Miyakogusa Predicted Gene
- Lj5g3v1533330.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1533330.1 tr|G7IAC4|G7IAC4_MEDTR Transcription factor PIF3
OS=Medicago truncatula GN=MTR_1g084980 PE=4
SV=1,71.66,0,HLH,Helix-loop-helix domain; HLH, helix-loop-helix
DNA-binding domain,Helix-loop-helix domain; helix,CUFF.55491.1
(724 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G09530.2 | Symbols: PIF3, POC1, PAP3 | phytochrome interactin... 236 4e-62
AT1G09530.1 | Symbols: PIF3, POC1, PAP3 | phytochrome interactin... 236 4e-62
AT2G20180.1 | Symbols: PIL5, PIF1 | phytochrome interacting fact... 139 1e-32
AT2G20180.3 | Symbols: PIL5 | phytochrome interacting factor 3-l... 138 2e-32
AT2G20180.2 | Symbols: PIL5 | phytochrome interacting factor 3-l... 138 2e-32
AT2G46970.1 | Symbols: PIL1 | phytochrome interacting factor 3-l... 127 2e-29
AT4G36930.1 | Symbols: SPT | basic helix-loop-helix (bHLH) DNA-b... 121 2e-27
AT4G28790.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 115 7e-26
AT3G59060.1 | Symbols: PIL6, PIF5 | phytochrome interacting fact... 107 3e-23
AT3G59060.4 | Symbols: PIL6, PIF5 | phytochrome interacting fact... 107 3e-23
AT3G59060.3 | Symbols: PIL6, PIF5 | phytochrome interacting fact... 107 3e-23
AT3G59060.2 | Symbols: PIL6, PIF5 | phytochrome interacting fact... 107 3e-23
AT5G67110.1 | Symbols: ALC | basic helix-loop-helix (bHLH) DNA-b... 107 3e-23
AT4G28800.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 105 8e-23
AT4G00050.1 | Symbols: UNE10 | basic helix-loop-helix (bHLH) DNA... 103 3e-22
AT2G43010.2 | Symbols: PIF4, SRL2, AtPIF4 | phytochrome interact... 101 2e-21
AT2G43010.1 | Symbols: PIF4, SRL2, AtPIF4 | phytochrome interact... 100 2e-21
AT4G28815.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 94 4e-19
AT4G28790.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 93 5e-19
AT2G24260.1 | Symbols: LRL1 | LJRHL1-like 1 | chr2:10319646-1032... 89 8e-18
AT3G62090.1 | Symbols: PIL2, PIF6 | phytochrome interacting fact... 89 1e-17
AT3G62090.2 | Symbols: PIL2, PIF6 | phytochrome interacting fact... 89 1e-17
AT5G58010.1 | Symbols: LRL3 | LJRHL1-like 3 | chr5:23483670-2348... 88 2e-17
AT4G30980.1 | Symbols: LRL2 | LJRHL1-like 2 | chr4:15079489-1508... 88 2e-17
AT4G28811.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 84 3e-16
AT5G61270.1 | Symbols: PIF7 | phytochrome-interacting factor7 | ... 80 4e-15
AT5G61270.2 | Symbols: PIF7 | phytochrome-interacting factor7 | ... 80 7e-15
AT1G02340.1 | Symbols: HFR1, RSF1, FBI1, REP1 | basic helix-loop... 79 8e-15
AT1G10120.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 77 5e-14
AT5G50915.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 77 6e-14
AT5G50915.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 77 6e-14
AT1G68920.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 75 1e-13
AT1G68920.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 75 1e-13
AT1G68920.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 75 1e-13
AT3G07340.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 75 2e-13
AT3G23690.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 75 2e-13
AT5G48560.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 75 2e-13
AT5G62610.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 74 3e-13
AT1G59640.1 | Symbols: ZCW32, BPE, BPEub | BIG PETAL P | chr1:21... 74 5e-13
AT4G33880.1 | Symbols: RSL2 | ROOT HAIR DEFECTIVE 6-LIKE 2 | chr... 74 5e-13
AT2G14760.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 73 6e-13
AT1G26260.2 | Symbols: CIB5 | cryptochrome-interacting basic-hel... 73 8e-13
AT1G26260.1 | Symbols: CIB5 | cryptochrome-interacting basic-hel... 73 8e-13
AT2G18300.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 72 1e-12
AT4G36540.2 | Symbols: BEE2 | BR enhanced expression 2 | chr4:17... 72 1e-12
AT2G18300.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 72 1e-12
AT4G36540.1 | Symbols: BEE2 | BR enhanced expression 2 | chr4:17... 72 1e-12
AT5G43175.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 72 1e-12
AT1G59640.2 | Symbols: ZCW32, BPE, BPEp | BIG PETAL P | chr1:219... 72 1e-12
AT2G18300.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 72 1e-12
AT1G26260.3 | Symbols: CIB5 | cryptochrome-interacting basic-hel... 72 1e-12
AT2G14760.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 72 2e-12
AT4G34530.1 | Symbols: CIB1 | cryptochrome-interacting basic-hel... 71 2e-12
AT2G42300.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 71 3e-12
AT3G57800.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 71 3e-12
AT1G27740.1 | Symbols: RSL4 | root hair defective 6-like 4 | chr... 70 4e-12
AT1G18400.1 | Symbols: BEE1 | BR enhanced expression 1 | chr1:63... 70 8e-12
AT1G25330.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 67 4e-11
AT1G73830.2 | Symbols: BEE3 | BR enhanced expression 3 | chr1:27... 67 5e-11
AT1G73830.1 | Symbols: BEE3 | BR enhanced expression 3 | chr1:27... 67 6e-11
AT1G68240.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 67 6e-11
AT1G68240.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 66 1e-10
AT5G37800.1 | Symbols: RSL1, ATRSL1 | RHD SIX-LIKE 1 | chr5:1503... 64 5e-10
AT1G66470.1 | Symbols: RHD6 | ROOT HAIR DEFECTIVE6 | chr1:247953... 63 7e-10
AT4G09180.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 63 9e-10
AT1G63650.3 | Symbols: EGL3 | basic helix-loop-helix (bHLH) DNA-... 62 1e-09
AT1G63650.2 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-he... 62 1e-09
AT1G63650.1 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-he... 62 1e-09
AT2G28160.1 | Symbols: FIT1, ATBHLH029, FRU, BHLH029, ATBHLH29, ... 62 1e-09
AT4G02590.2 | Symbols: UNE12 | basic helix-loop-helix (bHLH) DNA... 61 2e-09
AT4G02590.1 | Symbols: UNE12 | basic helix-loop-helix (bHLH) DNA... 61 2e-09
AT1G03040.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 61 3e-09
AT1G03040.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 61 3e-09
AT4G02590.3 | Symbols: UNE12 | basic helix-loop-helix (bHLH) DNA... 61 3e-09
AT5G67110.2 | Symbols: ALC | basic helix-loop-helix (bHLH) DNA-b... 60 4e-09
AT1G35460.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 60 4e-09
AT5G67110.3 | Symbols: ALC | basic helix-loop-helix (bHLH) DNA-b... 60 5e-09
AT5G41315.1 | Symbols: GL3, MYC6.2 | basic helix-loop-helix (bHL... 60 5e-09
AT3G21330.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 59 8e-09
AT2G46510.1 | Symbols: ATAIB, AIB | ABA-inducible BHLH-type tran... 59 9e-09
AT2G42280.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 59 1e-08
AT4G00120.1 | Symbols: IND1, GT140, IND, EDA33 | basic helix-loo... 58 3e-08
AT2G22770.1 | Symbols: NAI1 | basic helix-loop-helix (bHLH) DNA-... 57 3e-08
AT2G43140.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 57 4e-08
AT1G51140.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 57 5e-08
AT2G40200.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 57 6e-08
AT2G43140.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 57 6e-08
AT4G29930.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 56 1e-07
AT5G57150.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 55 1e-07
AT2G22760.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 55 2e-07
AT1G69010.1 | Symbols: BIM2 | BES1-interacting Myc-like protein ... 55 3e-07
AT5G57150.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 54 5e-07
AT5G57150.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 54 6e-07
AT1G32640.1 | Symbols: ATMYC2, RD22BP1, JAI1, JIN1, MYC2, ZBF1 |... 53 6e-07
AT4G16430.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 53 6e-07
AT1G01260.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 53 7e-07
AT1G01260.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 53 7e-07
AT1G01260.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 53 7e-07
AT2G16910.1 | Symbols: AMS | basic helix-loop-helix (bHLH) DNA-b... 53 7e-07
AT2G31220.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 53 8e-07
AT1G05805.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 53 9e-07
AT5G08130.4 | Symbols: BIM1 | basic helix-loop-helix (bHLH) DNA-... 53 9e-07
AT5G08130.2 | Symbols: BIM1 | basic helix-loop-helix (bHLH) DNA-... 53 9e-07
AT5G38860.1 | Symbols: BIM3 | BES1-interacting Myc-like protein ... 53 9e-07
AT5G08130.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 53 1e-06
AT5G08130.5 | Symbols: BIM1 | basic helix-loop-helix (bHLH) DNA-... 53 1e-06
AT5G08130.6 | Symbols: BIM1 | basic helix-loop-helix (bHLH) DNA-... 52 1e-06
AT5G57150.4 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 52 1e-06
AT5G08130.1 | Symbols: BIM1 | basic helix-loop-helix (bHLH) DNA-... 52 1e-06
AT3G26744.4 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-hel... 52 1e-06
AT3G26744.2 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-hel... 52 1e-06
AT3G26744.1 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-hel... 52 1e-06
AT2G22750.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 52 1e-06
AT2G22750.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 52 1e-06
AT5G01310.1 | Symbols: APTX | APRATAXIN-like | chr5:125304-12896... 52 1e-06
AT5G46760.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-bind... 52 2e-06
AT3G62090.3 | Symbols: PIL2 | phytochrome interacting factor 3-l... 52 2e-06
AT3G20640.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 52 2e-06
AT4G29930.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 51 2e-06
AT4G17880.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-bind... 51 2e-06
AT4G29930.4 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 51 2e-06
AT4G29930.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 51 2e-06
AT1G12860.1 | Symbols: SCRM2, ICE2 | basic helix-loop-helix (bHL... 51 3e-06
AT3G57800.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 51 4e-06
AT2G42300.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 50 4e-06
