Miyakogusa Predicted Gene
- Lj5g3v1498040.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1498040.2 tr|G7I8Q5|G7I8Q5_MEDTR Pre-mRNA-splicing factor
SF2 OS=Medicago truncatula GN=MTR_1g083400 PE=4 SV=1,83.88,0,no
description,Nucleotide-binding, alpha-beta plait; SPLICING FACTOR,
ARGININE/SERINE-RICH,NULL; RNA,CUFF.55334.2
(249 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G09140.1 | Symbols: ATSRP30, SR30, At-SR30 | SERINE-ARGININE ... 258 3e-69
AT1G09140.2 | Symbols: ATSRP30, SR30, At-SR30 | SERINE-ARGININE ... 258 3e-69
AT1G02840.3 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA-... 254 3e-68
AT1G02840.1 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA-... 254 3e-68
AT1G02840.2 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 | RNA-... 253 1e-67
AT4G02430.2 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RN... 241 5e-64
AT3G49430.3 | Symbols: SRp34a, SR34a, At-SR34a | SER/ARG-rich pr... 223 7e-59
AT3G49430.1 | Symbols: SRp34a, SR34a, At-SR34a | SER/ARG-rich pr... 223 7e-59
AT3G49430.2 | Symbols: SRp34a, SR34a, At-SR34a | SER/ARG-rich pr... 223 1e-58
AT4G02430.1 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RN... 219 2e-57
AT3G53500.2 | Symbols: RSZ32, RS2Z32, At-RS2Z | RNA-binding (RRM... 67 1e-11
AT2G37340.1 | Symbols: RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 | argin... 64 7e-11
AT2G24590.1 | Symbols: RSZ22a, At-RSZ22a | RNA recognition motif... 58 5e-09
AT4G31580.2 | Symbols: SRZ-22, SRZ22, RSZP22, RSZ22, At-RSZ22 | ... 56 2e-08
AT4G31580.1 | Symbols: SRZ-22, SRZ22, RSZP22, RSZ22, At-RSZ22 | ... 56 2e-08
AT2G46610.1 | Symbols: RS31a, At-RS31a | RNA-binding (RRM/RBD/RN... 55 4e-08
AT1G23860.3 | Symbols: SRZ-21, SRZ21, RSZ21, At-RSZ21 | RS-conta... 54 9e-08
AT1G23860.4 | Symbols: RSZP21, RSZ21, At-RSZ21 | RS-containing z... 54 1e-07
AT1G23860.2 | Symbols: SRZ-21, SRZ21, RSZ21, At-RSZ21 | RS-conta... 54 1e-07
AT1G23860.1 | Symbols: SRZ-21, SRZ21, RSZP21, RSZ21, At-RSZ21 | ... 54 1e-07
AT3G61860.1 | Symbols: ATRSP31, RSP31, At-RS31, RS31 | RNA-bindi... 52 3e-07
AT4G25500.4 | Symbols: RSP35, RS40, At-RS40 | arginine/serine-ri... 52 4e-07
AT4G25500.1 | Symbols: ATRSP35, ATRSP40, AT-SRP40, RSP35, RS40, ... 52 4e-07
AT5G52040.2 | Symbols: ATRSP41, RS41, At-RS41 | RNA-binding (RRM... 51 8e-07
AT5G52040.1 | Symbols: ATRSP41, RS41, At-RS41 | RNA-binding (RRM... 51 8e-07
AT3G53500.1 | Symbols: RSZ32, RS2Z32, At-RS2Z | RNA-binding (RRM... 49 4e-06
AT4G12640.1 | Symbols: | RNA recognition motif (RRM)-containing... 48 5e-06
AT5G12190.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) famil... 48 7e-06
AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |... 47 1e-05
>AT1G09140.1 | Symbols: ATSRP30, SR30, At-SR30 | SERINE-ARGININE
PROTEIN 30 | chr1:2942887-2945818 REVERSE LENGTH=268
Length = 268
Score = 258 bits (659), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 132/186 (70%), Positives = 145/186 (77%), Gaps = 2/186 (1%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MSSR +RTIYVGNLPGDIR EVED+FYK+GPIVDIDLKIPPRPPGYAFV+FED RDA+D
