Miyakogusa Predicted Gene

Lj5g3v1498020.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1498020.1 Non Chatacterized Hit- tr|C0PAR4|C0PAR4_MAIZE
Uncharacterized protein OS=Zea mays PE=2
SV=1,45.26,1e-17,ZF_RING_2,Zinc finger, RING-type; RING/U-box,NULL;
Ring finger,Zinc finger, RING-type; no descriptio,CUFF.55344.1
         (309 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05545.1 | Symbols:  | RING/U-box superfamily protein | chr3:...   268   3e-72
AT2G47700.1 | Symbols: RFI2 | RING/U-box superfamily protein | c...   190   1e-48
AT4G13490.1 | Symbols:  | RING/U-box superfamily protein | chr4:...    88   8e-18
AT2G15260.1 | Symbols:  | RING/U-box superfamily protein | chr2:...    76   3e-14

>AT3G05545.1 | Symbols:  | RING/U-box superfamily protein |
           chr3:1609436-1612133 FORWARD LENGTH=425
          Length = 425

 Score =  268 bits (686), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 159/295 (53%), Positives = 195/295 (66%), Gaps = 18/295 (6%)

Query: 27  SVSCSICLEVVADNGDRSWAKLHCGHQFHLDCIGSAFNIKGAMQCPNCRKIEKGQWLYAN 86
           SV+CSICLE V  NGDR+WA L C HQFHLDCIGSAFN KG MQCPNCRK+EKGQWLYAN
Sbjct: 34  SVACSICLETVVKNGDRAWANLQCDHQFHLDCIGSAFNAKGVMQCPNCRKVEKGQWLYAN 93

Query: 87  GGRSYPEFNMDDWTYDEDLYDL-SYSELQSFGVHWCPFGNLARLPSPFEEGEFSQTAYHD 145
           G RSYPEFN++DW ++ED+YD+ +YSE+ SFGVHWCPFG+ ARLPS FE+GEFS ++YHD
Sbjct: 94  GCRSYPEFNVEDWVHEEDIYDIGAYSEM-SFGVHWCPFGSSARLPS-FEDGEFSPSSYHD 151

Query: 146 MLGQHAIFAEHTAVSSGSHHCPYIAYV---GPIHPSSSNSGGTVSEASNFNHWN-GSSVP 201
           +LGQ   + E  A ++G H CPY+ Y         SS  + G    +S  +HWN GSSV 
Sbjct: 152 LLGQQGYYTEPAAPTAG-HPCPYVTYFGPVHSPSSSSGGAAGVSDSSSFSSHWNTGSSVS 210

Query: 202 NDMPASFTFPAVDLHYHGWEHHSPP------FSTASSRLVAADQPSVSPGNQRPVRG-GS 254
            ++P  + FP VD HYHGW++H PP      FS + + + +  QP+  P   R  R  GS
Sbjct: 211 GEVPTPYGFP-VDPHYHGWDYHPPPPPPPQHFSASGAHVGSPTQPTPPPAAARTSRANGS 269

Query: 255 DV--PRSGSFMHPFLVGHXXXXXXXXXXXXXLIPPYPGSNARARDRVQALQAYYQ 307
           D+  PR   F  PF                   PP+PGSNAR RDR+QALQAYYQ
Sbjct: 270 DMIRPRPPHFTRPFHGHSSSGRAGSSVASVPRTPPFPGSNARTRDRMQALQAYYQ 324


>AT2G47700.1 | Symbols: RFI2 | RING/U-box superfamily protein |
           chr2:19552506-19554351 REVERSE LENGTH=358
          Length = 358

 Score =  190 bits (483), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 124/279 (44%), Positives = 152/279 (54%), Gaps = 47/279 (16%)

Query: 28  VSCSICLEVVADNGDRSWAKLHCGHQFHLDCIGSAFNIKGAMQCPNCRKIEKGQWLYANG 87
           VSCSICLE V D+G RS AKL CGHQFHLDCIGSAFN+KGAMQCPNCR +EKGQWLYANG
Sbjct: 36  VSCSICLESVLDDGTRSKAKLQCGHQFHLDCIGSAFNMKGAMQCPNCRNVEKGQWLYANG 95

Query: 88  G-RSYPEFNMDDWTYDEDLYDLSYSELQSFGVHWCPFGNLARLPSPFEEGEFSQTAYH-D 145
             R +PEF+M+DW  +EDLY LSY E+Q + VHWCPFG L++  + FEE E + T YH +
Sbjct: 96  STRPFPEFSMEDWIPEEDLYGLSYPEMQ-YRVHWCPFGELSQAAASFEELEPATTTYHTE 154

Query: 146 MLGQHAIFAEHTAVSSGSHHCPYIAYVGP---IHPSSSNSGGTVSEASNFNHWNGSSVPN 202
             G HA    H+          Y+AYVGP     P +S++  T         WN  S  N
Sbjct: 155 FHGHHAAAVNHS----------YLAYVGPGPAATPRTSDNNSTDDHP-----WNSHS--N 197

Query: 203 DMPASFTFPAVDLHYHGWEHHSPPFSTASSRLVAADQPSVSPGNQRPVRGGSDVPRSGSF 262
           D    F    V   YH   HHSP FS  ++ +V  +               S   R   +
Sbjct: 198 DH---FHQLPVAPQYH---HHSPSFSLPAAHVVDGEV-------------DSSAARGLPY 238

Query: 263 MHPFLVGHXXXXXXXXXXXXXLIPPYPGSNARARDRVQA 301
            HPFL  H              I  Y GS+ + R++  A
Sbjct: 239 AHPFLFSHRSNQRSSPA-----INSYQGSSTQMREQHHA 272


>AT4G13490.1 | Symbols:  | RING/U-box superfamily protein |
          chr4:7839137-7840284 REVERSE LENGTH=226
          Length = 226

 Score = 87.8 bits (216), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 36/68 (52%), Positives = 50/68 (73%), Gaps = 1/68 (1%)

Query: 30 CSICLEVVADNGD-RSWAKLHCGHQFHLDCIGSAFNIKGAMQCPNCRKIEKGQWLYANGG 88
          C++CLE +A++ D R+  KL C H+FHLDC+GS+FNIK  M+CP CR+IEKG+WL+A   
Sbjct: 22 CAVCLEPLANDADERTVVKLRCSHKFHLDCVGSSFNIKNKMECPCCRQIEKGKWLFAEPV 81

Query: 89 RSYPEFNM 96
              E +M
Sbjct: 82 DQLEEDDM 89


>AT2G15260.1 | Symbols:  | RING/U-box superfamily protein |
           chr2:6630528-6634008 FORWARD LENGTH=362
          Length = 362

 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 32/60 (53%), Positives = 41/60 (68%), Gaps = 2/60 (3%)

Query: 30  CSICLEVVADNGD--RSWAKLHCGHQFHLDCIGSAFNIKGAMQCPNCRKIEKGQWLYANG 87
           CSIC   + +  D  R+   L C H+FHLDCIGSA+N KG M+CPNCR IE G W +++G
Sbjct: 123 CSICRGALVNENDVQRTLVTLKCVHKFHLDCIGSAYNAKGFMECPNCRNIEPGHWQFSDG 182