Miyakogusa Predicted Gene

Lj5g3v1499410.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1499410.2 Non Chatacterized Hit- tr|F2AP00|F2AP00_RHOBT
Putative uncharacterized protein OS=Rhodopirellula
bal,32.57,4e-19,TPR-like,NULL; TPR_2,Tetratricopeptide TPR2;
TPR_REGION,Tetratricopeptide repeat-containing domain; ,CUFF.55359.2
         (177 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05625.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   307   3e-84

>AT3G05625.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr3:1632408-1633912 FORWARD
           LENGTH=257
          Length = 257

 Score =  307 bits (786), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 139/177 (78%), Positives = 162/177 (91%)

Query: 1   MSLFRQGDVSGSVVEFDKAIQLDPRQKAYLWQRGLSLYYLNRFEEGAEQFRLDVAQNPND 60
           M LFRQGDV+GSV EFD+AI LDPRQKAYLWQRGLSLYY++RFEEGAEQFR+DVAQNPND
Sbjct: 77  MQLFRQGDVAGSVAEFDRAIILDPRQKAYLWQRGLSLYYVDRFEEGAEQFRIDVAQNPND 136

Query: 61  TEESIWCFLCEAQLYGVDEARKRYLEVGRDSRPVMREAYNMFRDGGDPEKLVAAFSNGRE 120
           TEESIWCF+CEA+L+GVD AR ++LEVGRDSRPVMREAYN+F++GGDPEKLV  FS+G+ 
Sbjct: 137 TEESIWCFICEARLHGVDVARTQFLEVGRDSRPVMREAYNLFKNGGDPEKLVNDFSSGQA 196

Query: 121 GEYFYASLYAGLYYESQNETDAAKVHMVAACQSSYGQRSDDYMASLSKVHCLCRNWT 177
            EYFYASLYAGLYYE++ +++ AK H+ AAC S YGQRSDDYMASL+KVHCLCRNW+
Sbjct: 197 SEYFYASLYAGLYYEAEGKSENAKFHLTAACGSPYGQRSDDYMASLAKVHCLCRNWS 253