Sbjct: 1 MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60
Query: 61 AIYYRDGYDFDGFRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVTGLPP 120
AIY RDGYDFDG RLRVE+AH VLVTGLPP
Sbjct: 61 AIYGRDGYDFDGCRLRVEIAH--GGRRFSPSVDRYSSSYSASRAPSRRSDYRVLVTGLPP 118
Query: 121 SASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSRA 180
SASWQDLKDHMRKAGDVCFS+VF +R GM+G+VDY+NYDDMKYA+RKLD +EFRNAFS A
Sbjct: 119 SASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDATEFRNAFSSA 178
Query: 181 YIRVRE 186
YIRVRE
Sbjct: 179 YIRVRE 184
>AT1G09140.2 | Symbols: ATSRP30, SR30, At-SR30 | SERINE-ARGININE
PROTEIN 30 | chr1:2943528-2945818 REVERSE LENGTH=256
Length = 256
Score = 258 bits (659), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 132/186 (70%), Positives = 145/186 (77%), Gaps = 2/186 (1%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MSSR +RTIYVGNLPGDIR EVED+FYK+GPIVDIDLKIPPRPPGYAFV+FED RDA+D
Sbjct: 1 MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60
Query: 61 AIYYRDGYDFDGFRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLVTGLPP 120
AIY RDGYDFDG RLRVE+AH VLVTGLPP
Sbjct: 61 AIYGRDGYDFDGCRLRVEIAH--GGRRFSPSVDRYSSSYSASRAPSRRSDYRVLVTGLPP 118
Query: 121 SASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSEFRNAFSRA 180
SASWQDLKDHMRKAGDVCFS+VF +R GM+G+VDY+NYDDMKYA+RKLD +EFRNAFS A
Sbjct: 119 SASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDATEFRNAFSSA 178
Query: 181 YIRVRE 186
YIRVRE
Sbjct: 179 YIRVRE 184
>AT1G02840.3 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 |
RNA-binding (RRM/RBD/RNP motifs) family protein |
chr1:626918-629583 FORWARD LENGTH=303
Length = 303
Score = 254 bits (649), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 127/194 (65%), Positives = 142/194 (73%), Gaps = 8/194 (4%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MSSRSSRT+YVGNLPGDIR REVED+F K+GP+V IDLK+PPRPPGYAFV+F+DARDAED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 61 AIYYRDGYDFDGFRLRVELAHXXXXXX--------XXXXXXXXXXXXXXXXXXXXXXXXX 112
AI+ RDGYDFDG RLRVELAH
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFR 120
Query: 113 VLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSE 172
VLVTGLP SASWQDLKDHMRK GDVCFSQV+R+ G TG+VDYT Y+DMKYAL+KLDD+E
Sbjct: 121 VLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTE 180
Query: 173 FRNAFSRAYIRVRE 186
FRNAFS Y+RVRE
Sbjct: 181 FRNAFSNGYVRVRE 194
>AT1G02840.1 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 |
RNA-binding (RRM/RBD/RNP motifs) family protein |
chr1:626918-629583 FORWARD LENGTH=303
Length = 303
Score = 254 bits (649), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 127/194 (65%), Positives = 142/194 (73%), Gaps = 8/194 (4%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MSSRSSRT+YVGNLPGDIR REVED+F K+GP+V IDLK+PPRPPGYAFV+F+DARDAED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 61 AIYYRDGYDFDGFRLRVELAHXXXXXX--------XXXXXXXXXXXXXXXXXXXXXXXXX 112
AI+ RDGYDFDG RLRVELAH
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFR 120