>AT1G09530.2 | Symbols: PIF3, POC1, PAP3 | phytochrome interacting
factor 3 | chr1:3077216-3079367 FORWARD LENGTH=524
Length = 524
Score = 236 bits (603), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 200/549 (36%), Positives = 260/549 (47%), Gaps = 143/549 (26%)
Query: 1 MPLYELFRLARDKLDKEINNTRVAEQPSSPEDDFFELVWEGGQIXXXXXXXXXXXXXXXX 60
MPL+ELFRL + KL+ + PS P D+ ELVWE GQI
Sbjct: 1 MPLFELFRLTKAKLESAQD-----RNPSPPVDEVVELVWENGQISTQSQSSRSRN----- 50
Query: 61 XXXXHCIP---SHSPKGREKDAGIGYGNNTKMGKFGDLDPELNEIPMSVSSREVGLNQDE 117
IP ++S + RE IG G+ T M ++EIPMSV S GL+QD+
Sbjct: 51 ------IPPPQANSSRARE----IGNGSKTTM---------VDEIPMSVPSLMTGLSQDD 91
Query: 118 ELMPWLDY--SMDGSLQHEYGSDFLHELSG---VTEHDLTASNNYTLLDKRSTGNQVFRE 172
+ +PWL++ S+DG Y SDFL ++S V E + + N T
Sbjct: 92 DFVPWLNHHPSLDG-----YCSDFLRDVSSPVTVNEQESDMAVNQTAF------------ 134
Query: 173 PYKNAAESGNVSKGSSAEQVENARPKANTTQLYPPSLVASRASEITENNNTSNMSQNVPY 232
P + GN S P A+++Q + + Y
Sbjct: 135 PLFQRRKDGNESA-----------PAASSSQY-------------------NGFQSHSLY 164
Query: 233 G--EIAQIPSSSSDFSSLKVQRQDHVMPPNNGSAVMNFSHFARPAAIVRANLQNIXXXXX 290
G +PS ++ Q Q+ ++ N S V NFSHF RPA + N+
Sbjct: 165 GSDRARDLPSQQTNPDRF-TQTQEPLITSNKPSLV-NFSHFLRPATFAKTTNNNLHD--- 219
Query: 291 XXXXXXXXVGVKNKGAASTSFNPPESTLVDSNGECPKELTMHSQKVVAQSKADLKPLLPK 350
K K S PP G E KV+ +S A P
Sbjct: 220 ----------TKEKSPQS----PPNVFQTRVLGAKDSE-----DKVLNESVASATP---- 256
Query: 351 SLEQNAVVSKQTEPACKESAVKTDQTSKQVIAENGAKGPTAAERSAEPAVASSSVCSGNG 410
K + AC +I+E+ + ++ +E AV SSV SGN
Sbjct: 257 ---------KDNQKAC-------------LISEDSCR----KDQESEKAVVCSSVGSGNS 290
Query: 411 IDRCSNDPNQNLKRKSRDTEDSEYHSEDAEEES-VGVKKASAGR-GTGSKRSRAAEVHNL 468
+D S P+ +LKRK + +D + HSED EEES G K+A R G GSKRSR+AEVHNL
Sbjct: 291 LDGPSESPSLSLKRKHSNIQDIDCHSEDVEEESGDGRKEAGPSRTGLGSKRSRSAEVHNL 350
Query: 469 SERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGFYMHP- 527
SERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLK+LQLQVQ+MSM +G+Y+ P
Sbjct: 351 SERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKSLQLQVQIMSMASGYYLPPA 410
Query: 528 MMLPGGMQH 536
+M P GM H
Sbjct: 411 VMFPPGMGH 419
>AT1G09530.1 | Symbols: PIF3, POC1, PAP3 | phytochrome interacting
factor 3 | chr1:3077216-3079367 FORWARD LENGTH=524
Length = 524
Score = 236 bits (603), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 200/549 (36%), Positives = 260/549 (47%), Gaps = 143/549 (26%)
Query: 1 MPLYELFRLARDKLDKEINNTRVAEQPSSPEDDFFELVWEGGQIXXXXXXXXXXXXXXXX 60
MPL+ELFRL + KL+ + PS P D+ ELVWE GQI
Sbjct: 1 MPLFELFRLTKAKLESAQD-----RNPSPPVDEVVELVWENGQISTQSQSSRSRN----- 50
Query: 61 XXXXHCIP---SHSPKGREKDAGIGYGNNTKMGKFGDLDPELNEIPMSVSSREVGLNQDE 117
IP ++S + RE IG G+ T M ++EIPMSV S GL+QD+
Sbjct: 51 ------IPPPQANSSRARE----IGNGSKTTM---------VDEIPMSVPSLMTGLSQDD 91
Query: 118 ELMPWLDY--SMDGSLQHEYGSDFLHELSG---VTEHDLTASNNYTLLDKRSTGNQVFRE 172
+ +PWL++ S+DG Y SDFL ++S V E + + N T
Sbjct: 92 DFVPWLNHHPSLDG-----YCSDFLRDVSSPVTVNEQESDMAVNQTAF------------ 134
Query: 173 PYKNAAESGNVSKGSSAEQVENARPKANTTQLYPPSLVASRASEITENNNTSNMSQNVPY 232
P + GN S P A+++Q + + Y
Sbjct: 135 PLFQRRKDGNESA-----------PAASSSQY-------------------NGFQSHSLY 164
Query: 233 G--EIAQIPSSSSDFSSLKVQRQDHVMPPNNGSAVMNFSHFARPAAIVRANLQNIXXXXX 290
G +PS ++ Q Q+ ++ N S V NFSHF RPA + N+
Sbjct: 165 GSDRARDLPSQQTNPDRF-TQTQEPLITSNKPSLV-NFSHFLRPATFAKTTNNNLHD--- 219
Query: 291 XXXXXXXXVGVKNKGAASTSFNPPESTLVDSNGECPKELTMHSQKVVAQSKADLKPLLPK 350
K K S PP G E KV+ +S A P
Sbjct: 220 ----------TKEKSPQS----PPNVFQTRVLGAKDSE-----DKVLNESVASATP---- 256
Query: 351 SLEQNAVVSKQTEPACKESAVKTDQTSKQVIAENGAKGPTAAERSAEPAVASSSVCSGNG 410
K + AC +I+E+ + ++ +E AV SSV SGN
Sbjct: 257 ---------KDNQKAC-------------LISEDSCR----KDQESEKAVVCSSVGSGNS 290
Query: 411 IDRCSNDPNQNLKRKSRDTEDSEYHSEDAEEES-VGVKKASAGR-GTGSKRSRAAEVHNL 468
+D S P+ +LKRK + +D + HSED EEES G K+A R G GSKRSR+AEVHNL
Sbjct: 291 LDGPSESPSLSLKRKHSNIQDIDCHSEDVEEESGDGRKEAGPSRTGLGSKRSRSAEVHNL 350
Query: 469 SERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGFYMHP- 527
SERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLK+LQLQVQ+MSM +G+Y+ P
Sbjct: 351 SERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKSLQLQVQIMSMASGYYLPPA 410
Query: 528 MMLPGGMQH 536
+M P GM H
Sbjct: 411 VMFPPGMGH 419
>AT2G20180.1 | Symbols: PIL5, PIF1 | phytochrome interacting factor
3-like 5 | chr2:8704525-8706237 REVERSE LENGTH=407
Length = 407
Score = 139 bits (349), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 131/225 (58%), Gaps = 35/225 (15%)
Query: 346 PLLPKSL-EQNAVVSKQTEP--ACKESAV--KTDQTSKQVIAENGA---KGPTAAERSAE 397
PLL K++ ++ VS P A ES + +TD T +A GA KG A
Sbjct: 94 PLLSKAVVRESTQVSPSATPSAAASESGLTRRTDGTDSSAVAGGGAYNRKGKAVA--MTA 151
Query: 398 PAV----ASSSVCSGNGID--RCSNDPNQNLKRKSRDTEDSEYHSEDAEEESVGVKKASA 451
PA+ SSSV S + I+ + + D + +R++ T+++E SE+ ++ V
Sbjct: 152 PAIEITGTSSSVVSKSEIEPEKTNVDDRKRKEREATTTDETESRSEETKQARVST----- 206
Query: 452 GRGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQ 511
T +KRSRAAEVHNLSER+RRDRINE+M+ALQELIP CNK DKASMLDEAIEY+K+LQ
Sbjct: 207 ---TSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKSDKASMLDEAIEYMKSLQ 263
Query: 512 LQVQMMSMGAGF----------YMHPMMLPGGM-QHMHTPHMAPF 545
LQ+QMMSMG G YM M + GM Q + P PF
Sbjct: 264 LQIQMMSMGCGMMPMMYPGMQQYMPHMAMGMGMNQPIPPPSFMPF 308
>AT2G20180.3 | Symbols: PIL5 | phytochrome interacting factor 3-like
5 | chr2:8704276-8706538 REVERSE LENGTH=478
Length = 478
Score = 138 bits (347), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 131/225 (58%), Gaps = 35/225 (15%)
Query: 346 PLLPKSL-EQNAVVSKQTEP--ACKESAV--KTDQTSKQVIAENGA---KGPTAAERSAE 397
PLL K++ ++ VS P A ES + +TD T +A GA KG A
Sbjct: 165 PLLSKAVVRESTQVSPSATPSAAASESGLTRRTDGTDSSAVAGGGAYNRKGKAVA--MTA 222
Query: 398 PAV----ASSSVCSGNGID--RCSNDPNQNLKRKSRDTEDSEYHSEDAEEESVGVKKASA 451
PA+ SSSV S + I+ + + D + +R++ T+++E SE+ ++ V
Sbjct: 223 PAIEITGTSSSVVSKSEIEPEKTNVDDRKRKEREATTTDETESRSEETKQARVST----- 277
Query: 452 GRGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQ 511
T +KRSRAAEVHNLSER+RRDRINE+M+ALQELIP CNK DKASMLDEAIEY+K+LQ
Sbjct: 278 ---TSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKSDKASMLDEAIEYMKSLQ 334
Query: 512 LQVQMMSMGAGF----------YMHPMMLPGGM-QHMHTPHMAPF 545
LQ+QMMSMG G YM M + GM Q + P PF
Sbjct: 335 LQIQMMSMGCGMMPMMYPGMQQYMPHMAMGMGMNQPIPPPSFMPF 379
>AT2G20180.2 | Symbols: PIL5 | phytochrome interacting factor 3-like
5 | chr2:8704525-8706538 REVERSE LENGTH=478
Length = 478
Score = 138 bits (347), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 100/225 (44%), Positives = 131/225 (58%), Gaps = 35/225 (15%)
Query: 346 PLLPKSL-EQNAVVSKQTEP--ACKESAV--KTDQTSKQVIAENGA---KGPTAAERSAE 397
PLL K++ ++ VS P A ES + +TD T +A GA KG A
Sbjct: 165 PLLSKAVVRESTQVSPSATPSAAASESGLTRRTDGTDSSAVAGGGAYNRKGKAVA--MTA 222
Query: 398 PAV----ASSSVCSGNGID--RCSNDPNQNLKRKSRDTEDSEYHSEDAEEESVGVKKASA 451
PA+ SSSV S + I+ + + D + +R++ T+++E SE+ ++ V
Sbjct: 223 PAIEITGTSSSVVSKSEIEPEKTNVDDRKRKEREATTTDETESRSEETKQARVST----- 277
Query: 452 GRGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQ 511
T +KRSRAAEVHNLSER+RRDRINE+M+ALQELIP CNK DKASMLDEAIEY+K+LQ
Sbjct: 278 ---TSTKRSRAAEVHNLSERKRRDRINERMKALQELIPRCNKSDKASMLDEAIEYMKSLQ 334
Query: 512 LQVQMMSMGAGF----------YMHPMMLPGGM-QHMHTPHMAPF 545
LQ+QMMSMG G YM M + GM Q + P PF
Sbjct: 335 LQIQMMSMGCGMMPMMYPGMQQYMPHMAMGMGMNQPIPPPSFMPF 379
>AT2G46970.1 | Symbols: PIL1 | phytochrome interacting factor 3-like
1 | chr2:19295617-19297678 REVERSE LENGTH=416
Length = 416
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/181 (46%), Positives = 104/181 (57%), Gaps = 20/181 (11%)
Query: 366 CKESAVKTDQTSK-----QVIAENGAKGPTAAERSAEPAVASSSVCSGNGIDR----CSN 416
C ES+ D ++K +V + A RS E ASSS S G R CS
Sbjct: 128 CVESSTLIDVSAKGPKNVEVTTAPPDEQSAAVGRSTELYFASSSKFS-RGTSRDLSCCS- 185
Query: 417 DPNQNLKRKSRDTEDSE--YHSEDAEEESVGVKKASAGRGTG--SKRSRAAEVHNLSERR 472
LKRK D E+ E Y S ++++ES K R +KR R+ EVH L ER+
Sbjct: 186 -----LKRKYGDIEEEESTYLSNNSDDESDDAKTQVHARTRKPVTKRKRSTEVHKLYERK 240
Query: 473 RRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGFYMHPMMLPG 532
RRD N+KMRALQ+L+PNC K DKAS+LDEAI+Y++TLQLQVQMMSMG G P MLP
Sbjct: 241 RRDEFNKKMRALQDLLPNCYKDDKASLLDEAIKYMRTLQLQVQMMSMGNGLIRPPTMLPM 300
Query: 533 G 533
G
Sbjct: 301 G 301
>AT4G36930.1 | Symbols: SPT | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:17414167-17415945
FORWARD LENGTH=373
Length = 373
Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/76 (75%), Positives = 63/76 (82%)
Query: 461 RAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMG 520
RAAEVHNLSE+RRR RINEKM+ALQ LIPN NK DKASMLDEAIEYLK LQLQVQM++M
Sbjct: 197 RAAEVHNLSEKRRRSRINEKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLTMR 256
Query: 521 AGFYMHPMMLPGGMQH 536
G +HP+ LPG H
Sbjct: 257 NGINLHPLCLPGTTLH 272
>AT4G28790.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14218329-14220173 FORWARD
LENGTH=413
Length = 413
Score = 115 bits (289), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 83/135 (61%), Gaps = 3/135 (2%)
Query: 410 GIDRCSNDPNQNLKRKSRDTEDSEYHSEDAEEESVGVKKASAGR-GTGSKRSRAAEVHNL 468
G+ + +P Q D D E + EE +V + R T SKRSRAA +H L
Sbjct: 226 GLCKAETEPVQRQPATETDITD-ERKRKTREETNVENQGTEEARDSTSSKRSRAAIMHKL 284
Query: 469 SERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGFYMHPM 528
SERRRR +INE M+ALQEL+P C K D++SMLD+ IEY+K+LQ Q+QM SMG + PM
Sbjct: 285 SERRRRQKINEMMKALQELLPRCTKTDRSSMLDDVIEYVKSLQSQIQMFSMGH-VMIPPM 343
Query: 529 MLPGGMQHMHTPHMA 543
M G +Q + PHMA
Sbjct: 344 MYAGNIQQQYMPHMA 358
>AT3G59060.1 | Symbols: PIL6, PIF5 | phytochrome interacting factor
3-like 6 | chr3:21828189-21829895 REVERSE LENGTH=442
Length = 442
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/117 (53%), Positives = 81/117 (69%), Gaps = 19/117 (16%)
Query: 435 HSEDAEEESVG-------------VKKASAGRGTGSKRSRAAEVHNLSERRRRDRINEKM 481
H DA++ESV + S+ R ++RSRAAEVHNLSERRRRDRINE+M
Sbjct: 217 HVMDADQESVSQSDIGLTSTDDQTMGNKSSQRSGSTRRSRAAEVHNLSERRRRDRINERM 276
Query: 482 RALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGFYMH------PMMLPG 532
+ALQELIP+C++ DKAS+LDEAI+YLK+LQ+Q+Q+M MG+G PMM PG
