Miyakogusa Predicted Gene
- Lj5g3v1496740.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1496740.1 tr|G7I8P0|G7I8P0_MEDTR ATP-dependent DNA helicase
Q4 OS=Medicago truncatula GN=MTR_1g083250 PE=4 SV=,65.95,0,DNA
HELICASE,NULL; DNA HELICASE RECQ FAMILY MEMBER,NULL;
UBA,Ubiquitin-associated/translation elonga,CUFF.55315.1
(371 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G27680.1 | Symbols: RECQSIM | RECQ helicase SIM | chr5:979424... 353 2e-97
AT4G35740.1 | Symbols: RecQl3, ATRECQ3 | DEAD/DEAH box RNA helic... 163 2e-40
AT1G31360.1 | Symbols: RECQL2, ATRECQ2, MED34 | RECQ helicase L2... 158 5e-39
AT1G60930.1 | Symbols: RECQL4B, ATRECQ4B, RECQ4B | RECQ helicase... 152 3e-37
AT1G10930.1 | Symbols: ATSGS1, RECQ4A, ATRECQ4A | DNA helicase (... 151 7e-37
AT3G05740.1 | Symbols: RECQI1 | RECQ helicase l1 | chr3:1698180-... 147 2e-35
AT1G31360.2 | Symbols: RECQL2, MED34 | RECQ helicase L2 | chr1:1... 115 5e-26
AT1G27880.1 | Symbols: | DEAD/DEAH box RNA helicase family prot... 105 4e-23
AT4G35740.2 | Symbols: RecQl3, ATRECQ3 | DEAD/DEAH box RNA helic... 94 2e-19
>AT5G27680.1 | Symbols: RECQSIM | RECQ helicase SIM |
chr5:9794244-9798637 REVERSE LENGTH=858
Length = 858
Score = 353 bits (905), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 194/374 (51%), Positives = 250/374 (66%), Gaps = 19/374 (5%)
Query: 6 NTSSDQVIAEMVEMGFKHSTILEAIEAVG-PSIRSAVEHIFKXXXXXXXXXXXXXXXXXF 64
+ SSDQ++ ++VEMGF+ LEA++AVG S AVE+I K
Sbjct: 2 DLSSDQLVMKIVEMGFEKLDALEAVKAVGGKSCDDAVEYILKGNHRTGGFKPASLLCSSG 61
Query: 65 KSR--NGNALNKQXXXXXXXXXXXXIDHYFKPIGKVKSKKSENEGVVNDDAMRAEELDVT 122
++ A+ +DH F+ + + K KK + G V D+ +L+
Sbjct: 62 SNKILGKRAMPSSFSSSESKRQSSLLDH-FRSVNQNK-KKGDTFGTVEVDS----QLETV 115
Query: 123 SDWEHNK-VKKS-------EXXXXXXXXXXXXXXXXXXWEHTVSKLLQKHFGFSALKSFQ 174
S EH++ V+KS WE V+ +L+ FG S+L+SFQ
Sbjct: 116 S--EHSEEVRKSLAPVFMESSCFPEGQLLNGCSEASSSWEKRVNSILRNRFGISSLRSFQ 173
Query: 175 KEALAAWVANEDCLVLAATGSGKSLCFQVPALLTGKVVVVISPLISLMQDQCWKLTKHGL 234
+EAL+ WVA++DCLVLAATGSGKSLCFQ+PALLTGKVVVVISPLISLM DQC KL++H +
Sbjct: 174 REALSTWVAHKDCLVLAATGSGKSLCFQIPALLTGKVVVVISPLISLMHDQCLKLSRHKV 233
Query: 235 SACFLGSGQRDDTVERKAMKGMYSIIYVCPETLLRLLPQLEKLAKGRGIALFAIDEVHCV 294
SACFLGSGQ D+ +E KAM+GMY IIYVCPET++RL+ L+KLAK GIALFAIDE HCV
Sbjct: 234 SACFLGSGQLDNCIEEKAMQGMYQIIYVCPETVVRLIKPLQKLAKTHGIALFAIDEAHCV 293
Query: 295 SKWGHDFRPAYRELSVLRESFCTSTIKSLKFDIPLMALTATSTKRVREDILESLCMSKGT 354
SKWGHDFRP YR+LSVLRE+FC S ++ L++D+P+MALTAT+T V+EDILESL +SK T
Sbjct: 294 SKWGHDFRPHYRKLSVLRENFCASNLEFLEYDVPIMALTATATVNVQEDILESLHLSKET 353