Query: 113 VLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSE 172
VLVTGLP SASWQDLKDHMRK GDVCFSQV+R+ G TG+VDYT Y+DMKYAL+KLDD+E
Sbjct: 121 VLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTE 180
Query: 173 FRNAFSRAYIRVRE 186
FRNAFS Y+RVRE
Sbjct: 181 FRNAFSNGYVRVRE 194
>AT1G02840.2 | Symbols: SR1, ATSRP34, SRP34, SR34, At-SR34 |
RNA-binding (RRM/RBD/RNP motifs) family protein |
chr1:626918-628995 FORWARD LENGTH=285
Length = 285
Score = 253 bits (645), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 127/194 (65%), Positives = 142/194 (73%), Gaps = 8/194 (4%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MSSRSSRT+YVGNLPGDIR REVED+F K+GP+V IDLK+PPRPPGYAFV+F+DARDAED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 61 AIYYRDGYDFDGFRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXX--------XXXXXXX 112
AI+ RDGYDFDG RLRVELAH
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSRGPSRRSEFR 120
Query: 113 VLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDSE 172
VLVTGLP SASWQDLKDHMRK GDVCFSQV+R+ G TG+VDYT Y+DMKYAL+KLDD+E
Sbjct: 121 VLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDTE 180
Query: 173 FRNAFSRAYIRVRE 186
FRNAFS Y+RVRE
Sbjct: 181 FRNAFSNGYVRVRE 194
>AT4G02430.2 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr4:1069186-1071313 FORWARD
LENGTH=278
Length = 278
Score = 241 bits (614), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 126/195 (64%), Positives = 139/195 (71%), Gaps = 12/195 (6%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MSSRSSRTIYVGNLPGDIR REVED+F K+GP+V IDLKIPPRPPGYAFV+FEDARDA+D
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60
Query: 61 AIYYRDGYDFDGFRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXX---------XXXXXX 111
AIY RDGYDFDG LRVELAH
Sbjct: 61 AIYGRDGYDFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRSEY 120
Query: 112 XVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLDDS 171
V+V+GLP SASWQDLKDHMRK G+VCFSQVFR+ G TGIVDYT+Y+DMKYA LDD+
Sbjct: 121 RVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYA---LDDT 177
Query: 172 EFRNAFSRAYIRVRE 186
EFRNAFS Y+RVRE
Sbjct: 178 EFRNAFSHEYVRVRE 192
>AT3G49430.3 | Symbols: SRp34a, SR34a, At-SR34a | SER/ARG-rich
protein 34A | chr3:18332668-18334829 FORWARD LENGTH=300
Length = 300
Score = 223 bits (569), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 114/197 (57%), Positives = 134/197 (68%), Gaps = 11/197 (5%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MS R SR+IYVGNLPGDIR E+EDIFYK+G IVDI+LK+PPRPP Y FV+FE +RDAED
Sbjct: 1 MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60
Query: 61 AIYYRDGYDFDGFRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXX-----------XXXX 109
AI RDGY+ DG RLRVELAH
Sbjct: 61 AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120
Query: 110 XXXVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLD 169
V+V GLP SASWQDLKDHMRKAGDVCF++V R+ G G+VDYTNYDDMKYA+RKLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180
Query: 170 DSEFRNAFSRAYIRVRE 186
D+EFRN ++R +IRV++
Sbjct: 181 DTEFRNPWARGFIRVKK 197