Sbjct: 277 KALQELIPHCSRTDKASILDEAIDYLKSLQMQLQVMWMGSGMAAAAAAAASPMMFPG 333
>AT3G59060.4 | Symbols: PIL6, PIF5 | phytochrome interacting factor
3-like 6 | chr3:21828189-21829895 REVERSE LENGTH=444
Length = 444
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/117 (53%), Positives = 81/117 (69%), Gaps = 19/117 (16%)
Query: 435 HSEDAEEESVG-------------VKKASAGRGTGSKRSRAAEVHNLSERRRRDRINEKM 481
H DA++ESV + S+ R ++RSRAAEVHNLSERRRRDRINE+M
Sbjct: 217 HVMDADQESVSQSDIGLTSTDDQTMGNKSSQRSGSTRRSRAAEVHNLSERRRRDRINERM 276
Query: 482 RALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGFYMH------PMMLPG 532
+ALQELIP+C++ DKAS+LDEAI+YLK+LQ+Q+Q+M MG+G PMM PG
Sbjct: 277 KALQELIPHCSRTDKASILDEAIDYLKSLQMQLQVMWMGSGMAAAAAAAASPMMFPG 333
>AT3G59060.3 | Symbols: PIL6, PIF5 | phytochrome interacting factor
3-like 6 | chr3:21828189-21829895 REVERSE LENGTH=444
Length = 444
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/117 (53%), Positives = 81/117 (69%), Gaps = 19/117 (16%)
Query: 435 HSEDAEEESVG-------------VKKASAGRGTGSKRSRAAEVHNLSERRRRDRINEKM 481
H DA++ESV + S+ R ++RSRAAEVHNLSERRRRDRINE+M
Sbjct: 217 HVMDADQESVSQSDIGLTSTDDQTMGNKSSQRSGSTRRSRAAEVHNLSERRRRDRINERM 276
Query: 482 RALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGFYMH------PMMLPG 532
+ALQELIP+C++ DKAS+LDEAI+YLK+LQ+Q+Q+M MG+G PMM PG
Sbjct: 277 KALQELIPHCSRTDKASILDEAIDYLKSLQMQLQVMWMGSGMAAAAAAAASPMMFPG 333
>AT3G59060.2 | Symbols: PIL6, PIF5 | phytochrome interacting factor
3-like 6 | chr3:21828189-21829895 REVERSE LENGTH=444
Length = 444
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 63/117 (53%), Positives = 81/117 (69%), Gaps = 19/117 (16%)
Query: 435 HSEDAEEESVG-------------VKKASAGRGTGSKRSRAAEVHNLSERRRRDRINEKM 481
H DA++ESV + S+ R ++RSRAAEVHNLSERRRRDRINE+M
Sbjct: 217 HVMDADQESVSQSDIGLTSTDDQTMGNKSSQRSGSTRRSRAAEVHNLSERRRRDRINERM 276
Query: 482 RALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGFYMH------PMMLPG 532
+ALQELIP+C++ DKAS+LDEAI+YLK+LQ+Q+Q+M MG+G PMM PG
Sbjct: 277 KALQELIPHCSRTDKASILDEAIDYLKSLQMQLQVMWMGSGMAAAAAAAASPMMFPG 333
>AT5G67110.1 | Symbols: ALC | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr5:26785332-26786338
REVERSE LENGTH=210
Length = 210
Score = 107 bits (267), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 51/85 (60%), Positives = 66/85 (77%)
Query: 447 KKASAGRGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEY 506
K++ A + KR+ A+ HNLSE++RR +INEKM+ALQ+LIPN NK DKASMLDEAIEY
Sbjct: 79 KRSGAKQRNSLKRNIDAQFHNLSEKKRRSKINEKMKALQKLIPNSNKTDKASMLDEAIEY 138
Query: 507 LKTLQLQVQMMSMGAGFYMHPMMLP 531
LK LQLQVQ +++ G ++PM LP
Sbjct: 139 LKQLQLQVQTLAVMNGLGLNPMRLP 163
>AT4G28800.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14221970-14224075 FORWARD
LENGTH=445
Length = 445
Score = 105 bits (263), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 59/106 (55%), Positives = 72/106 (67%), Gaps = 12/106 (11%)
Query: 439 AEEESVGVKKASAGRG-TGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKA 497
A EE+ G ++A RG T KRSR AE+HNL+ERRRR++INEKM+ LQ+LIP CNK K
Sbjct: 235 AREETHGTEEA---RGSTSRKRSRTAEMHNLAERRRREKINEKMKTLQQLIPRCNKSTKV 291
Query: 498 SMLDEAIEYLKTLQLQVQMMSMGAGFYMHPMMLPGGMQHMHTPHMA 543
S LD+AIEY+K+LQ Q+Q M M PMM G Q PHMA
Sbjct: 292 STLDDAIEYVKSLQSQIQGM-------MSPMMNAGNTQQF-MPHMA 329
>AT4G00050.1 | Symbols: UNE10 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:17863-19848
FORWARD LENGTH=399
Length = 399
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/95 (57%), Positives = 65/95 (68%), Gaps = 9/95 (9%)
Query: 428 DTEDSEYHS----EDAEEESVGVKKASAGRGTGSKRSRAAEVHNLSERRRRDRINEKMRA 483
D DS HS ED EE KKA +KRSRAA +HN SER+RRD+IN++M+
Sbjct: 181 DDHDSVCHSRPQMEDEEE-----KKAGGKSSVSTKRSRAAAIHNQSERKRRDKINQRMKT 235
Query: 484 LQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMS 518
LQ+L+PN +K DKASMLDE IEYLK LQ QV MMS
Sbjct: 236 LQKLVPNSSKTDKASMLDEVIEYLKQLQAQVSMMS 270
>AT2G43010.2 | Symbols: PIF4, SRL2, AtPIF4 | phytochrome interacting
factor 4 | chr2:17887003-17888823 FORWARD LENGTH=428
Length = 428
Score = 101 bits (251), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/102 (58%), Positives = 76/102 (74%), Gaps = 4/102 (3%)
Query: 435 HSEDAEEESVGVKKASAGRGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKV 494
H++++ S + S R ++RSRAAEVHNLSERRRRDRINE+M+ALQELIP+C+K
Sbjct: 231 HTDESVSLSDAIGNKSNQRSGSNRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKT 290
Query: 495 DKASMLDEAIEYLKTLQLQVQMM----SMGAGFYMHPMMLPG 532
DKAS+LDEAI+YLK+LQLQ+Q+M M A PMM PG
Sbjct: 291 DKASILDEAIDYLKSLQLQLQVMWMGSGMAAAAASAPMMFPG 332
>AT2G43010.1 | Symbols: PIF4, SRL2, AtPIF4 | phytochrome interacting
factor 4 | chr2:17887003-17888823 FORWARD LENGTH=430
Length = 430
Score = 100 bits (250), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 60/102 (58%), Positives = 76/102 (74%), Gaps = 4/102 (3%)
Query: 435 HSEDAEEESVGVKKASAGRGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKV 494
H++++ S + S R ++RSRAAEVHNLSERRRRDRINE+M+ALQELIP+C+K
Sbjct: 231 HTDESVSLSDAIGNKSNQRSGSNRRSRAAEVHNLSERRRRDRINERMKALQELIPHCSKT 290
Query: 495 DKASMLDEAIEYLKTLQLQVQMM----SMGAGFYMHPMMLPG 532
DKAS+LDEAI+YLK+LQLQ+Q+M M A PMM PG
Sbjct: 291 DKASILDEAIDYLKSLQLQLQVMWMGSGMAAAAASAPMMFPG 332
>AT4G28815.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14228719-14230288 FORWARD
LENGTH=307
Length = 307
Score = 93.6 bits (231), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 65/96 (67%), Gaps = 4/96 (4%)
Query: 446 VKKASAGRG-TGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAI 504
++ RG T KRSRAAE+HNL+ERRRR++INE+M+ LQ+LIP CNK K SML++ I
Sbjct: 134 IQGTEEARGSTSRKRSRAAEMHNLAERRRREKINERMKTLQQLIPRCNKSTKVSMLEDVI 193
Query: 505 EYLKTLQLQVQ--MMSMGAGFYMHPMMLPGGMQ-HM 537
EY+K+L++Q+ M M G P +P Q HM
Sbjct: 194 EYVKSLEMQINQFMPHMAMGMNQPPAYIPFPSQAHM 229
>AT4G28790.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14218329-14219887 FORWARD
LENGTH=340
Length = 340
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 65/100 (65%), Gaps = 11/100 (11%)
Query: 416 NDPNQNLKRKSRDTEDSEYHSEDAEEESVGVKKASAGRGTGSKRSRAAEVHNLSERRRRD 475
D KRK+R E++ ++ EE A T SKRSRAA +H LSERRRR
Sbjct: 243 TDITDERKRKTR--EETNVENQGTEE---------ARDSTSSKRSRAAIMHKLSERRRRQ 291
Query: 476 RINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQ 515
+INE M+ALQEL+P C K D++SMLD+ IEY+K+LQ Q+Q
Sbjct: 292 KINEMMKALQELLPRCTKTDRSSMLDDVIEYVKSLQSQIQ 331
>AT2G24260.1 | Symbols: LRL1 | LJRHL1-like 1 |
chr2:10319646-10322177 REVERSE LENGTH=350
Length = 350
Score = 89.4 bits (220), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 38/63 (60%), Positives = 54/63 (85%)
Query: 457 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQM 516
++R +A + H+++ER RR+RI E+M+ALQEL+PN NK DKASMLDE I+Y+K LQLQV++
Sbjct: 140 ARRGQATDPHSIAERLRRERIAERMKALQELVPNGNKTDKASMLDEIIDYVKFLQLQVKV 199
Query: 517 MSM 519
+SM
Sbjct: 200 LSM 202
>AT3G62090.1 | Symbols: PIL2, PIF6 | phytochrome interacting factor
3-like 2 | chr3:22989097-22990495 REVERSE LENGTH=346
Length = 346
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 53/76 (69%)
Query: 458 KRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMM 517
KR R AE +N ER +R+ IN+KMR LQ L+PN +K D SMLDEAI Y+ LQLQVQMM
Sbjct: 168 KRKRNAEAYNSPERNQRNDINKKMRTLQNLLPNSHKDDNESMLDEAINYMTNLQLQVQMM 227
Query: 518 SMGAGFYMHPMMLPGG 533
+MG F MM+P G
Sbjct: 228 TMGNRFVTPSMMMPLG 243
>AT3G62090.2 | Symbols: PIL2, PIF6 | phytochrome interacting factor
3-like 2 | chr3:22989097-22990546 REVERSE LENGTH=363
Length = 363
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 54/81 (66%)
Query: 453 RGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQL 512
R KR R AE +N ER +R+ IN+KMR LQ L+PN +K D SMLDEAI Y+ LQL
Sbjct: 180 RKALVKRKRNAEAYNSPERNQRNDINKKMRTLQNLLPNSHKDDNESMLDEAINYMTNLQL 239
Query: 513 QVQMMSMGAGFYMHPMMLPGG 533
QVQMM+MG F MM+P G
Sbjct: 240 QVQMMTMGNRFVTPSMMMPLG 260
>AT5G58010.1 | Symbols: LRL3 | LJRHL1-like 3 |
chr5:23483670-23484889 REVERSE LENGTH=297
Length = 297
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 57/70 (81%), Gaps = 4/70 (5%)
Query: 457 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQM 516
++R +A + H+++ER RR+RI E+M++LQEL+PN NK DKASMLDE IEY++ LQLQV++
Sbjct: 101 ARRGQATDPHSIAERLRRERIAERMKSLQELVPNTNKTDKASMLDEIIEYVRFLQLQVKV 160
Query: 517 MSM----GAG 522
+SM GAG
Sbjct: 161 LSMSRLGGAG 170
>AT4G30980.1 | Symbols: LRL2 | LJRHL1-like 2 |
chr4:15079489-15081606 REVERSE LENGTH=310
Length = 310
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 54/63 (85%)
Query: 457 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQM 516
++R +A + H+++ER RR+RI E+M++LQEL+PN NK DKASMLDE I+Y+K LQLQV++
Sbjct: 132 ARRGQATDPHSIAERLRRERIAERMKSLQELVPNGNKTDKASMLDEIIDYVKFLQLQVKV 191
Query: 517 MSM 519
+SM
Sbjct: 192 LSM 194
>AT4G28811.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14225335-14227840 FORWARD
LENGTH=544
Length = 544
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/131 (45%), Positives = 86/131 (65%), Gaps = 6/131 (4%)
Query: 389 PTAAERSAEPAVASSSVCSGNGIDRCSNDPNQ-NLKRKSRDTEDSEYHSEDAEEESVGVK 447
P R E A ++ S +G+++ + Q +R+++ TED + E+ E G +
Sbjct: 289 PGLGRRGKEVATETAG-TSYSGVNKAETERVQIQPERETKITEDKK--REETIAEIQGTE 345
Query: 448 KASAGRGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYL 507
+A T KRSRAA++HNLSERRRR+RINE+M+ LQEL+P C K DK SML++ IEY+
Sbjct: 346 EAHGS--TSRKRSRAADMHNLSERRRRERINERMKTLQELLPRCRKTDKVSMLEDVIEYV 403
Query: 508 KTLQLQVQMMS 518
K+LQLQ+QMMS
Sbjct: 404 KSLQLQIQMMS 414
>AT5G61270.1 | Symbols: PIF7 | phytochrome-interacting factor7 |
chr5:24638873-24640439 REVERSE LENGTH=366
Length = 366
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/108 (50%), Positives = 71/108 (65%), Gaps = 10/108 (9%)
Query: 424 RKSRDTEDSEYHSEDAEEESVGVKKASAGRGTGSKRSRAAEVHNLSERRRRDRINEKMRA 483
R +T+D+E E+E+ G AGR G +R RAA +HN SERRRRDRIN++MR
Sbjct: 138 RSGSETQDTE----GDEQETRG----EAGRSNG-RRGRAAAIHNESERRRRDRINQRMRT 188
Query: 484 LQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGFYMHPMMLP 531
LQ+L+P +K DK S+LD+ IE+LK LQ QVQ MS+ A MM+P
