Miyakogusa Predicted Gene

Lj5g3v1529890.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1529890.1 CUFF.55613.1
         (178 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G09250.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...   119   1e-27
AT3G05800.1 | Symbols: AIF1 | AtBS1(activation-tagged BRI1 suppr...   108   2e-24
AT3G17100.2 | Symbols:  | sequence-specific DNA binding transcri...    99   2e-21
AT3G17100.1 | Symbols:  | sequence-specific DNA binding transcri...    99   2e-21
AT3G06590.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    95   2e-20
AT3G06590.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    95   2e-20

>AT1G09250.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr1:2989509-2990132 FORWARD
           LENGTH=207
          Length = 207

 Score =  119 bits (297), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 77/191 (40%), Positives = 107/191 (56%), Gaps = 35/191 (18%)

Query: 1   MDSLQPNTITDSETSPDSNHKKRRKITHPQ---------NPLNLMPWRSNADQQIYSLRL 51
           ++SL P+     E + +S+ +K+ +I+            N  +L  W++N  QQIY+ +L
Sbjct: 2   VESLFPSI----ENTGESSRRKKPRISETAEAEIEARRVNEESLKRWKTNRVQQIYACKL 57

Query: 52  ANALRRIPR----------------PAAQIRDTADRVLAATAKGRTRWSXX--XXXXXXX 93
             ALRR+ +                 A +IRDTADRVLAA+A+G TRWS           
Sbjct: 58  VEALRRVRQRSSTTSNNETDKLVSGAAREIRDTADRVLAASARGTTRWSRAILASRVRAK 117

Query: 94  XXXXXXXXXXSGLRRAAIG----RRKRLPAVQKKARVLGRLVPGCRKVSFPNLLEEATDY 149
                     +G  ++  G     R +LPAV++K ++LGRLVPGCRKVS PNLL+EATDY
Sbjct: 118 LKKHRKAKKSTGNCKSRKGLTETNRIKLPAVERKLKILGRLVPGCRKVSVPNLLDEATDY 177

Query: 150 ISALEMQVRAM 160
           I+ALEMQVRAM
Sbjct: 178 IAALEMQVRAM 188


>AT3G05800.1 | Symbols: AIF1 | AtBS1(activation-tagged BRI1
           suppressor 1)-interacting factor 1 |
           chr3:1727476-1728111 FORWARD LENGTH=211
          Length = 211

 Score =  108 bits (270), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/164 (41%), Positives = 98/164 (59%), Gaps = 10/164 (6%)

Query: 22  KRRKITHPQNPLNLMP--WRSNADQQIYSLRLANALRRIPRPAAQIRDTADRVLAATAKG 79
           +R +++  + P+  +   WR+   Q++YSL+L +AL+R  R +A +RDTAD+VLA TA+G
Sbjct: 45  RRSRVSSEEAPVRHLSRRWRATTAQKVYSLKLYDALQR-SRRSATVRDTADKVLATTARG 103

Query: 80  RTRWSXXXXXXXXXXXXXXXXXXXSGLRRAA-------IGRRKRLPAVQKKARVLGRLVP 132
            TRWS                        AA        GRR++L AV  + RVLG LVP
Sbjct: 104 ATRWSRAILVSRFGTSLRRRRNTKPASALAAAIRGSGGSGRRRKLSAVGNRVRVLGGLVP 163

Query: 133 GCRKVSFPNLLEEATDYISALEMQVRAMAALAELLSGGAPAAHV 176
           GCR+ + P LL+E  DYI+ALEMQVRAM AL+++LS   P+ ++
Sbjct: 164 GCRRTALPELLDETADYIAALEMQVRAMTALSKILSELQPSTNL 207


>AT3G17100.2 | Symbols:  | sequence-specific DNA binding
           transcription factors | chr3:5831552-5832244 FORWARD
           LENGTH=230
          Length = 230

 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/162 (38%), Positives = 81/162 (50%), Gaps = 31/162 (19%)

Query: 33  LNLMPWRSNADQQIYSLRLANALRRI--------------PRPAAQIRDTADRVLAATAK 78
           ++L  WRS   QQIYS +L +ALR +              PR    +R+ ADR LA  A+
Sbjct: 45  ISLEKWRSEKQQQIYSTKLVHALRELRISQQPSSSSSSSIPRGGRAVREVADRALAVAAR 104

Query: 79  GRTRWSXXXXXXXXXXXXXXXX---------------XXXSGLRRAAIGR--RKRLPAVQ 121
           G+T WS                                  S  +RA + R   K LPAVQ
Sbjct: 105 GKTLWSRAILSKAVKLKFRKHKRQRISNPTTTTLTTGSIRSKKQRATVLRLKAKGLPAVQ 164