Query: 355 KVVLTSFFRPNLRF 368
K+VLTSFFRPNL+F
Sbjct: 354 KIVLTSFFRPNLQF 367
>AT4G35740.1 | Symbols: RecQl3, ATRECQ3 | DEAD/DEAH box RNA helicase
family protein | chr4:16936233-16940172 FORWARD
LENGTH=713
Length = 713
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 86/217 (39%), Positives = 132/217 (60%), Gaps = 17/217 (7%)
Query: 159 KLLQKHFGFSALKSFQKEALAAWVANEDCLVLAATGSGKSLCFQVPALLTGKVVVVISPL 218
KLL+ HFG + + Q EA+ A V+ DC L TG GKS+C+Q+PAL +V+V+SPL
Sbjct: 26 KLLRWHFGHADFRGKQLEAIQAVVSGRDCFCLMPTGGGKSICYQIPALAKPGIVLVVSPL 85
Query: 219 ISLMQDQCWKLTKHGLSACFLGSGQRDDTVER-----KAMKGMYSIIYVCPETLLR--LL 271
I+LM++Q L + G++A +L S Q + + K ++YV PE + +
Sbjct: 86 IALMENQVMALKEKGIAAEYLSSTQATHVKNKIHEDLDSGKPSVRLLYVTPELIATKGFM 145
Query: 272 PQLEKLAKGRGIALFAIDEVHCVSKWGHDFRPAYRELSVLRESFCTSTIKSLKFDIPLMA 331
+L KL + L AIDE HC+S WGHDFRP+YR+LS LR+S D+P++A
Sbjct: 146 LKLRKLHSRGLLNLIAIDEAHCISSWGHDFRPSYRQLSTLRDSLA---------DVPVLA 196
Query: 332 LTATSTKRVREDILESLCMSKGTKVVLTSFFRPNLRF 368
LTAT+ +V++D+++SL + + V+ +SF RPN+ +
Sbjct: 197 LTATAAPKVQKDVIDSLNL-RNPLVLKSSFNRPNIFY 232
>AT1G31360.1 | Symbols: RECQL2, ATRECQ2, MED34 | RECQ helicase L2 |
chr1:11232422-11237412 FORWARD LENGTH=705
Length = 705
Score = 158 bits (400), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 90/224 (40%), Positives = 132/224 (58%), Gaps = 18/224 (8%)
Query: 153 WEHTVSKLLQKHFGFSALKSFQKEALAAWVANEDCLVLAATGSGKSLCFQVPALLTGKVV 212
W+ + FG S ++ QKE + A + D LV+ A G GKSLC+Q+PA+L G
Sbjct: 73 WDSRADDVRFNVFGISKYRANQKEIINAIMTGRDVLVIMAAGGGKSLCYQLPAMLRGGTT 132
Query: 213 VVISPLISLMQDQCWKLTKHGLSACFL--GSGQRDDTVERKAM-KGM--YSIIYVCPETL 267
+V+SPL+SL+QDQ L G+SA L SG+ ++ KA+ KG I+YV PE +
Sbjct: 133 LVVSPLLSLIQDQVMGLAALGISAYMLTSTSGKENEKFVYKALEKGEDDLKILYVTPEKV 192
Query: 268 ---LRLLPQLEKLAKGRGIALFAIDEVHCVSKWGHDFRPAYRELSVLRESFCTSTIKSLK 324
R + +LEK ++L +IDE HC S+WGHDFRP Y+ LS+L+ F
Sbjct: 193 SKSKRFMSKLEKCHNAGRLSLISIDEAHCCSQWGHDFRPDYKNLSILKTQFPK------- 245
Query: 325 FDIPLMALTATSTKRVREDILESLCMSKGTKVVLTSFFRPNLRF 368
+P++ALTAT+T++V+ D++E L + K K V +S RPNL +
Sbjct: 246 --VPMVALTATATQKVQNDLIEMLHIPKCVKFV-SSVNRPNLFY 286
>AT1G60930.1 | Symbols: RECQL4B, ATRECQ4B, RECQ4B | RECQ helicase
L4B | chr1:22431093-22438302 REVERSE LENGTH=1150
Length = 1150
Score = 152 bits (384), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 87/212 (41%), Positives = 124/212 (58%), Gaps = 18/212 (8%)
Query: 165 FGFSALKSFQKEALAAWVANEDCLVLAATGSGKSLCFQVPALLTGKVVVVISPLISLMQD 224