Sbjct: 189 LQKLLPTASKADKVSILDDVIEHLKQLQAQVQFMSLRANLPQQ-MMIP 235
>AT5G61270.2 | Symbols: PIF7 | phytochrome-interacting factor7 |
chr5:24638873-24640031 REVERSE LENGTH=278
Length = 278
Score = 79.7 bits (195), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 80/134 (59%), Gaps = 16/134 (11%)
Query: 406 CSGNGIDRCSNDPNQNLKRKSRDTEDSEYH--------SEDAEEESVGVKKASAGRGTGS 457
SG + S + ++LK + T D +Y +E E+E+ G AGR G
Sbjct: 22 ASGTNMSWASFESGRSLK--TARTGDRDYFRSGSETQDTEGDEQETRG----EAGRSNG- 74
Query: 458 KRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMM 517
+R RAA +HN SERRRRDRIN++MR LQ+L+P +K DK S+LD+ IE+LK LQ QVQ M
Sbjct: 75 RRGRAAAIHNESERRRRDRINQRMRTLQKLLPTASKADKVSILDDVIEHLKQLQAQVQFM 134
Query: 518 SMGAGFYMHPMMLP 531
S+ A MM+P
Sbjct: 135 SLRANLP-QQMMIP 147
>AT1G02340.1 | Symbols: HFR1, RSF1, FBI1, REP1 | basic
helix-loop-helix (bHLH) DNA-binding superfamily protein
| chr1:465933-467685 REVERSE LENGTH=292
Length = 292
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 54/74 (72%), Gaps = 3/74 (4%)
Query: 469 SERRRRD-RINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMS-MGAGFYMH 526
S+RRRRD +++ KMR LQ+L+PNC+K DK S+LD+ IEY+K LQLQ+QMMS +G Y
Sbjct: 141 SKRRRRDEKMSNKMRKLQQLVPNCHKTDKVSVLDKTIEYMKNLQLQLQMMSTVGVNPYFL 200
Query: 527 PMMLPGGMQ-HMHT 539
P L GM HM T
Sbjct: 201 PATLGFGMHNHMLT 214
>AT1G10120.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:3304228-3305984 REVERSE
LENGTH=366
Length = 366
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 457 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVD-KASMLDEAIEYLKTLQLQVQ 515
++R +A H+L+ER RR++I+E+MR LQEL+P CNK+ KA MLDE I Y+++LQ QV+
Sbjct: 208 ARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVE 267
Query: 516 MMSM 519
+SM
Sbjct: 268 FLSM 271
>AT5G50915.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:20710764-20712252 REVERSE
LENGTH=286
Length = 286
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 457 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVD-KASMLDEAIEYLKTLQLQVQ 515
++R +A + H+L+ER RR++I+E+MR LQ L+P C+KV KA MLDE I Y++TLQ QV+
Sbjct: 138 ARRGQATDSHSLAERVRREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQVE 197
Query: 516 MMSM 519
+SM
Sbjct: 198 FLSM 201
>AT5G50915.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:20710764-20712252 REVERSE
LENGTH=286
Length = 286
Score = 76.6 bits (187), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 457 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVD-KASMLDEAIEYLKTLQLQVQ 515
++R +A + H+L+ER RR++I+E+MR LQ L+P C+KV KA MLDE I Y++TLQ QV+
Sbjct: 138 ARRGQATDSHSLAERVRREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQVE 197
Query: 516 MMSM 519
+SM
Sbjct: 198 FLSM 201
>AT1G68920.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:25915620-25917675 FORWARD
LENGTH=485
Length = 485
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 96/191 (50%), Gaps = 51/191 (26%)
Query: 365 ACKESAVKTDQTSKQVIAENGAKGPTAAERSAEPAVASSSVCSGNGIDRCSNDPNQNLKR 424
A KES V++ + +K + +G S S G + + + N K+
Sbjct: 192 AVKESTVRSSEQAKPNVPGSGN--------------VSEDTQSSGGNGQKGRETSSNTKK 237
Query: 425 KSRDTEDSE----YHSEDAEEE----------------SVGVKKASAGRGTG-------- 456
+ R+ ++SE + S+ +EEE S G KK+++G+ G
Sbjct: 238 RKRNGQNSEAAQSHRSQQSEEEPDNNGDEKRNDEQSPNSPG-KKSNSGKQQGKQSSDPPK 296
Query: 457 -------SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVD-KASMLDEAIEYLK 508
++R +A H+L+ER RR++I+E+M+ LQ+L+P CNKV KA MLDE I Y++
Sbjct: 297 DGYIHVRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQ 356
Query: 509 TLQLQVQMMSM 519
+LQ QV+ +SM
Sbjct: 357 SLQRQVEFLSM 367
>AT1G68920.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:25915620-25917675 FORWARD
LENGTH=486
Length = 486
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 457 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVD-KASMLDEAIEYLKTLQLQVQ 515
++R +A H+L+ER RR++I+E+M+ LQ+L+P CNKV KA MLDE I Y+++LQ QV+
Sbjct: 305 ARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVE 364
Query: 516 MMSM 519
+SM
Sbjct: 365 FLSM 368
>AT1G68920.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:25915620-25917675 FORWARD
LENGTH=486
Length = 486
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 457 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVD-KASMLDEAIEYLKTLQLQVQ 515
++R +A H+L+ER RR++I+E+M+ LQ+L+P CNKV KA MLDE I Y+++LQ QV+
Sbjct: 305 ARRGQATNSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVE 364
Query: 516 MMSM 519
+SM
Sbjct: 365 FLSM 368
>AT3G07340.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:2341188-2343288 REVERSE
LENGTH=456
Length = 456
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 51/64 (79%), Gaps = 1/64 (1%)
Query: 457 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVD-KASMLDEAIEYLKTLQLQVQ 515
++R +A + H+L+ER RR++I+E+M+ LQ+L+P CNKV KA MLDE I Y+++LQ QV+
Sbjct: 260 ARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVE 319
Query: 516 MMSM 519
+SM
Sbjct: 320 FLSM 323
>AT3G23690.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:8528933-8530655 REVERSE
LENGTH=371
Length = 371
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 84/145 (57%), Gaps = 26/145 (17%)
Query: 376 TSKQVIAENGAKGPTAAERSAEPAVASSSVCSGNGIDRCSNDPNQNLKRKSRDTEDSEYH 435
++ +V ENG G +RS + SS NG+++C + K + +D++
Sbjct: 137 SNSKVSGENG--GSKGGKRSKQDVAGSSK----NGVEKCDS--------KGDNKDDAK-- 180
Query: 436 SEDAEEESVGVKKASAGRGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVD 495
+A ++ + V+ ++R +A + H+L+ER RR++I+E+M LQ+L+P CN++
Sbjct: 181 PPEAPKDYIHVR---------ARRGQATDSHSLAERARREKISERMTLLQDLVPGCNRIT 231
Query: 496 -KASMLDEAIEYLKTLQLQVQMMSM 519
KA MLDE I Y+++LQ QV+ +SM
Sbjct: 232 GKAVMLDEIINYVQSLQRQVEFLSM 256
>AT5G48560.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:19684160-19686871 FORWARD
LENGTH=498
Length = 498
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 457 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVD-KASMLDEAIEYLKTLQLQVQ 515
++R +A + H+L+ER RR++I E+M+ LQ+L+P CNKV KA MLDE I Y+++LQ QV+
Sbjct: 303 ARRGQATDSHSLAERVRREKIGERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVE 362
Query: 516 MMSM 519
+SM
Sbjct: 363 FLSM 366
>AT5G62610.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:25133117-25134600 REVERSE
LENGTH=281
Length = 281
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 51/64 (79%), Gaps = 1/64 (1%)
Query: 457 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNK-VDKASMLDEAIEYLKTLQLQVQ 515
++R +A + H+L+ER RR++I+EKM ALQ++IP CNK + KA +LDE I Y+++LQ QV+
Sbjct: 155 ARRGQATDRHSLAERARREKISEKMTALQDIIPGCNKIIGKALVLDEIINYIQSLQRQVE 214
Query: 516 MMSM 519
+SM
Sbjct: 215 FLSM 218
>AT1G59640.1 | Symbols: ZCW32, BPE, BPEub | BIG PETAL P |
chr1:21909464-21911030 REVERSE LENGTH=264
Length = 264
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 51/64 (79%), Gaps = 1/64 (1%)
Query: 457 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKV-DKASMLDEAIEYLKTLQLQVQ 515
++R +A + H+L+ER RR++I+E+M+ LQ+L+P CNKV KA +LDE I Y+++LQ QV+
Sbjct: 138 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVE 197
Query: 516 MMSM 519
+SM
Sbjct: 198 FLSM 201
>AT4G33880.1 | Symbols: RSL2 | ROOT HAIR DEFECTIVE 6-LIKE 2 |
chr4:16239566-16241052 REVERSE LENGTH=352
Length = 352
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 52/78 (66%)
Query: 455 TGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQV 514
T + R A + +L R+RR+RINE++R LQ L+PN KVD ++ML+EA+ Y+K LQLQ+
Sbjct: 266 TRASRGAATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQI 325
Query: 515 QMMSMGAGFYMHPMMLPG 532
+++S + P+ G
Sbjct: 326 KLLSSDDLWMYAPIAFNG 343
>AT2G14760.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:6321840-6323312 REVERSE
LENGTH=328
Length = 328
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 55/80 (68%), Gaps = 1/80 (1%)
Query: 455 TGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQV 514
T + R A + +L R+RR+RINE++R LQ L+PN KVD ++ML+EA++Y+K LQLQ+
Sbjct: 237 TRASRGAATDPQSLYARKRRERINERLRILQHLVPNGTKVDISTMLEEAVQYVKFLQLQI 296
Query: 515 QMMSMGAGFYMHPMMLPGGM 534
+++S +M+ + GM
Sbjct: 297 KLLS-SDDLWMYAPIAYNGM 315
>AT1G26260.2 | Symbols: CIB5 | cryptochrome-interacting
basic-helix-loop-helix 5 | chr1:9087214-9089035 FORWARD
LENGTH=390
Length = 390
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 78/147 (53%), Gaps = 20/147 (13%)
Query: 393 ERSAEPAVASSSVCSGNGID--RCSNDPNQNL-----KRKSRDTEDSEYHSEDAEE---- 441
ERS S GNG D +C ++ KR +D E+ E + E+
Sbjct: 142 ERSINNVSEDSQSSGGNGHDDAKCGQTSSKGFSSKKRKRIGKDCEEEEDKKQKDEQSPTS 201
Query: 442 ---ESVGVKKASAGRGTG-----SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNK 493
++ K+ S G ++R +A H+L+ER RR++I+E+M+ LQ+L+P C+K
Sbjct: 202 NANKTNSEKQPSDSLKDGYIHMRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDK 261
Query: 494 VD-KASMLDEAIEYLKTLQLQVQMMSM 519
V KA MLDE I Y+++LQ Q++ +SM
Sbjct: 262 VTGKAVMLDEIINYVQSLQCQIEFLSM 288
>AT1G26260.1 | Symbols: CIB5 | cryptochrome-interacting
basic-helix-loop-helix 5 | chr1:9087214-9089035 FORWARD
LENGTH=390
Length = 390
Score = 72.8 bits (177), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 78/147 (53%), Gaps = 20/147 (13%)
Query: 393 ERSAEPAVASSSVCSGNGID--RCSNDPNQNL-----KRKSRDTEDSEYHSEDAEE---- 441
ERS S GNG D +C ++ KR +D E+ E + E+
Sbjct: 142 ERSINNVSEDSQSSGGNGHDDAKCGQTSSKGFSSKKRKRIGKDCEEEEDKKQKDEQSPTS 201
Query: 442 ---ESVGVKKASAGRGTG-----SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNK 493
++ K+ S G ++R +A H+L+ER RR++I+E+M+ LQ+L+P C+K
Sbjct: 202 NANKTNSEKQPSDSLKDGYIHMRARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDK 261
Query: 494 VD-KASMLDEAIEYLKTLQLQVQMMSM 519
V KA MLDE I Y+++LQ Q++ +SM
Sbjct: 262 VTGKAVMLDEIINYVQSLQCQIEFLSM 288
>AT2G18300.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:7953022-7954446 REVERSE
LENGTH=337
Length = 337
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 457 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVD-KASMLDEAIEYLKTLQLQVQ 515
++R +A + H+L+ER RR++I++KM+ LQ+++P CNKV KA MLDE I Y++ LQ QV+
Sbjct: 187 ARRGQATDRHSLAERARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQVE 246