>AT3G49430.1 | Symbols: SRp34a, SR34a, At-SR34a | SER/ARG-rich
protein 34A | chr3:18332668-18334829 FORWARD LENGTH=300
Length = 300
Score = 223 bits (569), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 114/197 (57%), Positives = 134/197 (68%), Gaps = 11/197 (5%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MS R SR+IYVGNLPGDIR E+EDIFYK+G IVDI+LK+PPRPP Y FV+FE +RDAED
Sbjct: 1 MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60
Query: 61 AIYYRDGYDFDGFRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXX-----------XXXX 109
AI RDGY+ DG RLRVELAH
Sbjct: 61 AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120
Query: 110 XXXVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLD 169
V+V GLP SASWQDLKDHMRKAGDVCF++V R+ G G+VDYTNYDDMKYA+RKLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180
Query: 170 DSEFRNAFSRAYIRVRE 186
D+EFRN ++R +IRV++
Sbjct: 181 DTEFRNPWARGFIRVKK 197
>AT3G49430.2 | Symbols: SRp34a, SR34a, At-SR34a | SER/ARG-rich
protein 34A | chr3:18332668-18334617 FORWARD LENGTH=297
Length = 297
Score = 223 bits (568), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 114/197 (57%), Positives = 134/197 (68%), Gaps = 11/197 (5%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MS R SR+IYVGNLPGDIR E+EDIFYK+G IVDI+LK+PPRPP Y FV+FE +RDAED
Sbjct: 1 MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60
Query: 61 AIYYRDGYDFDGFRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXX-----------XXXX 109
AI RDGY+ DG RLRVELAH
Sbjct: 61 AIKGRDGYNLDGCRLRVELAHGGRGQSSSDRRGGYGGGGSGYGGGGGGGGSARFGVSRHS 120
Query: 110 XXXVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRKLD 169
V+V GLP SASWQDLKDHMRKAGDVCF++V R+ G G+VDYTNYDDMKYA+RKLD
Sbjct: 121 EFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRKLD 180
Query: 170 DSEFRNAFSRAYIRVRE 186
D+EFRN ++R +IRV++
Sbjct: 181 DTEFRNPWARGFIRVKK 197
>AT4G02430.1 | Symbols: SR34b, At-SR34b | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr4:1069186-1070543 FORWARD
LENGTH=178
Length = 178
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 112/176 (63%), Positives = 125/176 (71%), Gaps = 9/176 (5%)
Query: 1 MSSRSSRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAED 60
MSSRSSRTIYVGNLPGDIR REVED+F K+GP+V IDLKIPPRPPGYAFV+FEDARDA+D
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60
Query: 61 AIYYRDGYDFDGFRLRVELAHXXXXXXXXXXXXXXXXXXXXXXXX---------XXXXXX 111
AIY RDGYDFDG LRVELAH
Sbjct: 61 AIYGRDGYDFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRSEY 120
Query: 112 XVLVTGLPPSASWQDLKDHMRKAGDVCFSQVFRERGGMTGIVDYTNYDDMKYALRK 167
V+V+GLP SASWQDLKDHMRK G+VCFSQVFR+ G TGIVDYT+Y+DMKYA++K
Sbjct: 121 RVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYAIKK 176
>AT3G53500.2 | Symbols: RSZ32, RS2Z32, At-RS2Z | RNA-binding
(RRM/RBD/RNP motifs) family protein with retrovirus
zinc finger-like domain | chr3:19834557-19836507
REVERSE LENGTH=284
Length = 284
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 47/73 (64%), Gaps = 5/73 (6%)
Query: 9 IYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAEDAIYYRDGY 68