FG + + Q+E + A ++ D VL TG GKSL +Q+PALL + +VISPL+SL+QD
Sbjct: 465 FGNHSFRPNQREIINATMSGCDVFVLMPTGGGKSLTYQLPALLCAGITLVISPLVSLIQD 524
Query: 225 QCWKLTKHGLSACFLGSG-----QRDDTVERKAMKGMYSIIYVCPETLLR---LLPQLEK 276
Q L + +SA L +G Q + E + K Y ++YV PE + + LL LE
Sbjct: 525 QIMNLLQTNISAASLSAGMEWAEQLEILQELSSEKSKYKLLYVTPEKVAKSESLLRHLEI 584
Query: 277 LAKGRGIALFAIDEVHCVSKWGHDFRPAYRELSVLRESFCTSTIKSLKFDIPLMALTATS 336
L +A F IDE HCVS+WGHDFRP Y+ L VL++ F +IP++ALTAT+
Sbjct: 585 LNSRSLLARFVIDEAHCVSQWGHDFRPDYQGLGVLKQKFP---------NIPMLALTATA 635
Query: 337 TKRVREDILESLCMSKGTKVVLTSFFRPNLRF 368
T V+ED++++L + V SF RPNL +
Sbjct: 636 TTSVKEDVVQALGLVNCV-VFRQSFNRPNLWY 666
>AT1G10930.1 | Symbols: ATSGS1, RECQ4A, ATRECQ4A | DNA helicase
(RECQl4A) | chr1:3648032-3654997 REVERSE LENGTH=1188
Length = 1188
Score = 151 bits (382), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 86/224 (38%), Positives = 126/224 (56%), Gaps = 18/224 (8%)
Query: 153 WEHTVSKLLQKHFGFSALKSFQKEALAAWVANEDCLVLAATGSGKSLCFQVPALLTGKVV 212
W + +K FG + + Q+E + A ++ D VL TG GKSL +Q+PAL+ G +
Sbjct: 437 WTRKLEVNNKKVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICGGIT 496
Query: 213 VVISPLISLMQDQCWKLTKHGLSACFLGSG-----QRDDTVERKAMKGMYSIIYVCPETL 267
+VISPL+SL+QDQ L + + A L +G Q E + Y ++YV PE +
Sbjct: 497 LVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLKIFQELNSEHSKYKLLYVTPEKV 556
Query: 268 LR---LLPQLEKLAKGRGIALFAIDEVHCVSKWGHDFRPAYRELSVLRESFCTSTIKSLK 324
+ LL LE L +A F IDE HCVS+WGHDFRP Y+ L +L++ F
Sbjct: 557 AKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFP-------- 608
Query: 325 FDIPLMALTATSTKRVREDILESLCMSKGTKVVLTSFFRPNLRF 368
+IP++ALTAT+T V+ED++++L + V SF RPNL +
Sbjct: 609 -NIPVLALTATATASVKEDVVQALGLVNCV-VFRQSFNRPNLWY 650
>AT3G05740.1 | Symbols: RECQI1 | RECQ helicase l1 |
chr3:1698180-1701228 FORWARD LENGTH=606
Length = 606
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/213 (40%), Positives = 120/213 (56%), Gaps = 19/213 (8%)
Query: 165 FGFSALKSFQKEALAAWVANEDCLVLAATGSGKSLCFQVPALLTGKVVVVISPLISLMQD 224
FG + Q +A A + +DC VL TG GKSLC+Q+PA L V +VISPL+SL+QD
Sbjct: 202 FGNKVFRPLQHQACRASMERKDCFVLMPTGGGKSLCYQLPATLKAGVTIVISPLLSLIQD 261
Query: 225 QCWKLT-KHGLSACFLGSGQRDDTV-----ERKAMKGMYSIIYVCPETLL---RLLPQLE 275
Q L K G+ A FL S Q E + ++YV PE + L L
Sbjct: 262 QIVALNLKFGIPATFLNSQQTSSQAAAVLQELRRDNPSCKLLYVTPEKIAGSSSFLETLR 321
Query: 276 KLAKGRGIALFAIDEVHCVSKWGHDFRPAYRELSVLRESFCTSTIKSLKFDIPLMALTAT 335
L + +A F +DE HCVS+WGHDFRP YREL L+++F +P+MALTAT
Sbjct: 322 CLDRKGLLAGFVVDEAHCVSQWGHDFRPDYRELGCLKQNFPR---------VPVMALTAT 372
