q9W087|Q9W087_DROME CG2021 OS=Drosophila
melanogaster GN=CG2021 PE=2 SV=1,63.89,2e-19,no description,NULL;
LSM1,NULL; LSM,Ribonucleoprotein LSM domain; snRNP Sm
proteins,Ribonucleoprotei,CUFF.55445.1
         (79 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G65700.2 | Symbols:  | Small nuclear ribonucleoprotein family...   129   3e-31
AT1G65700.1 | Symbols:  | Small nuclear ribonucleoprotein family...   129   3e-31
AT1G65700.3 | Symbols:  | Small nuclear ribonucleoprotein family...   109   3e-25
AT1G19120.1 | Symbols:  | Small nuclear ribonucleoprotein family...    65   6e-12
AT3G14080.2 | Symbols:  | Small nuclear ribonucleoprotein family...    65   7e-12
AT3G14080.1 | Symbols:  | Small nuclear ribonucleoprotein family...    65   7e-12
AT2G03870.1 | Symbols:  | Small nuclear ribonucleoprotein family...    45   7e-06
AT2G03870.2 | Symbols:  | Small nuclear ribonucleoprotein family...    45   7e-06

>AT1G65700.2 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr1:24434463-24435870 REVERSE LENGTH=98
          Length = 98

 Score =  129 bits (325), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 66/79 (83%), Positives = 70/79 (88%)

Query: 1  MSTGPGLESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALG 60
          M+   GLE+LVDQ ISVITNDGRNIVG LKGFDQATNIILDESHERVFSTKEGVQ   LG
Sbjct: 1  MAATTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLG 60

Query: 61 LYIIRGDNISVVGELDEDL 79
          LYIIRGDNI V+GELDE+L
Sbjct: 61 LYIIRGDNIGVIGELDEEL 79


>AT1G65700.1 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr1:24434463-24435870 REVERSE LENGTH=98
          Length = 98

 Score =  129 bits (325), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 66/79 (83%), Positives = 70/79 (88%)

Query: 1  MSTGPGLESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALG 60
          M+   GLE+LVDQ ISVITNDGRNIVG LKGFDQATNIILDESHERVFSTKEGVQ   LG
Sbjct: 1  MAATTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKEGVQQHVLG 60

Query: 61 LYIIRGDNISVVGELDEDL 79
          LYIIRGDNI V+GELDE+L
Sbjct: 61 LYIIRGDNIGVIGELDEEL 79


>AT1G65700.3 | Symbols:  | Small nuclear ribonucleoprotein family
           protein | chr1:24434463-24435870 REVERSE LENGTH=141
          Length = 141

 Score =  109 bits (273), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 66/122 (54%), Positives = 70/122 (57%), Gaps = 43/122 (35%)

Query: 1   MSTGPGLESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTK--------- 51
           M+   GLE+LVDQ ISVITNDGRNIVG LKGFDQATNIILDESHERVFSTK         
Sbjct: 1   MAATTGLETLVDQIISVITNDGRNIVGVLKGFDQATNIILDESHERVFSTKCHLFNRILR 60

Query: 52  ----------------------------------EGVQLIALGLYIIRGDNISVVGELDE 77
                                             EGVQ   LGLYIIRGDNI V+GELDE
Sbjct: 61  KLTQIFKIGLVLQFFVCMSGHVDTSLDKCSWIFLEGVQQHVLGLYIIRGDNIGVIGELDE 120

Query: 78  DL 79
           +L
Sbjct: 121 EL 122


>AT1G19120.1 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr1:6608288-6609162 FORWARD LENGTH=128
          Length = 128

 Score = 65.5 bits (158), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 48/71 (67%), Gaps = 1/71 (1%)

Query: 6  GLESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIR 65
           L + +D+++ V+  DGR ++G L+ FDQ  N +L+E++ERV         I LGLYIIR
Sbjct: 14 SLAAYLDKKLLVLLRDGRKLMGLLRSFDQFANAVLEEAYERVIVGDLYCD-IPLGLYIIR 72

Query: 66 GDNISVVGELD 76
          G+N+ ++GELD
Sbjct: 73 GENVVLIGELD 83


>AT3G14080.2 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr3:4667717-4668989 FORWARD LENGTH=128
          Length = 128

 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 49/70 (70%), Gaps = 1/70 (1%)

Query: 7  LESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIRG 66
          L S +D+++ V+  DGR ++GTL+ FDQ  N +L+ + ERV   ++    I LGLY+IRG
Sbjct: 15 LASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCD-IPLGLYVIRG 73

Query: 67 DNISVVGELD 76
          +N+ ++GELD
Sbjct: 74 ENVVLIGELD 83


>AT3G14080.1 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr3:4667717-4668989 FORWARD LENGTH=128
          Length = 128

 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 31/70 (44%), Positives = 49/70 (70%), Gaps = 1/70 (1%)

Query: 7  LESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVFSTKEGVQLIALGLYIIRG 66
          L S +D+++ V+  DGR ++GTL+ FDQ  N +L+ + ERV   ++    I LGLY+IRG
Sbjct: 15 LASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCD-IPLGLYVIRG 73

Query: 67 DNISVVGELD 76
          +N+ ++GELD
Sbjct: 74 ENVVLIGELD 83


>AT2G03870.1 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr2:1180306-1181256 FORWARD LENGTH=99
          Length = 99

 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 7  LESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVF----STKEGVQLIALGLY 62
          L   VD+ + V    GR + GTLKG+DQ  N++LDE+ E V       K   Q   LGL 
Sbjct: 11 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGLI 70

Query: 63 IIRGDNISVVGELD 76
          + RG  + +V   D
Sbjct: 71 VCRGTAVMLVSPTD 84


>AT2G03870.2 | Symbols:  | Small nuclear ribonucleoprotein family
          protein | chr2:1180306-1181256 FORWARD LENGTH=99
          Length = 99

 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 4/74 (5%)

Query: 7  LESLVDQQISVITNDGRNIVGTLKGFDQATNIILDESHERVF----STKEGVQLIALGLY 62
          L   VD+ + V    GR + GTLKG+DQ  N++LDE+ E V       K   Q   LGL 
Sbjct: 11 LAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGLI 70

Query: 63 IIRGDNISVVGELD 76
          + RG  + +V   D
Sbjct: 71 VCRGTAVMLVSPTD 84