Query: 122 KKARVLGRLVPGCRKVSFPNLLEEATDYISALEMQVRAMAAL 163
           +K +VL RLVPGCRK S P +LEE TDYI+A+EMQ+R M A+
Sbjct: 165 RKVKVLSRLVPGCRKQSLPVVLEETTDYIAAMEMQIRTMTAI 206


>AT3G17100.1 | Symbols:  | sequence-specific DNA binding
           transcription factors | chr3:5831552-5832244 FORWARD
           LENGTH=230
          Length = 230

 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/162 (38%), Positives = 81/162 (50%), Gaps = 31/162 (19%)

Query: 33  LNLMPWRSNADQQIYSLRLANALRRI--------------PRPAAQIRDTADRVLAATAK 78
           ++L  WRS   QQIYS +L +ALR +              PR    +R+ ADR LA  A+
Sbjct: 45  ISLEKWRSEKQQQIYSTKLVHALRELRISQQPSSSSSSSIPRGGRAVREVADRALAVAAR 104

Query: 79  GRTRWSXXXXXXXXXXXXXXXX---------------XXXSGLRRAAIGR--RKRLPAVQ 121
           G+T WS                                  S  +RA + R   K LPAVQ
Sbjct: 105 GKTLWSRAILSKAVKLKFRKHKRQRISNPTTTTLTTGSIRSKKQRATVLRLKAKGLPAVQ 164

Query: 122 KKARVLGRLVPGCRKVSFPNLLEEATDYISALEMQVRAMAAL 163
           +K +VL RLVPGCRK S P +LEE TDYI+A+EMQ+R M A+
Sbjct: 165 RKVKVLSRLVPGCRKQSLPVVLEETTDYIAAMEMQIRTMTAI 206


>AT3G06590.2 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr3:2054647-2055312 REVERSE
           LENGTH=221
          Length = 221

 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/171 (37%), Positives = 83/171 (48%), Gaps = 36/171 (21%)

Query: 38  WRSNADQQIYSLRLANALRRI--------------PRPAAQIRDTADRVLAATAKGRTRW 83
           WRS   Q+IYS +L  AL+++               +    +R+ ADR LA +A+GRT W
Sbjct: 48  WRSEKQQRIYSAKLFQALQQVRLNSSASTSSSPTAQKRGKAVREAADRALAVSARGRTLW 107

Query: 84  SXXXXXXXXXXXXXXXXXXXSGLRRAAIG--------------------RRKRLPAVQKK 123
           S                   + +   A+                      +K +P V +K
Sbjct: 108 SRAILANRIKLKFRKQRRPRATMAIPAMTTVVSSSSNRSRKRRVSVLRLNKKSIPDVNRK 167

Query: 124 ARVLGRLVPGCRKVSFPNLLEEATDYISALEMQVRAMAALAELLS--GGAP 172
            RVLGRLVPGC K S P +LEEATDYI ALEMQVRAM +L +LLS  G AP
Sbjct: 168 VRVLGRLVPGCGKQSVPVILEEATDYIQALEMQVRAMNSLVQLLSSYGSAP 218


>AT3G06590.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr3:2054647-2055312 REVERSE
           LENGTH=221
          Length = 221

 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/171 (37%), Positives = 83/171 (48%), Gaps = 36/171 (21%)

Query: 38  WRSNADQQIYSLRLANALRRI--------------PRPAAQIRDTADRVLAATAKGRTRW 83
           WRS   Q+IYS +L  AL+++               +    +R+ ADR LA +A+GRT W
Sbjct: 48  WRSEKQQRIYSAKLFQALQQVRLNSSASTSSSPTAQKRGKAVREAADRALAVSARGRTLW 107

Query: 84  SXXXXXXXXXXXXXXXXXXXSGLRRAAIG--------------------RRKRLPAVQKK 123
           S                   + +   A+                      +K +P V +K
Sbjct: 108 SRAILANRIKLKFRKQRRPRATMAIPAMTTVVSSSSNRSRKRRVSVLRLNKKSIPDVNRK 167

Query: 124 ARVLGRLVPGCRKVSFPNLLEEATDYISALEMQVRAMAALAELLS--GGAP 172
            RVLGRLVPGC K S P +LEEATDYI ALEMQVRAM +L +LLS  G AP
Sbjct: 168 VRVLGRLVPGCGKQSVPVILEEATDYIQALEMQVRAMNSLVQLLSSYGSAP 218