Query: 516 MMSM 519
+SM
Sbjct: 247 FLSM 250
>AT4G36540.2 | Symbols: BEE2 | BR enhanced expression 2 |
chr4:17243699-17244965 FORWARD LENGTH=302
Length = 302
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 457 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVD-KASMLDEAIEYLKTLQLQVQ 515
++R A + H+L+ER RR++I++KM+ LQ+++P CNKV KA MLDE I Y+++LQ QV+
Sbjct: 143 ARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNKVTGKAGMLDEIINYVQSLQQQVE 202
Query: 516 MMSM 519
+SM
Sbjct: 203 FLSM 206
>AT2G18300.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:7953022-7954446 REVERSE
LENGTH=335
Length = 335
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 457 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVD-KASMLDEAIEYLKTLQLQVQ 515
++R +A + H+L+ER RR++I++KM+ LQ+++P CNKV KA MLDE I Y++ LQ QV+
Sbjct: 187 ARRGQATDRHSLAERARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQVE 246
Query: 516 MMSM 519
+SM
Sbjct: 247 FLSM 250
>AT4G36540.1 | Symbols: BEE2 | BR enhanced expression 2 |
chr4:17243699-17244965 FORWARD LENGTH=304
Length = 304
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 457 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVD-KASMLDEAIEYLKTLQLQVQ 515
++R A + H+L+ER RR++I++KM+ LQ+++P CNKV KA MLDE I Y+++LQ QV+
Sbjct: 143 ARRGEATDRHSLAERARREKISKKMKCLQDIVPGCNKVTGKAGMLDEIINYVQSLQQQVE 202
Query: 516 MMSM 519
+SM
Sbjct: 203 FLSM 206
>AT5G43175.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:17334261-17335234 FORWARD
LENGTH=223
Length = 223
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 71/117 (60%), Gaps = 19/117 (16%)
Query: 432 SEYHSEDAEEESVGV---------KKASAGRGTGSKRSRAAEVHNLSERRRRDRINEKMR 482
S Y+S D +E+++G+ +KA A RG A++ +L R+RR+RIN++++
Sbjct: 107 SSYNSSD-DEKALGLVSNTSKSLKRKAKANRGI------ASDPQSLYARKRRERINDRLK 159
Query: 483 ALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGFYMHPMM---LPGGMQH 536
LQ L+PN KVD ++ML++A+ Y+K LQLQ++++S + P+ L G+ H
Sbjct: 160 TLQSLVPNGTKVDISTMLEDAVHYVKFLQLQIKLLSSEDLWMYAPLAHNGLNMGLHH 216
>AT1G59640.2 | Symbols: ZCW32, BPE, BPEp | BIG PETAL P |
chr1:21909635-21911030 REVERSE LENGTH=343
Length = 343
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 51/64 (79%), Gaps = 1/64 (1%)
Query: 457 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKV-DKASMLDEAIEYLKTLQLQVQ 515
++R +A + H+L+ER RR++I+E+M+ LQ+L+P CNKV KA +LDE I Y+++LQ QV+
Sbjct: 138 ARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVE 197
Query: 516 MMSM 519
+SM
Sbjct: 198 FLSM 201
>AT2G18300.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:7952546-7954446 REVERSE
LENGTH=364
Length = 364
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 457 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVD-KASMLDEAIEYLKTLQLQVQ 515
++R +A + H+L+ER RR++I++KM+ LQ+++P CNKV KA MLDE I Y++ LQ QV+
Sbjct: 187 ARRGQATDRHSLAERARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQVE 246
Query: 516 MMSM 519
+SM
Sbjct: 247 FLSM 250
>AT1G26260.3 | Symbols: CIB5 | cryptochrome-interacting
basic-helix-loop-helix 5 | chr1:9087214-9089035 FORWARD
LENGTH=339
Length = 339
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 457 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVD-KASMLDEAIEYLKTLQLQVQ 515
++R +A H+L+ER RR++I+E+M+ LQ+L+P C+KV KA MLDE I Y+++LQ Q++
Sbjct: 174 ARRGQATNSHSLAERVRREKISERMKFLQDLVPGCDKVTGKAVMLDEIINYVQSLQCQIE 233
Query: 516 MMSM 519
+SM
Sbjct: 234 FLSM 237
>AT2G14760.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:6321840-6323312 REVERSE
LENGTH=341
Length = 341
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 67/113 (59%), Gaps = 10/113 (8%)
Query: 431 DSEYHSEDAEEESV----GVKKASAGRGTG-----SKRSRAAEVHNLSERRRRDRINEKM 481
D+ ED E+ G +AS G T ++ + +VH + ++RR+RINE++
Sbjct: 217 DTFLSKEDGEDSKALNLNGKTRASRGAATDPQSLYARLKQLNKVHCMMVQKRRERINERL 276
Query: 482 RALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGFYMHPMMLPGGM 534
R LQ L+PN KVD ++ML+EA++Y+K LQLQ++++S +M+ + GM
Sbjct: 277 RILQHLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLS-SDDLWMYAPIAYNGM 328
>AT4G34530.1 | Symbols: CIB1 | cryptochrome-interacting
basic-helix-loop-helix 1 | chr4:16498466-16499946
FORWARD LENGTH=335
Length = 335
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 51/64 (79%), Gaps = 1/64 (1%)
Query: 457 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVD-KASMLDEAIEYLKTLQLQVQ 515
++R +A + H+++ER RR++I+E+M+ LQ+L+P C+K+ KA MLDE I Y+++LQ Q++
Sbjct: 174 ARRGQATDSHSIAERVRREKISERMKFLQDLVPGCDKITGKAGMLDEIINYVQSLQRQIE 233
Query: 516 MMSM 519
+SM
Sbjct: 234 FLSM 237
>AT2G42300.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:17621542-17624635 FORWARD
LENGTH=327
Length = 327
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 50/64 (78%), Gaps = 1/64 (1%)
Query: 457 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVD-KASMLDEAIEYLKTLQLQVQ 515
++R +A + H+L+ER RR++IN +M+ LQEL+P C+K+ A +LDE I +++TLQ QV+
Sbjct: 187 ARRGQATDNHSLAERARREKINARMKLLQELVPGCDKIQGTALVLDEIINHVQTLQRQVE 246
Query: 516 MMSM 519
M+SM
Sbjct: 247 MLSM 250
>AT3G57800.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:21408034-21411321 REVERSE
LENGTH=379
Length = 379
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 91/176 (51%), Gaps = 29/176 (16%)
Query: 363 EPACKESAVKTDQTSKQVIAENGAKGPTAAERS----------AEPAVASSS--VCSGNG 410
E A + S + T+Q + + E PT++ S EPA SS + S +
Sbjct: 104 ERAARFSVIATEQQNGNISGET----PTSSVPSNSSANLDRVKTEPAETDSSQRLISDSA 159
Query: 411 IDR---CSNDPNQNLKRKSRDTEDSEYHSEDA---EEESVGVKKASAGRGTGSKRSRAAE 464
I+ C N N+N KRK + + ++ E E + A RG +A +
Sbjct: 160 IENQIPCPNQNNRNGKRKDFEKKGKSSTKKNKSSEENEKLPYVHVRARRG------QATD 213
Query: 465 VHNLSERRRRDRINEKMRALQELIPNCNKVD-KASMLDEAIEYLKTLQLQVQMMSM 519
H+L+ER RR++IN +M+ LQEL+P C+K+ A +LDE I ++++LQ QV+M+SM
Sbjct: 214 SHSLAERARREKINARMKLLQELVPGCDKIQGTALVLDEIINHVQSLQRQVEMLSM 269
>AT1G27740.1 | Symbols: RSL4 | root hair defective 6-like 4 |
chr1:9654753-9655806 FORWARD LENGTH=258
Length = 258
Score = 70.5 bits (171), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 65/107 (60%), Gaps = 11/107 (10%)
Query: 435 HSEDAEEESV-GVK-KASAGRGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCN 492
+S D E+ SV VK K A +GT A + +L R+RR++INE+++ LQ L+PN
Sbjct: 151 NSSDDEKASVTSVKGKTRATKGT------ATDPQSLYARKRREKINERLKTLQNLVPNGT 204
Query: 493 KVDKASMLDEAIEYLKTLQLQVQMMSMGAGFYMHPMMLPG---GMQH 536
KVD ++ML+EA+ Y+K LQLQ++++S + P+ G G H
Sbjct: 205 KVDISTMLEEAVHYVKFLQLQIKLLSSDDLWMYAPLAYNGLDMGFHH 251
>AT1G18400.1 | Symbols: BEE1 | BR enhanced expression 1 |
chr1:6331464-6333576 FORWARD LENGTH=260
Length = 260
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 52/73 (71%), Gaps = 5/73 (6%)
Query: 457 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNK-VDKASMLDEAIEYLKTLQLQVQ 515
++R +A + H+L+ER RR +INE++R LQ+++P C K + A+MLDE I Y+++LQ QV+
Sbjct: 147 ARRGQATDSHSLAERVRRGKINERLRCLQDMVPGCYKAMGMATMLDEIINYVQSLQNQVE 206
Query: 516 MMSM----GAGFY 524
+SM + FY
Sbjct: 207 FLSMKLTAASSFY 219
>AT1G25330.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:8880515-8882018 REVERSE
LENGTH=223
Length = 223
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 457 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNK-VDKASMLDEAIEYLKTLQLQVQ 515
+KR +A + H+L+ER RR++INE+++ LQ+L+P C K + A MLD I+Y+++LQ Q++
Sbjct: 106 AKRGQATDSHSLAERVRREKINERLKCLQDLVPGCYKAMGMAVMLDVIIDYVRSLQNQIE 165
Query: 516 MMSM 519
+SM
Sbjct: 166 FLSM 169
>AT1G73830.2 | Symbols: BEE3 | BR enhanced expression 3 |
chr1:27760027-27761346 FORWARD LENGTH=260
Length = 260
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 457 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNK-VDKASMLDEAIEYLKTLQLQVQ 515
++R +A + H+++ER RR +INE+++ LQ+++P C K + A+MLDE I Y+++LQ QV+
Sbjct: 149 ARRGQATDSHSIAERVRRGKINERLKCLQDIVPGCYKTMGMATMLDEIINYVQSLQNQVE 208
Query: 516 MMSM 519
+SM
Sbjct: 209 FLSM 212
>AT1G73830.1 | Symbols: BEE3 | BR enhanced expression 3 |
chr1:27760027-27761346 FORWARD LENGTH=261
Length = 261
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 49/64 (76%), Gaps = 1/64 (1%)
Query: 457 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNK-VDKASMLDEAIEYLKTLQLQVQ 515
++R +A + H+++ER RR +INE+++ LQ+++P C K + A+MLDE I Y+++LQ QV+
Sbjct: 149 ARRGQATDSHSIAERVRRGKINERLKCLQDIVPGCYKTMGMATMLDEIINYVQSLQNQVE 208
Query: 516 MMSM 519
+SM
Sbjct: 209 FLSM 212
>AT1G68240.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:25575179-25576066 REVERSE
LENGTH=185
Length = 185
Score = 66.6 bits (161), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 62/116 (53%), Gaps = 13/116 (11%)
Query: 431 DSEYHSEDAEEESVGVKKASAGRGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPN 490
D E H E+ +EES + +KR R+ E + E++RR I +K+ LQ L+PN
Sbjct: 47 DHEKHDEEPDEESYRM----------AKRQRSMEYRMMMEKKRRKEIKDKVDILQGLMPN 96
Query: 491 -CNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGFYMHPMMLPGGMQHMHTPHMAPF 545
C K D AS L+ IEY+K+L+ QV +MSM + P+ P P M+P+
Sbjct: 97 HCTKPDLASKLENIIEYIKSLKYQVDVMSM--AYTTTPVYTPPFYAAAQAPCMSPW 150
>AT1G68240.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:25575280-25576066 REVERSE
LENGTH=174
Length = 174
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 62/116 (53%), Gaps = 13/116 (11%)
Query: 431 DSEYHSEDAEEESVGVKKASAGRGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPN 490
D E H E+ +EES + +KR R+ E + E++RR I +K+ LQ L+PN
Sbjct: 47 DHEKHDEEPDEESYRM----------AKRQRSMEYRMMMEKKRRKEIKDKVDILQGLMPN 96
Query: 491 -CNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGFYMHPMMLPGGMQHMHTPHMAPF 545
C K D AS L+ IEY+K+L+ QV +MSM + P+ P P M+P+
Sbjct: 97 HCTKPDLASKLENIIEYIKSLKYQVDVMSM--AYTTTPVYTPPFYAAAQAPCMSPW 150
>AT5G37800.1 | Symbols: RSL1, ATRSL1 | RHD SIX-LIKE 1 |
chr5:15036197-15037574 FORWARD LENGTH=307
Length = 307
Score = 63.5 bits (153), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 42/51 (82%)
Query: 468 LSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMS 518
L+ + RR+RI+E+++ LQEL+PN KVD +ML++AI Y+K LQ+QV++++
Sbjct: 214 LAAKNRRERISERLKVLQELVPNGTKVDLVTMLEKAIGYVKFLQVQVKVLA 264