Query: 336 STKRVREDILESLCMSKGTKVVLTSFFRPNLRF 368
+T+ V +D+L+SL + + V+ SF R NL++
Sbjct: 373 ATESVCQDVLKSLRIPRAP-VLKMSFDRINLKY 404
>AT1G31360.2 | Symbols: RECQL2, MED34 | RECQ helicase L2 |
chr1:11233174-11237412 FORWARD LENGTH=580
Length = 580
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 69/171 (40%), Positives = 102/171 (59%), Gaps = 18/171 (10%)
Query: 206 LLTGKVVVVISPLISLMQDQCWKLTKHGLSACFLGS--GQRDDTVERKAM-KGM--YSII 260
+L G +V+SPL+SL+QDQ L G+SA L S G+ ++ KA+ KG I+
Sbjct: 1 MLRGGTTLVVSPLLSLIQDQVMGLAALGISAYMLTSTSGKENEKFVYKALEKGEDDLKIL 60
Query: 261 YVCPETL---LRLLPQLEKLAKGRGIALFAIDEVHCVSKWGHDFRPAYRELSVLRESFCT 317
YV PE + R + +LEK ++L +IDE HC S+WGHDFRP Y+ LS+L+ F
Sbjct: 61 YVTPEKVSKSKRFMSKLEKCHNAGRLSLISIDEAHCCSQWGHDFRPDYKNLSILKTQFPK 120
Query: 318 STIKSLKFDIPLMALTATSTKRVREDILESLCMSKGTKVVLTSFFRPNLRF 368
+P++ALTAT+T++V+ D++E L + K K V +S RPNL +
Sbjct: 121 ---------VPMVALTATATQKVQNDLIEMLHIPKCVKFV-SSVNRPNLFY 161
>AT1G27880.1 | Symbols: | DEAD/DEAH box RNA helicase family protein
| chr1:9708940-9713901 FORWARD LENGTH=911
Length = 911
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 58/164 (35%), Positives = 94/164 (57%), Gaps = 17/164 (10%)
Query: 154 EHTVSKLLQKHFGFSALKSFQKEALAAWVANEDCLVLAATGSGKSLCFQVPALLTGKVVV 213
+ ++KLL +G+ + + Q +A+ + +++ TG+GKSLC+Q+PA++ + +
Sbjct: 254 DENLTKLLNLVYGYDSFRDGQLQAIKMILGGSSTMLVLPTGAGKSLCYQIPAMILPGITL 313
Query: 214 VISPLISLMQDQCWKLT---KHGLSACFLGSGQRDDTVE---RKAMKGMYSIIYVCPETL 267
V+SPL+SLM DQ L K GL L S QR + RK +G+ +++V PE L
Sbjct: 314 VVSPLVSLMIDQLKHLPSIIKGGL----LSSSQRPEEATETLRKLKEGIIKVLFVSPERL 369
Query: 268 LRLLPQLEKLAKGR---GIALFAIDEVHCVSKWGHDFRPAYREL 308
L +E L+ R ++L +DE HCVS+W H+FRP+Y L
Sbjct: 370 L----NVEFLSMFRMSLSVSLVVVDEAHCVSEWSHNFRPSYMRL 409
>AT4G35740.2 | Symbols: RecQl3, ATRECQ3 | DEAD/DEAH box RNA helicase
family protein | chr4:16936788-16940172 FORWARD
LENGTH=620
Length = 620
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 53/147 (36%), Positives = 85/147 (57%), Gaps = 17/147 (11%)
Query: 229 LTKHGLSACFLGSGQRDDTVER-----KAMKGMYSIIYVCPETLLR--LLPQLEKLAKGR 281
L + G++A +L S Q + + K ++YV PE + + +L KL
Sbjct: 3 LKEKGIAAEYLSSTQATHVKNKIHEDLDSGKPSVRLLYVTPELIATKGFMLKLRKLHSRG 62
Query: 282 GIALFAIDEVHCVSKWGHDFRPAYRELSVLRESFCTSTIKSLKFDIPLMALTATSTKRVR 341
+ L AIDE HC+S WGHDFRP+YR+LS LR+S D+P++ALTAT+ +V+
Sbjct: 63 LLNLIAIDEAHCISSWGHDFRPSYRQLSTLRDSLA---------DVPVLALTATAAPKVQ 113
Query: 342 EDILESLCMSKGTKVVLTSFFRPNLRF 368
+D+++SL + + V+ +SF RPN+ +
Sbjct: 114 KDVIDSLNL-RNPLVLKSSFNRPNIFY 139