Miyakogusa Predicted Gene

Lj5g3v1530090.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1530090.1 Non Chatacterized Hit- tr|I3T6A2|I3T6A2_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,97.27,0,UNCHARACTERIZED,Protein of unknown function DUF846,
eukaryotic; DUF846,Protein of unknown function D,CUFF.55420.1
         (183 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G09330.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   321   2e-88

>AT1G09330.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: integral to
           membrane; EXPRESSED IN: 24 plant structures; EXPRESSED
           DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
           Protein of unknown function DUF846, eukaryotic
           (InterPro:IPR008564); Has 518 Blast hits to 518 proteins
           in 206 species: Archae - 0; Bacteria - 0; Metazoa - 193;
           Fungi - 145; Plants - 73; Viruses - 0; Other Eukaryotes
           - 107 (source: NCBI BLink). | chr1:3013003-3014903
           REVERSE LENGTH=186
          Length = 186

 Score =  321 bits (823), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 156/186 (83%), Positives = 169/186 (90%), Gaps = 3/186 (1%)

Query: 1   MDPNQQV---VENYANPRTCFFHVLFKAASLAFYILSTLFIANFVIIFVVTVLLAALDFW 57
           MDPN Q+   VENYANPRTC FHVLFK A+LAFYILS LF  +FVIIFVVTVLLAALDFW
Sbjct: 1   MDPNNQIQAPVENYANPRTCLFHVLFKGAALAFYILSALFFNSFVIIFVVTVLLAALDFW 60

Query: 58  VVKNVSGRILVGLRWWNEINDLGESVWKFECLDQESLARMNKKDSWLFWWTLYLTAILWI 117
           VVKNVSGRILVGLRWWNEINDLGESVWKFE LDQESLARMNKKDSWLFWWTLYL A  W 
Sbjct: 61  VVKNVSGRILVGLRWWNEINDLGESVWKFESLDQESLARMNKKDSWLFWWTLYLAAAAWF 120

Query: 118 LLGIFSLIRLQADYLLVVGVCLTLSIANIVGFTKCKKDAKKQLQQFASQTIATRFSSTLQ 177
           +LG+FSLIR QADYLLVVGVCL+L++ANI+GFTKCKKDAKKQ QQFASQTIA+RF ST+Q
Sbjct: 121 ILGVFSLIRFQADYLLVVGVCLSLNVANIIGFTKCKKDAKKQFQQFASQTIASRFQSTVQ 180

Query: 178 SAFSVV 183
           SAF++V
Sbjct: 181 SAFTLV 186