>AT1G66470.1 | Symbols: RHD6 | ROOT HAIR DEFECTIVE6 |
chr1:24795326-24796598 FORWARD LENGTH=298
Length = 298
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 42/51 (82%)
Query: 468 LSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMMS 518
L+ + RR+RI+E+++ LQEL+PN KVD +ML++AI Y+K LQ+QV++++
Sbjct: 208 LAAKNRRERISERLKILQELVPNGTKVDLVTMLEKAISYVKFLQVQVKVLA 258
>AT4G09180.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:5847513-5849500 FORWARD
LENGTH=262
Length = 262
Score = 62.8 bits (151), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 56/88 (63%), Gaps = 8/88 (9%)
Query: 432 SEYHSEDAEEESVGVKKASAGRGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNC 491
S+ + E+ E+SV + +KR A +++ER RR RI++++R LQEL+PN
Sbjct: 168 SDMNMENLMEDSVAFR-------VRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNM 220
Query: 492 NK-VDKASMLDEAIEYLKTLQLQVQMMS 518
+K + A ML+EA+EY+K LQ Q+Q ++
Sbjct: 221 DKQTNTADMLEEAVEYVKVLQRQIQELT 248
>AT1G63650.3 | Symbols: EGL3 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr1:23599809-23602734
FORWARD LENGTH=596
Length = 596
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 41/52 (78%)
Query: 466 HNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMM 517
H LSE++RR+++NE+ L+ +IP+ +K+DK S+LD+ IEYL+ LQ +VQ +
Sbjct: 406 HALSEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQDLQKRVQEL 457
>AT1G63650.2 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein |
chr1:23599809-23602734 FORWARD LENGTH=596
Length = 596
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 41/52 (78%)
Query: 466 HNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMM 517
H LSE++RR+++NE+ L+ +IP+ +K+DK S+LD+ IEYL+ LQ +VQ +
Sbjct: 406 HALSEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQDLQKRVQEL 457
>AT1G63650.1 | Symbols: EGL3, EGL1, ATMYC-2 | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein |
chr1:23599809-23602734 FORWARD LENGTH=596
Length = 596
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 41/52 (78%)
Query: 466 HNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMM 517
H LSE++RR+++NE+ L+ +IP+ +K+DK S+LD+ IEYL+ LQ +VQ +
Sbjct: 406 HALSEKKRREKLNERFMTLRSIIPSISKIDKVSILDDTIEYLQDLQKRVQEL 457
>AT2G28160.1 | Symbols: FIT1, ATBHLH029, FRU, BHLH029, ATBHLH29,
ATFIT1 | FER-like regulator of iron uptake |
chr2:12004713-12005908 FORWARD LENGTH=318
Length = 318
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 37/111 (33%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Query: 430 EDSEYHSEDAEEESVGVKKASAGRGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELIP 489
E+ E D ++ S R T + RSR +SERRRR R+ +K+ AL+ L+P
Sbjct: 100 EEDEEDYNDGDDSSATTTNNDGTRKTKTDRSRTL----ISERRRRGRMKDKLYALRSLVP 155
Query: 490 NCNKVDKASMLDEAIEYLKTLQLQVQMMSMGAGFYMHPMMLPGGMQHMHTP 540
N K+DKAS++ +A+ Y++ LQ Q + + + GG Q H P
Sbjct: 156 NITKMDKASIVGDAVLYVQELQSQAKKLKSDIAGLEASLNSTGGYQE-HAP 205
>AT4G02590.2 | Symbols: UNE12 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:1137968-1140306
REVERSE LENGTH=310
Length = 310
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 56/70 (80%), Gaps = 4/70 (5%)
Query: 457 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQM 516
++R +A + H+++ER RR+RI E++RALQEL+P NK D+A+M+DE ++Y+K L+LQV++
Sbjct: 148 ARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLRLQVKV 207
Query: 517 MSM----GAG 522
+SM GAG
Sbjct: 208 LSMSRLGGAG 217
>AT4G02590.1 | Symbols: UNE12 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:1137968-1140306
REVERSE LENGTH=310
Length = 310
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 56/70 (80%), Gaps = 4/70 (5%)
Query: 457 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQM 516
++R +A + H+++ER RR+RI E++RALQEL+P NK D+A+M+DE ++Y+K L+LQV++
Sbjct: 148 ARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLRLQVKV 207
Query: 517 MSM----GAG 522
+SM GAG
Sbjct: 208 LSMSRLGGAG 217
>AT1G03040.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:704279-706457 REVERSE
LENGTH=302
Length = 302
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 56/70 (80%), Gaps = 4/70 (5%)
Query: 457 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQM 516
++R +A + H+++ER RR+RI E++R+LQEL+P NK D+A+M+DE ++Y+K L+LQV++
Sbjct: 146 ARRGQATDPHSIAERLRRERIAERIRSLQELVPTVNKTDRAAMIDEIVDYVKFLRLQVKV 205
Query: 517 MSM----GAG 522
+SM GAG
Sbjct: 206 LSMSRLGGAG 215
>AT1G03040.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:704279-706457 REVERSE
LENGTH=297
Length = 297
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 56/70 (80%), Gaps = 4/70 (5%)
Query: 457 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQM 516
++R +A + H+++ER RR+RI E++R+LQEL+P NK D+A+M+DE ++Y+K L+LQV++
Sbjct: 141 ARRGQATDPHSIAERLRRERIAERIRSLQELVPTVNKTDRAAMIDEIVDYVKFLRLQVKV 200
Query: 517 MSM----GAG 522
+SM GAG
Sbjct: 201 LSMSRLGGAG 210
>AT4G02590.3 | Symbols: UNE12 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr4:1137968-1140117
REVERSE LENGTH=247
Length = 247
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 56/70 (80%), Gaps = 4/70 (5%)
Query: 457 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQM 516
++R +A + H+++ER RR+RI E++RALQEL+P NK D+A+M+DE ++Y+K L+LQV++
Sbjct: 85 ARRGQATDPHSIAERLRRERIAERIRALQELVPTVNKTDRAAMIDEIVDYVKFLRLQVKV 144
Query: 517 MSM----GAG 522
+SM GAG
Sbjct: 145 LSMSRLGGAG 154
>AT5G67110.2 | Symbols: ALC | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr5:26785684-26786338
REVERSE LENGTH=150
Length = 150
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 43/61 (70%)
Query: 447 KKASAGRGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEY 506
K++ A + KR+ A+ HNLSE++RR +INEKM+ALQ+LIPN NKV+++ E +
Sbjct: 79 KRSGAKQRNSLKRNIDAQFHNLSEKKRRSKINEKMKALQKLIPNSNKVNQSLFESEIVRN 138
Query: 507 L 507
+
Sbjct: 139 I 139
>AT1G35460.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:13040092-13041907 FORWARD
LENGTH=259
Length = 259
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 457 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNK-VDKASMLDEAIEYLKTLQLQVQ 515
+KR A +++ER RR RI++++R LQEL+PN +K + A ML+EA+EY+K LQ Q+Q
Sbjct: 183 AKRGCATHPRSIAERVRRTRISDRIRRLQELVPNMDKQTNTADMLEEAVEYVKALQSQIQ 242
Query: 516 MMS 518
++
Sbjct: 243 ELT 245
>AT5G67110.3 | Symbols: ALC | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr5:26785332-26786338
REVERSE LENGTH=188
Length = 188
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 46/85 (54%), Gaps = 22/85 (25%)
Query: 447 KKASAGRGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEY 506
K++ A + KR+ A+ HNLSE K DKASMLDEAIEY
Sbjct: 79 KRSGAKQRNSLKRNIDAQFHNLSE----------------------KTDKASMLDEAIEY 116
Query: 507 LKTLQLQVQMMSMGAGFYMHPMMLP 531
LK LQLQVQ +++ G ++PM LP
Sbjct: 117 LKQLQLQVQTLAVMNGLGLNPMRLP 141
>AT5G41315.1 | Symbols: GL3, MYC6.2 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr5:16529457-16532866
FORWARD LENGTH=637
Length = 637
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 41/52 (78%)
Query: 466 HNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMM 517
H + E++RR+++NE+ L+++IP+ NK+DK S+LD+ IEYL+ L+ +VQ +
Sbjct: 442 HAVLEKKRREKLNERFMTLRKIIPSINKIDKVSILDDTIEYLQELERRVQEL 493
>AT3G21330.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:7507720-7508841 FORWARD
LENGTH=373
Length = 373
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 38/50 (76%)
Query: 468 LSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMM 517
++ R+RR+RI+EK+R LQ L+P K+D ASMLDEA YLK L+ QV+ +
Sbjct: 282 VAARQRRERISEKIRVLQTLVPGGTKMDTASMLDEAANYLKFLRAQVKAL 331
>AT2G46510.1 | Symbols: ATAIB, AIB | ABA-inducible BHLH-type
transcription factor | chr2:19091187-19092887 REVERSE
LENGTH=566
Length = 566
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 42/52 (80%)
Query: 466 HNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMM 517
H +ER+RR+++N++ AL+ ++PN +K+DKAS+L +AI Y+K LQ +V++M
Sbjct: 396 HVEAERQRREKLNQRFYALRSVVPNISKMDKASLLGDAISYIKELQEKVKIM 447
>AT2G42280.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:17611428-17613163 REVERSE
LENGTH=359
Length = 359
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Query: 457 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNK-VDKASMLDEAIEYLKTLQLQVQ 515
+KR A +++ER RR RI+E+MR LQEL+PN +K + + MLD A++Y+K LQ Q +
Sbjct: 281 AKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTSDMLDLAVDYIKDLQRQYK 340
Query: 516 MM 517
++
Sbjct: 341 IL 342
>AT4G00120.1 | Symbols: IND1, GT140, IND, EDA33 | basic
helix-loop-helix (bHLH) DNA-binding superfamily protein
| chr4:42601-43197 REVERSE LENGTH=198
Length = 198
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 37/47 (78%)
Query: 471 RRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMM 517
RRRR+RI+EK+R L+ ++P K+D ASMLDEAI Y K L+ QV+++
Sbjct: 128 RRRRERISEKIRILKRIVPGGAKMDTASMLDEAIRYTKFLKRQVRIL 174
>AT2G22770.1 | Symbols: NAI1 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr2:9684858-9686321
FORWARD LENGTH=320
Length = 320
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 53/84 (63%)
Query: 434 YHSEDAEEESVGVKKASAGRGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNK 493
+ ++ + ++ VG K+ G + + H L+ER+RR ++NE++ AL L+P K
Sbjct: 101 FSNQVSMDQKVGSKRKDCVNNGGRREPHLLKEHVLAERKRRQKLNERLIALSALLPGLKK 160
Query: 494 VDKASMLDEAIEYLKTLQLQVQMM 517
DKA++L++AI++LK LQ +V+ +
Sbjct: 161 TDKATVLEDAIKHLKQLQERVKKL 184
>AT2G43140.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:17931680-17935639 REVERSE
LENGTH=309
Length = 309
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Query: 457 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNK-VDKASMLDEAIEYLKTLQLQVQ 515
+KR A +++ER RR RI+ K++ LQEL+PN +K A MLD A+E++K LQ QV+
Sbjct: 233 AKRGFATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVEHIKGLQHQVE 292
Query: 516 MMSMG 520
+ G
Sbjct: 293 SLEKG 297
>AT1G51140.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:18943802-18945613 REVERSE
LENGTH=379
Length = 379
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Query: 457 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCN-KVDKASMLDEAIEYLKTLQLQVQ 515