+YVG L R R++E +F ++G + D+D+K YAFV+F D RDA+DA YY DG
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKR-----DYAFVEFSDPRDADDARYYLDGR 67
Query: 69 DFDGFRLRVELAH 81
DFDG R+ VE +
Sbjct: 68 DFDGSRITVEASR 80
>AT2G37340.1 | Symbols: RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 |
arginine/serine-rich zinc knuckle-containing protein 33
| chr2:15670372-15672331 REVERSE LENGTH=290
Length = 290
Score = 64.3 bits (155), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 47/73 (64%), Gaps = 5/73 (6%)
Query: 9 IYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAEDAIYYRDGY 68
+YVG L R R++E +F ++G + D+D+K YAFV+F D RDA+DA +Y DG
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKR-----DYAFVEFGDPRDADDARHYLDGR 67
Query: 69 DFDGFRLRVELAH 81
DFDG R+ VE +
Sbjct: 68 DFDGSRITVEFSR 80
>AT2G24590.1 | Symbols: RSZ22a, At-RSZ22a | RNA recognition motif
and CCHC-type zinc finger domains containing protein |
chr2:10449837-10450860 FORWARD LENGTH=196
Length = 196
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 9 IYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAEDAIYYRDGY 68
+YVGNL + RE+ED F FG I + + RPPGYAF+ FED+RDA DAI DG
Sbjct: 4 VYVGNLDPRVTERELEDEFRSFGVIRSV--WVARRPPGYAFLDFEDSRDARDAIREVDGK 61
Query: 69 DFDGFRLRVELAH 81
+ RVE +H
Sbjct: 62 NG----WRVEQSH 70
>AT4G31580.2 | Symbols: SRZ-22, SRZ22, RSZP22, RSZ22, At-RSZ22 |
serine/arginine-rich 22 | chr4:15306983-15308064
FORWARD LENGTH=200
Length = 200
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 9 IYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAEDAIYYRDGY 68
+YVGNL + RE+ED F FG + + + RPPGYAF+ FED RDA DAI DG
Sbjct: 4 VYVGNLDPRVTERELEDEFRAFGVVRSV--WVARRPPGYAFLDFEDPRDARDAIRALDGK 61
Query: 69 DFDGFRLRVELAH 81
+ RVE +H
Sbjct: 62 NG----WRVEQSH 70
>AT4G31580.1 | Symbols: SRZ-22, SRZ22, RSZP22, RSZ22, At-RSZ22 |
serine/arginine-rich 22 | chr4:15306983-15308064
FORWARD LENGTH=200
Length = 200
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 9 IYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAEDAIYYRDGY 68
+YVGNL + RE+ED F FG + + + RPPGYAF+ FED RDA DAI DG
Sbjct: 4 VYVGNLDPRVTERELEDEFRAFGVVRSV--WVARRPPGYAFLDFEDPRDARDAIRALDGK 61
Query: 69 DFDGFRLRVELAH 81
+ RVE +H
Sbjct: 62 NG----WRVEQSH 70
>AT2G46610.1 | Symbols: RS31a, At-RS31a | RNA-binding (RRM/RBD/RNP
motifs) family protein | chr2:19136769-19138492 REVERSE
LENGTH=250
Length = 250
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Query: 7 RTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAEDAIYYRD 66
R +YVGN D R ++E +F KFG + +D+K GYAFV FED RDAEDAI D
Sbjct: 2 RHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKS-----GYAFVYFEDERDAEDAIRRTD 56
Query: 67 GYDF 70
F
Sbjct: 57 NTTF 60
>AT1G23860.3 | Symbols: SRZ-21, SRZ21, RSZ21, At-RSZ21 |
RS-containing zinc finger protein 21 |
chr1:8428091-8429164 REVERSE LENGTH=164
Length = 164
Score = 53.9 bits (128), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 45/73 (61%), Gaps = 6/73 (8%)
Query: 9 IYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAEDAIYYRDGY 68
