Miyakogusa Predicted Gene

Lj5g3v1495690.2

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1495690.2 tr|B3H5I5|B3H5I5_ARATH Ubiquitin family protein
OS=Arabidopsis thaliana GN=At5g57860 PE=4
SV=1,65.15,1e-17,Ubiquitin-like,NULL; AT7SL-1 (ARABIDOPSIS 7SL RNA
1),NULL; UBIQUITIN,NULL; ubiquitin,Ubiquitin; UBIQ,CUFF.55311.2
         (103 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G57860.2 | Symbols:  | Ubiquitin-like superfamily protein | c...   137   1e-33
AT5G57860.3 | Symbols:  | Ubiquitin-like superfamily protein | c...   137   1e-33
AT5G57860.1 | Symbols:  | Ubiquitin-like superfamily protein | c...   137   1e-33
AT5G57860.4 | Symbols:  | Ubiquitin-like superfamily protein | c...    94   2e-20

>AT5G57860.2 | Symbols:  | Ubiquitin-like superfamily protein |
          chr5:23437991-23439087 FORWARD LENGTH=95
          Length = 95

 Score =  137 bits (346), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 64/92 (69%), Positives = 79/92 (85%)

Query: 1  MDMYIRVKRKMTTYFIRCKPSDKILDVKQKLEELVDQPANNQQLILHGTGEVLEDAKTLA 60
          M MYIRVKR  TTYFI+C P++ +LDVKQKL  L++QP NNQ+L+L  T EVLED+K+LA
Sbjct: 1  MAMYIRVKRMKTTYFIQCDPTETVLDVKQKLFALIEQPVNNQRLVLMSTEEVLEDSKSLA 60

Query: 61 DQKVENDAVVALALRKDDNEFEEVNIVRPSEF 92
          DQKVENDAVVAL L+KDDNEFE+VNI +P++F
Sbjct: 61 DQKVENDAVVALTLKKDDNEFEDVNIAQPTDF 92


>AT5G57860.3 | Symbols:  | Ubiquitin-like superfamily protein |
          chr5:23437991-23439087 FORWARD LENGTH=95
          Length = 95

 Score =  137 bits (346), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 64/92 (69%), Positives = 79/92 (85%)

Query: 1  MDMYIRVKRKMTTYFIRCKPSDKILDVKQKLEELVDQPANNQQLILHGTGEVLEDAKTLA 60
          M MYIRVKR  TTYFI+C P++ +LDVKQKL  L++QP NNQ+L+L  T EVLED+K+LA
Sbjct: 1  MAMYIRVKRMKTTYFIQCDPTETVLDVKQKLFALIEQPVNNQRLVLMSTEEVLEDSKSLA 60

Query: 61 DQKVENDAVVALALRKDDNEFEEVNIVRPSEF 92
          DQKVENDAVVAL L+KDDNEFE+VNI +P++F
Sbjct: 61 DQKVENDAVVALTLKKDDNEFEDVNIAQPTDF 92


>AT5G57860.1 | Symbols:  | Ubiquitin-like superfamily protein |
          chr5:23437991-23439087 FORWARD LENGTH=95
          Length = 95

 Score =  137 bits (346), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 64/92 (69%), Positives = 79/92 (85%)

Query: 1  MDMYIRVKRKMTTYFIRCKPSDKILDVKQKLEELVDQPANNQQLILHGTGEVLEDAKTLA 60
          M MYIRVKR  TTYFI+C P++ +LDVKQKL  L++QP NNQ+L+L  T EVLED+K+LA
Sbjct: 1  MAMYIRVKRMKTTYFIQCDPTETVLDVKQKLFALIEQPVNNQRLVLMSTEEVLEDSKSLA 60

Query: 61 DQKVENDAVVALALRKDDNEFEEVNIVRPSEF 92
          DQKVENDAVVAL L+KDDNEFE+VNI +P++F
Sbjct: 61 DQKVENDAVVALTLKKDDNEFEDVNIAQPTDF 92


>AT5G57860.4 | Symbols:  | Ubiquitin-like superfamily protein |
          chr5:23437991-23438474 FORWARD LENGTH=67
          Length = 67

 Score = 94.0 bits (232), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 54/66 (81%)

Query: 1  MDMYIRVKRKMTTYFIRCKPSDKILDVKQKLEELVDQPANNQQLILHGTGEVLEDAKTLA 60
          M MYIRVKR  TTYFI+C P++ +LDVKQKL  L++QP NNQ+L+L  T EVLED+K+LA
Sbjct: 1  MAMYIRVKRMKTTYFIQCDPTETVLDVKQKLFALIEQPVNNQRLVLMSTEEVLEDSKSLA 60

Query: 61 DQKVEN 66
          DQKV +
Sbjct: 61 DQKVSH 66