+KR A +++ER RR +I+E+MR LQ+L+PN + + + A MLD A++Y+K LQ QV+
Sbjct: 306 AKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDTQTNTADMLDLAVQYIKDLQEQVK 365
Query: 516 MM 517
+
Sbjct: 366 AL 367
>AT2G40200.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:16791098-16792027 FORWARD
LENGTH=254
Length = 254
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 36/46 (78%)
Query: 466 HNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQ 511
H L+E+RRRDRIN + AL++L+PN +K+DKA++L IE +K L+
Sbjct: 67 HRLAEKRRRDRINSHLTALRKLVPNSDKLDKAALLATVIEQVKELK 112
>AT2G43140.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:17932376-17935639 REVERSE
LENGTH=297
Length = 297
Score = 56.6 bits (135), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 42/61 (68%), Gaps = 1/61 (1%)
Query: 457 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNK-VDKASMLDEAIEYLKTLQLQVQ 515
+KR A +++ER RR RI+ K++ LQEL+PN +K A MLD A+E++K LQ QV+
Sbjct: 235 AKRGFATHPRSIAERERRTRISGKLKKLQELVPNMDKQTSYADMLDLAVEHIKGLQHQVE 294
Query: 516 M 516
+
Sbjct: 295 V 295
>AT4G29930.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14644108-14647449 FORWARD
LENGTH=225
Length = 225
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 69/115 (60%), Gaps = 12/115 (10%)
Query: 434 YHSEDAEEESVGVKKASAGRGT-----GSKRSRAAEVHNLSERRRRDRINEKMRALQELI 488
+ +++ E +S +++A +G G G+ S A+ + +SER RR ++N+++ AL+ ++
Sbjct: 18 FQNQELEFDSWPMEEAFSGSGESSSPDGAATSPASSKNVVSERNRRQKLNQRLFALRSVV 77
Query: 489 PNCNKVDKASMLDEAIEYL-------KTLQLQVQMMSMGAGFYMHPMMLPGGMQH 536
PN +K+DKAS++ ++I+Y+ KTL+ +++ + + +PM +QH
Sbjct: 78 PNISKLDKASVIKDSIDYMQELIDQEKTLEAEIRELESRSTLLENPMDYSTRVQH 132
>AT5G57150.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:23152361-23154872 FORWARD
LENGTH=247
Length = 247
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 51/84 (60%), Gaps = 3/84 (3%)
Query: 430 EDSEYHSEDAEEESVGVKKASAGRGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELIP 489
ED EY S EE G +S+ G S A + +SER RR ++N+++ AL+ ++P
Sbjct: 22 EDFEYDSWPLEEAISGSYDSSSPDGAASS---PASKNIVSERNRRQKLNQRLFALRSVVP 78
Query: 490 NCNKVDKASMLDEAIEYLKTLQLQ 513
N K+DKAS++ +AI Y++ LQ +
Sbjct: 79 NITKMDKASIIKDAISYIEGLQYE 102
>AT2G22760.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:9678012-9679165 FORWARD
LENGTH=295
Length = 295
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 46/74 (62%), Gaps = 7/74 (9%)
Query: 451 AGRGT-------GSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEA 503
GRGT G++ A+ H L+ER+RR++++EK AL L+P K DK ++LD+A
Sbjct: 98 VGRGTKRKTCSHGTRSPVLAKEHVLAERKRREKLSEKFIALSALLPGLKKADKVTILDDA 157
Query: 504 IEYLKTLQLQVQMM 517
I +K LQ Q++ +
Sbjct: 158 ISRMKQLQEQLRTL 171
>AT1G69010.1 | Symbols: BIM2 | BES1-interacting Myc-like protein 2 |
chr1:25941804-25943599 FORWARD LENGTH=311
Length = 311
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 38/51 (74%), Gaps = 1/51 (1%)
Query: 466 HNLSERRRRDRINEKMRALQELIPNC-NKVDKASMLDEAIEYLKTLQLQVQ 515
H+++E+RRR +INE+ + L+ELIPN K D AS L E I+Y++ LQ +VQ
Sbjct: 50 HSVTEQRRRSKINERFQILRELIPNSEQKRDTASFLLEVIDYVQYLQEKVQ 100
>AT5G57150.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:23152361-23153293 FORWARD
LENGTH=226
Length = 226
Score = 53.5 bits (127), Expect = 5e-07, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Query: 430 EDSEYHSEDAEEESV-GVKKASAGRGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELI 488
ED EY EE++ G +S+ G S A + +SER RR ++N+++ AL+ ++
Sbjct: 22 EDFEYDRSWPLEEAISGSYDSSSPDGAASS---PASKNIVSERNRRQKLNQRLFALRSVV 78
Query: 489 PNCNKVDKASMLDEAIEYLKTLQLQ 513
PN K+DKAS++ +AI Y++ LQ +
Sbjct: 79 PNITKMDKASIIKDAISYIEGLQYE 103
>AT5G57150.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:23152361-23154556 FORWARD
LENGTH=219
Length = 219
Score = 53.5 bits (127), Expect = 6e-07, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Query: 430 EDSEYHSEDAEEESV-GVKKASAGRGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELI 488
ED EY EE++ G +S+ G S A + +SER RR ++N+++ AL+ ++
Sbjct: 22 EDFEYDRSWPLEEAISGSYDSSSPDGAASS---PASKNIVSERNRRQKLNQRLFALRSVV 78
Query: 489 PNCNKVDKASMLDEAIEYLKTLQLQ 513
PN K+DKAS++ +AI Y++ LQ +
Sbjct: 79 PNITKMDKASIIKDAISYIEGLQYE 103
>AT1G32640.1 | Symbols: ATMYC2, RD22BP1, JAI1, JIN1, MYC2, ZBF1 |
Basic helix-loop-helix (bHLH) DNA-binding family protein
| chr1:11799042-11800913 REVERSE LENGTH=623
Length = 623
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 48/72 (66%), Gaps = 1/72 (1%)
Query: 444 VGVKKASAGRGTGSKRSRAAEVHNL-SERRRRDRINEKMRALQELIPNCNKVDKASMLDE 502
V V+K RG R ++++ +ER+RR+++N++ AL+ ++PN +K+DKAS+L +
Sbjct: 430 VAVEKRPKKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGD 489
Query: 503 AIEYLKTLQLQV 514
AI Y+ L+ +V
Sbjct: 490 AIAYINELKSKV 501
>AT4G16430.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:9267599-9269002 FORWARD
LENGTH=467
Length = 467
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Query: 434 YHSEDAEEESVGVKKASAGRGTGSKRSRAAEV---HNLSERRRRDRINEKMRALQELIPN 490
Y E ++E++ + R G K + E H +ER+RR+++N++ AL+ ++PN
Sbjct: 286 YGYEQGKDETLYLTDEQKPRKRGRKPANGREEALNHVEAERQRREKLNQRFYALRAVVPN 345
Query: 491 CNKVDKASMLDEAIEYLKTLQLQVQM 516
+K+DKAS+L +AI Y+ +Q ++++
Sbjct: 346 ISKMDKASLLADAITYITDMQKKIRV 371
>AT1G01260.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:109595-111367 FORWARD
LENGTH=590
Length = 590
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 58/98 (59%), Gaps = 5/98 (5%)
Query: 424 RKSRDTEDSEYHSEDAE----EESVGVKKASAGRGTGSKRSRAAEVHNLSERRRRDRINE 479
R S + D E E A+ +ES + GR + R+ A H +ER+RR+++N+
Sbjct: 389 RASENNSDGEGGGEWADAVGADESGNNRPRKRGRRPANGRAEALN-HVEAERQRREKLNQ 447
Query: 480 KMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMM 517
+ AL+ ++PN +K+DKAS+L +A+ Y+ L ++++M
Sbjct: 448 RFYALRSVVPNISKMDKASLLGDAVSYINELHAKLKVM 485
>AT1G01260.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:109595-111367 FORWARD
LENGTH=590
Length = 590
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 58/98 (59%), Gaps = 5/98 (5%)
Query: 424 RKSRDTEDSEYHSEDAE----EESVGVKKASAGRGTGSKRSRAAEVHNLSERRRRDRINE 479
R S + D E E A+ +ES + GR + R+ A H +ER+RR+++N+
Sbjct: 389 RASENNSDGEGGGEWADAVGADESGNNRPRKRGRRPANGRAEALN-HVEAERQRREKLNQ 447
Query: 480 KMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMM 517
+ AL+ ++PN +K+DKAS+L +A+ Y+ L ++++M
Sbjct: 448 RFYALRSVVPNISKMDKASLLGDAVSYINELHAKLKVM 485
>AT1G01260.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:109595-111367 FORWARD
LENGTH=590
Length = 590
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 58/98 (59%), Gaps = 5/98 (5%)
Query: 424 RKSRDTEDSEYHSEDAE----EESVGVKKASAGRGTGSKRSRAAEVHNLSERRRRDRINE 479
R S + D E E A+ +ES + GR + R+ A H +ER+RR+++N+
Sbjct: 389 RASENNSDGEGGGEWADAVGADESGNNRPRKRGRRPANGRAEALN-HVEAERQRREKLNQ 447
Query: 480 KMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMM 517
+ AL+ ++PN +K+DKAS+L +A+ Y+ L ++++M
Sbjct: 448 RFYALRSVVPNISKMDKASLLGDAVSYINELHAKLKVM 485
>AT2G16910.1 | Symbols: AMS | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr2:7331721-7334077
FORWARD LENGTH=571
Length = 571
Score = 53.1 bits (126), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 35/44 (79%)
Query: 468 LSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQ 511
++ERRRR ++N+++ AL+ L+P K+D+AS+L +AI Y+K LQ
Sbjct: 317 MAERRRRKKLNDRLYALRSLVPRITKLDRASILGDAINYVKELQ 360
>AT2G31220.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:13303014-13304661 FORWARD
LENGTH=458
Length = 458
Score = 52.8 bits (125), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 453 RGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQL 512
+G GS++SR + +ER RR N++ L+ LIPN K+D+AS++ EAI+Y+K L
Sbjct: 239 KGRGSRKSRTSP----TERERRVHFNDRFFDLKNLIPNPTKIDRASIVGEAIDYIKELLR 294
Query: 513 QVQMMSM 519
++ M
Sbjct: 295 TIEEFKM 301
>AT1G05805.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr1:1744843-1747427 FORWARD
LENGTH=362
Length = 362
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 457 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNK-VDKASMLDEAIEYLKTLQLQVQ 515
+KR A +++ER RR RI+ K++ LQ+L+PN +K + MLD A++++K LQ Q+Q
Sbjct: 285 AKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYSDMLDLAVQHIKGLQHQLQ 344
Query: 516 MM 517
+
Sbjct: 345 NL 346
>AT5G08130.4 | Symbols: BIM1 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr5:2606655-2609571
REVERSE LENGTH=529
Length = 529
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 466 HNLSERRRRDRINEKMRALQELIPNCN-KVDKASMLDEAIEYLKTLQ 511
H+ +E+RRR +IN++ + L++LIPN + K DKAS L E IEY++ LQ
Sbjct: 281 HSATEQRRRSKINDRFQMLRQLIPNSDQKRDKASFLLEVIEYIQFLQ 327
>AT5G08130.2 | Symbols: BIM1 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr5:2606655-2609571
REVERSE LENGTH=529
Length = 529
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 466 HNLSERRRRDRINEKMRALQELIPNCN-KVDKASMLDEAIEYLKTLQ 511
H+ +E+RRR +IN++ + L++LIPN + K DKAS L E IEY++ LQ
Sbjct: 281 HSATEQRRRSKINDRFQMLRQLIPNSDQKRDKASFLLEVIEYIQFLQ 327
>AT5G38860.1 | Symbols: BIM3 | BES1-interacting Myc-like protein 3 |
chr5:15559083-15560911 FORWARD LENGTH=298
Length = 298
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 9/93 (9%)
Query: 449 ASAGRGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELIP---NCNKVDKASMLDEAIE 505
++ R S RS+ H+ +E+RRR +INE+ ++L ++IP N K DKAS L E IE
Sbjct: 25 STGRRNRNSCRSK----HSETEQRRRSKINERFQSLMDIIPQNQNDQKRDKASFLLEVIE 80
Query: 506 YLKTLQLQVQMMSMGAG-FYMHPM-MLPGGMQH 536
Y+ LQ +V M +Y P ++P H
Sbjct: 81 YIHFLQEKVHMYEDSHQMWYQSPTKLIPWRNSH 113
>AT5G08130.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:2606655-2608652 REVERSE
LENGTH=408
Length = 408
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 466 HNLSERRRRDRINEKMRALQELIPNCN-KVDKASMLDEAIEYLKTLQ 511
H+ +E+RRR +IN++ + L++LIPN + K DKAS L E IEY++ LQ
Sbjct: 161 HSATEQRRRSKINDRFQMLRQLIPNSDQKRDKASFLLEVIEYIQFLQ 207
>AT5G08130.5 | Symbols: BIM1 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr5:2606655-2609571
REVERSE LENGTH=532
Length = 532
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 466 HNLSERRRRDRINEKMRALQELIPNCN-KVDKASMLDEAIEYLKTLQ 511