+YVGNL + RE+ED F FG + ++ + RPPGYAF++F+D RDA DAI D
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNV--WVARRPPGYAFLEFDDERDALDAISALDRK 61
Query: 69 DFDGFRLRVELAH 81
+ RVEL+H
Sbjct: 62 NG----WRVELSH 70
>AT1G23860.4 | Symbols: RSZP21, RSZ21, At-RSZ21 | RS-containing
zinc finger protein 21 | chr1:8428091-8429164 REVERSE
LENGTH=183
Length = 183
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 45/73 (61%), Gaps = 6/73 (8%)
Query: 9 IYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAEDAIYYRDGY 68
+YVGNL + RE+ED F FG + ++ + RPPGYAF++F+D RDA DAI D
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNV--WVARRPPGYAFLEFDDERDALDAISALDRK 61
Query: 69 DFDGFRLRVELAH 81
+ RVEL+H
Sbjct: 62 NG----WRVELSH 70
>AT1G23860.2 | Symbols: SRZ-21, SRZ21, RSZ21, At-RSZ21 |
RS-containing zinc finger protein 21 |
chr1:8428091-8429164 REVERSE LENGTH=187
Length = 187
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 45/73 (61%), Gaps = 6/73 (8%)
Query: 9 IYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAEDAIYYRDGY 68
+YVGNL + RE+ED F FG + ++ + RPPGYAF++F+D RDA DAI D
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNV--WVARRPPGYAFLEFDDERDALDAISALDRK 61
Query: 69 DFDGFRLRVELAH 81
+ RVEL+H
Sbjct: 62 NG----WRVELSH 70
>AT1G23860.1 | Symbols: SRZ-21, SRZ21, RSZP21, RSZ21, At-RSZ21 |
RS-containing zinc finger protein 21 |
chr1:8428091-8429164 REVERSE LENGTH=187
Length = 187
Score = 53.5 bits (127), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 45/73 (61%), Gaps = 6/73 (8%)
Query: 9 IYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAEDAIYYRDGY 68
+YVGNL + RE+ED F FG + ++ + RPPGYAF++F+D RDA DAI D
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNV--WVARRPPGYAFLEFDDERDALDAISALDRK 61
Query: 69 DFDGFRLRVELAH 81
+ RVEL+H
Sbjct: 62 NG----WRVELSH 70
>AT3G61860.1 | Symbols: ATRSP31, RSP31, At-RS31, RS31 |
RNA-binding (RRM/RBD/RNP motifs) family protein |
chr3:22900311-22902159 REVERSE LENGTH=264
Length = 264
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 7/77 (9%)
Query: 7 RTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAEDAIYYRD 66
R ++VGN + R ++E +F K+G + +D+K GYAFV FED RDAEDAI D
Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKS-----GYAFVYFEDERDAEDAIRKLD 56
Query: 67 GYDF--DGFRLRVELAH 81
+ F + RL VE A
Sbjct: 57 NFPFGYEKRRLSVEWAK 73
>AT4G25500.4 | Symbols: RSP35, RS40, At-RS40 |
arginine/serine-rich splicing factor 35 |
chr4:13025168-13027243 FORWARD LENGTH=350
Length = 350
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 7/74 (9%)
Query: 7 RTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAEDAIYYRD 66
+ ++ GN D R ++E +F K+G + +D+K G+AFV ED RDAEDAI D
Sbjct: 2 KPVFCGNFEYDAREGDLERLFRKYGKVERVDMKA-----GFAFVYMEDERDAEDAIRALD 56
Query: 67 GYDF--DGFRLRVE 78
++F G RLRVE
Sbjct: 57 RFEFGRKGRRLRVE 70
>AT4G25500.1 | Symbols: ATRSP35, ATRSP40, AT-SRP40, RSP35, RS40,
At-RS40 | arginine/serine-rich splicing factor 35 |
chr4:13025168-13027243 FORWARD LENGTH=350
Length = 350
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 44/74 (59%), Gaps = 7/74 (9%)