H+ +E+RRR +IN++ + L++LIPN + K DKAS L E IEY++ LQ
Sbjct: 285 HSATEQRRRSKINDRFQMLRQLIPNSDQKRDKASFLLEVIEYIQFLQ 331
>AT5G08130.6 | Symbols: BIM1 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr5:2606655-2609571
REVERSE LENGTH=529
Length = 529
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 466 HNLSERRRRDRINEKMRALQELIPNCN-KVDKASMLDEAIEYLKTLQ 511
H+ +E+RRR +IN++ + L++LIPN + K DKAS L E IEY++ LQ
Sbjct: 281 HSATEQRRRSKINDRFQMLRQLIPNSDQKRDKASFLLEVIEYIQFLQ 327
>AT5G57150.4 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:23152361-23154801 FORWARD
LENGTH=264
Length = 264
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Query: 430 EDSEYHSEDAEEESV-GVKKASAGRGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELI 488
ED EY EE++ G +S+ G S A + +SER RR ++N+++ AL+ ++
Sbjct: 22 EDFEYDRSWPLEEAISGSYDSSSPDGAASS---PASKNIVSERNRRQKLNQRLFALRSVV 78
Query: 489 PNCNKVDKASMLDEAIEYLKTLQLQ 513
PN K+DKAS++ +AI Y++ LQ +
Sbjct: 79 PNITKMDKASIIKDAISYIEGLQYE 103
>AT5G08130.1 | Symbols: BIM1 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr5:2606655-2608652
REVERSE LENGTH=409
Length = 409
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 466 HNLSERRRRDRINEKMRALQELIPNCN-KVDKASMLDEAIEYLKTLQ 511
H+ +E+RRR +IN++ + L++LIPN + K DKAS L E IEY++ LQ
Sbjct: 161 HSATEQRRRSKINDRFQMLRQLIPNSDQKRDKASFLLEVIEYIQFLQ 207
>AT3G26744.4 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein |
chr3:9832953-9834790 REVERSE LENGTH=494
Length = 494
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 72/135 (53%), Gaps = 6/135 (4%)
Query: 379 QVIAENGAKGPTAAERSAEPAVASSSVCSGN---GIDRCSNDPNQNLKRKSRDTEDSEYH 435
+V+A +GA+ PT ++ A +S S + G+ R S+D ++ + Y
Sbjct: 221 EVLASSGAQ-PTLFQKRAAMRQSSGSKMGNSESSGMRRFSDD--GDMDETGIEVSGLNYE 277
Query: 436 SEDAEEESVGVKKASAGRGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVD 495
S++ E + G G K+ + ++ERRRR ++N+++ L+ ++P +K+D
Sbjct: 278 SDEINESGKAAESVQIGGGGKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMD 337
Query: 496 KASMLDEAIEYLKTL 510
+AS+L +AI+YLK L
Sbjct: 338 RASILGDAIDYLKEL 352
>AT3G26744.2 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein |
chr3:9832953-9834790 REVERSE LENGTH=494
Length = 494
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 72/135 (53%), Gaps = 6/135 (4%)
Query: 379 QVIAENGAKGPTAAERSAEPAVASSSVCSGN---GIDRCSNDPNQNLKRKSRDTEDSEYH 435
+V+A +GA+ PT ++ A +S S + G+ R S+D ++ + Y
Sbjct: 221 EVLASSGAQ-PTLFQKRAAMRQSSGSKMGNSESSGMRRFSDD--GDMDETGIEVSGLNYE 277
Query: 436 SEDAEEESVGVKKASAGRGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVD 495
S++ E + G G K+ + ++ERRRR ++N+++ L+ ++P +K+D
Sbjct: 278 SDEINESGKAAESVQIGGGGKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMD 337
Query: 496 KASMLDEAIEYLKTL 510
+AS+L +AI+YLK L
Sbjct: 338 RASILGDAIDYLKEL 352
>AT3G26744.1 | Symbols: ICE1, ATICE1, SCRM | basic helix-loop-helix
(bHLH) DNA-binding superfamily protein |
chr3:9832953-9834790 REVERSE LENGTH=494
Length = 494
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 72/135 (53%), Gaps = 6/135 (4%)
Query: 379 QVIAENGAKGPTAAERSAEPAVASSSVCSGN---GIDRCSNDPNQNLKRKSRDTEDSEYH 435
+V+A +GA+ PT ++ A +S S + G+ R S+D ++ + Y
Sbjct: 221 EVLASSGAQ-PTLFQKRAAMRQSSGSKMGNSESSGMRRFSDD--GDMDETGIEVSGLNYE 277
Query: 436 SEDAEEESVGVKKASAGRGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVD 495
S++ E + G G K+ + ++ERRRR ++N+++ L+ ++P +K+D
Sbjct: 278 SDEINESGKAAESVQIGGGGKGKKKGMPAKNLMAERRRRKKLNDRLYMLRSVVPKISKMD 337
Query: 496 KASMLDEAIEYLKTL 510
+AS+L +AI+YLK L
Sbjct: 338 RASILGDAIDYLKEL 352
>AT2G22750.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:9672145-9673624 FORWARD
LENGTH=305
Length = 305
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 44/63 (69%), Gaps = 7/63 (11%)
Query: 456 GSKRSRA-------AEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLK 508
G+KR+++ A+ H L+ER+RR+++ ++ AL LIP K+DKAS+L +AI+++K
Sbjct: 110 GTKRAQSLTRSQSNAQDHILAERKRREKLTQRFVALSALIPGLKKMDKASVLGDAIKHIK 169
Query: 509 TLQ 511
LQ
Sbjct: 170 YLQ 172
>AT2G22750.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:9672145-9673624 FORWARD
LENGTH=304
Length = 304
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 44/63 (69%), Gaps = 7/63 (11%)
Query: 456 GSKRSRA-------AEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLK 508
G+KR+++ A+ H L+ER+RR+++ ++ AL LIP K+DKAS+L +AI+++K
Sbjct: 110 GTKRAQSLTRSQSNAQDHILAERKRREKLTQRFVALSALIPGLKKMDKASVLGDAIKHIK 169
Query: 509 TLQ 511
LQ
Sbjct: 170 YLQ 172
>AT5G01310.1 | Symbols: APTX | APRATAXIN-like | chr5:125304-128960
FORWARD LENGTH=912
Length = 912
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 13/79 (16%)
Query: 457 SKRSRAAEV-----HNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQ 511
+KRSR+ +++ R RR RI+++ + LQ ++P K+D SMLDEAI Y+K L+
Sbjct: 34 TKRSRSTSTLSTDPQSVAARDRRHRISDRFKILQSMVPGGAKMDTVSMLDEAISYVKFLK 93
Query: 512 LQVQMMSMGAGFYMHPMML 530
Q+ +Y M+L
Sbjct: 94 AQI--------WYHQNMLL 104
>AT5G46760.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-binding
family protein | chr5:18974231-18976009 FORWARD
LENGTH=592
Length = 592
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 39/50 (78%)
Query: 466 HNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQ 515
H +ER+RR+++N++ +L+ ++PN +K+DKAS+L +AI Y+ L+ ++Q
Sbjct: 416 HVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYINELKSKLQ 465
>AT3G62090.3 | Symbols: PIL2 | phytochrome interacting factor 3-like
2 | chr3:22989097-22990495 REVERSE LENGTH=324
Length = 324
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 36/76 (47%), Gaps = 22/76 (28%)
Query: 458 KRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQMM 517
KR R AE +N ER D SMLDEAI Y+ LQLQVQMM
Sbjct: 168 KRKRNAEAYNSPERD----------------------DNESMLDEAINYMTNLQLQVQMM 205
Query: 518 SMGAGFYMHPMMLPGG 533
+MG F MM+P G
Sbjct: 206 TMGNRFVTPSMMMPLG 221
>AT3G20640.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:7210654-7213199 REVERSE
LENGTH=454
Length = 454
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 8/107 (7%)
Query: 436 SEDAEEESVGVKKASAGRGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVD 495
SE + S VK+ +KR+++ +R++++ +++ ALQ+L+ K D
Sbjct: 309 SEIRDSSSNEVKRGGNDHQPAAKRAKSEAASPSPAFKRKEKMGDRIAALQQLVSPFGKTD 368
Query: 496 KASMLDEAIEYLKTLQLQVQMMSMGAGFYMHPMMLPGG-MQHMHTPH 541
AS+L EAIEY+K L QV +S +P M G +QH + H
Sbjct: 369 AASVLSEAIEYIKFLHQQVSALS-------NPYMKSGASLQHQQSDH 408
>AT4G29930.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14644108-14647449 FORWARD
LENGTH=254
Length = 254
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 56/82 (68%), Gaps = 5/82 (6%)
Query: 434 YHSEDAEEESVGVKKASAGRGT-----GSKRSRAAEVHNLSERRRRDRINEKMRALQELI 488
+ +++ E +S +++A +G G G+ S A+ + +SER RR ++N+++ AL+ ++
Sbjct: 18 FQNQELEFDSWPMEEAFSGSGESSSPDGAATSPASSKNVVSERNRRQKLNQRLFALRSVV 77
Query: 489 PNCNKVDKASMLDEAIEYLKTL 510
PN +K+DKAS++ ++I+Y++ L
Sbjct: 78 PNISKLDKASVIKDSIDYMQEL 99
>AT4G17880.1 | Symbols: | Basic helix-loop-helix (bHLH) DNA-binding
family protein | chr4:9933702-9935471 REVERSE LENGTH=589
Length = 589
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 39/50 (78%)
Query: 466 HNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQ 515
H +ER+RR+++N++ +L+ ++PN +K+DKAS+L +AI Y+ L+ ++Q
Sbjct: 417 HVEAERQRREKLNQRFYSLRAVVPNVSKMDKASLLGDAISYISELKSKLQ 466
>AT4G29930.4 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14644108-14645168 FORWARD
LENGTH=184
Length = 184
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 56/82 (68%), Gaps = 5/82 (6%)
Query: 434 YHSEDAEEESVGVKKASAGRGT-----GSKRSRAAEVHNLSERRRRDRINEKMRALQELI 488
+ +++ E +S +++A +G G G+ S A+ + +SER RR ++N+++ AL+ ++
Sbjct: 18 FQNQELEFDSWPMEEAFSGSGESSSPDGAATSPASSKNVVSERNRRQKLNQRLFALRSVV 77
Query: 489 PNCNKVDKASMLDEAIEYLKTL 510
PN +K+DKAS++ ++I+Y++ L
Sbjct: 78 PNISKLDKASVIKDSIDYMQEL 99
>AT4G29930.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:14644108-14645505 FORWARD
LENGTH=263
Length = 263
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 56/82 (68%), Gaps = 5/82 (6%)
Query: 434 YHSEDAEEESVGVKKASAGRGT-----GSKRSRAAEVHNLSERRRRDRINEKMRALQELI 488
+ +++ E +S +++A +G G G+ S A+ + +SER RR ++N+++ AL+ ++
Sbjct: 18 FQNQELEFDSWPMEEAFSGSGESSSPDGAATSPASSKNVVSERNRRQKLNQRLFALRSVV 77
Query: 489 PNCNKVDKASMLDEAIEYLKTL 510
PN +K+DKAS++ ++I+Y++ L
Sbjct: 78 PNISKLDKASVIKDSIDYMQEL 99
>AT1G12860.1 | Symbols: SCRM2, ICE2 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr1:4384758-4386392
FORWARD LENGTH=450
Length = 450
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 37/47 (78%)
Query: 468 LSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQV 514
++ERRRR ++N+++ L+ ++P +K+D+AS+L +AI+YLK L ++
Sbjct: 270 MAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAIDYLKELLQRI 316
>AT3G57800.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr3:21408034-21411321 REVERSE
LENGTH=426
Length = 426
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 92/223 (41%), Gaps = 76/223 (34%)
Query: 363 EPACKESAVKTDQTSKQVIAENGAKGPTAAERS----------AEPAVASSS--VCSGNG 410
E A + S + T+Q + + E PT++ S EPA SS + S +
Sbjct: 104 ERAARFSVIATEQQNGNISGET----PTSSVPSNSSANLDRVKTEPAETDSSQRLISDSA 159
Query: 411 IDR---CSNDPNQNLKRKSRDTEDSEYHSEDA---EEESVGVKKASAGRGTGSKRSRAAE 464
I+ C N N+N KRK + + ++ E E + A RG +A +
Sbjct: 160 IENQIPCPNQNNRNGKRKDFEKKGKSSTKKNKSSEENEKLPYVHVRARRG------QATD 213
Query: 465 VHNLSERRRRDRINEKMRALQELIPNCNK------------------------------- 493
H+L+ER RR++IN +M+ LQEL+P C+K
Sbjct: 214 SHSLAERARREKINARMKLLQELVPGCDKGTDFGGKIKIKVCFGVHLLMISGKKVAIFLW 273
Query: 494 -------VD----------KASMLDEAIEYLKTLQLQVQMMSM 519
+D A +LDE I ++++LQ QV+M+SM
Sbjct: 274 KVSCEDLIDCSFSPPRIQGTALVLDEIINHVQSLQRQVEMLSM 316
>AT2G42300.2 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr2:17621542-17623469 FORWARD
LENGTH=233
Length = 233
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 31/38 (81%)
Query: 457 SKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKV 494
++R +A + H+L+ER RR++IN +M+ LQEL+P C+KV
Sbjct: 187 ARRGQATDNHSLAERARREKINARMKLLQELVPGCDKV 224