Query: 7 RTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAEDAIYYRD 66
+ ++ GN D R ++E +F K+G + +D+K G+AFV ED RDAEDAI D
Sbjct: 2 KPVFCGNFEYDAREGDLERLFRKYGKVERVDMKA-----GFAFVYMEDERDAEDAIRALD 56
Query: 67 GYDF--DGFRLRVE 78
++F G RLRVE
Sbjct: 57 RFEFGRKGRRLRVE 70
>AT5G52040.2 | Symbols: ATRSP41, RS41, At-RS41 | RNA-binding
(RRM/RBD/RNP motifs) family protein |
chr5:21131081-21133318 FORWARD LENGTH=357
Length = 357
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 7/74 (9%)
Query: 7 RTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAEDAIYYRD 66
+ ++ GN D R ++E +F K+G + +D+K G+AFV ED RDAEDAI D
Sbjct: 2 KPVFCGNFEYDARESDLERLFRKYGKVERVDMKA-----GFAFVYMEDERDAEDAIRALD 56
Query: 67 GYDF--DGFRLRVE 78
+++ G RLRVE
Sbjct: 57 RFEYGRTGRRLRVE 70
>AT5G52040.1 | Symbols: ATRSP41, RS41, At-RS41 | RNA-binding
(RRM/RBD/RNP motifs) family protein |
chr5:21131081-21133318 FORWARD LENGTH=356
Length = 356
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 7/74 (9%)
Query: 7 RTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAEDAIYYRD 66
+ ++ GN D R ++E +F K+G + +D+K G+AFV ED RDAEDAI D
Sbjct: 2 KPVFCGNFEYDARESDLERLFRKYGKVERVDMKA-----GFAFVYMEDERDAEDAIRALD 56
Query: 67 GYDF--DGFRLRVE 78
+++ G RLRVE
Sbjct: 57 RFEYGRTGRRLRVE 70
>AT3G53500.1 | Symbols: RSZ32, RS2Z32, At-RS2Z | RNA-binding
(RRM/RBD/RNP motifs) family protein with retrovirus
zinc finger-like domain | chr3:19834557-19835896
REVERSE LENGTH=243
Length = 243
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 26/34 (76%)
Query: 47 YAFVQFEDARDAEDAIYYRDGYDFDGFRLRVELA 80
YAFV+F D RDA+DA YY DG DFDG R+ VE +
Sbjct: 5 YAFVEFSDPRDADDARYYLDGRDFDGSRITVEAS 38
>AT4G12640.1 | Symbols: | RNA recognition motif (RRM)-containing
protein | chr4:7462697-7467630 FORWARD LENGTH=823
Length = 823
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 40/77 (51%), Gaps = 7/77 (9%)
Query: 6 SRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPG--YAFVQFEDARDAEDAIY 63
SR ++VGNLP I RE+ D F +FG + + + PG YAFV F DA AI
Sbjct: 22 SRHLWVGNLPHGILERELADRFLRFGELESLAFQ-----PGRSYAFVNFNHDEDAFAAIE 76
Query: 64 YRDGYDFDGFRLRVELA 80
G+ G LR+E A
Sbjct: 77 SLQGFPLSGNPLRIEFA 93
>AT5G12190.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr5:3940731-3941105 REVERSE LENGTH=124
Length = 124
Score = 47.8 bits (112), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%)
Query: 6 SRTIYVGNLPGDIRLREVEDIFYKFGPIVDIDLKIPPRPPGYAFVQFEDARDAEDAIYYR 65
+R +YV NLP +I E+ DIF K+G I I + G AFV +ED DA++A+ +
Sbjct: 18 NRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHL 77
Query: 66 DGYD 69
G++
Sbjct: 78 SGFN 81
>AT1G71800.1 | Symbols: CSTF64 | cleavage stimulating factor 64 |
chr1:26999606-27001850 FORWARD LENGTH=461
Length = 461
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 1 MSSRSS--RTIYVGNLPGDIRLREVEDIFYKFGPIVDIDL---KIPPRPPGYAFVQFEDA 55
M+S SS R ++VGN+P D ++ +I + GP+V L + +P GY F +++D
Sbjct: 1 MASSSSQRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDE 60
Query: 56 RDAEDAIYYRDGYDFDGFRLRVELA 80
A A Y+ +G +LRV+ A
Sbjct: 61 ETALSARRNLQSYEINGRQLRVDFA 85