Miyakogusa Predicted Gene

Lj5g3v1494610.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1494610.1 Non Chatacterized Hit- tr|I3TA49|I3TA49_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,100,0,SERYL-TRNA
SYNTHETASE,Serine-tRNA ligase, type1; tRNA-synt_2b,Aminoacyl-tRNA
synthetase, class II (G,CUFF.55350.1
         (141 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27470.1 | Symbols:  | seryl-tRNA synthetase / serine--tRNA l...   244   9e-66
AT1G11870.1 | Symbols: ATSRS, OVA7, SRS | Seryl-tRNA synthetase ...   115   8e-27
AT1G11870.2 | Symbols: ATSRS, SRS | Seryl-tRNA synthetase | chr1...   115   9e-27

>AT5G27470.1 | Symbols:  | seryl-tRNA synthetase / serine--tRNA
           ligase | chr5:9695087-9697154 FORWARD LENGTH=451
          Length = 451

 Score =  244 bits (624), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 111/144 (77%), Positives = 132/144 (91%), Gaps = 3/144 (2%)

Query: 1   MHEEMLKNSEDFYKELNIPYRVVSIVSGALNDAAAKKYDLEAWFPASQAYRELVSCSNCT 60
           M +EM+KNSEDFY+ L +PY++VSIVSGALNDAAAKKYDLEAWFP+S+ +RELVSCSNCT
Sbjct: 307 MLDEMMKNSEDFYQALKLPYQIVSIVSGALNDAAAKKYDLEAWFPSSETFRELVSCSNCT 366

Query: 61  DYQARRLEIRYGQRKSNEQLKQYVHLLNSTLTATERTICCILENNQKDDGVEIPEALRPY 120
           DYQARRLEIRYGQ+KSNEQ KQYVH+LNSTLTATERTICCILEN Q++DGV+IPE L+P+
Sbjct: 367 DYQARRLEIRYGQKKSNEQTKQYVHMLNSTLTATERTICCILENYQREDGVDIPEVLQPF 426

Query: 121 MGGKSFIPFKNQP---EAKGKKSK 141
           MGG++F+PFK +P   + KGKKSK
Sbjct: 427 MGGETFLPFKAKPVVADTKGKKSK 450


>AT1G11870.1 | Symbols: ATSRS, OVA7, SRS | Seryl-tRNA synthetase |
           chr1:4003895-4006556 FORWARD LENGTH=512
          Length = 512

 Score =  115 bits (289), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 56/138 (40%), Positives = 82/138 (59%), Gaps = 11/138 (7%)

Query: 1   MHEEMLKNSEDFYKELNIPYRVVSIVSGALNDAAAKKYDLEAWFPASQAYRELVSCSNCT 60
            H+E+++  ED +  L + ++ + + +  L   A +K+D+EAW P    + E+ S SNCT
Sbjct: 370 FHQELIQIEEDLFTSLGLHFKTLDMATADLGAPAYRKFDIEAWMPGLGRFGEISSASNCT 429

Query: 61  DYQARRLEIRY--------GQRKSNEQL--KQYVHLLNSTLTATERTICCILENNQKDDG 110
           DYQ+RRL IRY        G +K    L   ++VH LN+T  A  R + C+LEN Q++DG
Sbjct: 430 DYQSRRLGIRYRPSEPPQTGPKKGKANLPATKFVHTLNATACAVPRMMVCLLENYQQEDG 489

Query: 111 -VEIPEALRPYMGGKSFI 127
            V IPE LRP+MGG   I
Sbjct: 490 SVVIPEPLRPFMGGIELI 507


>AT1G11870.2 | Symbols: ATSRS, SRS | Seryl-tRNA synthetase |
           chr1:4003895-4006556 FORWARD LENGTH=514
          Length = 514

 Score =  115 bits (288), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 56/138 (40%), Positives = 82/138 (59%), Gaps = 11/138 (7%)

Query: 1   MHEEMLKNSEDFYKELNIPYRVVSIVSGALNDAAAKKYDLEAWFPASQAYRELVSCSNCT 60
            H+E+++  ED +  L + ++ + + +  L   A +K+D+EAW P    + E+ S SNCT
Sbjct: 372 FHQELIQIEEDLFTSLGLHFKTLDMATADLGAPAYRKFDIEAWMPGLGRFGEISSASNCT 431

Query: 61  DYQARRLEIRY--------GQRKSNEQL--KQYVHLLNSTLTATERTICCILENNQKDDG 110
           DYQ+RRL IRY        G +K    L   ++VH LN+T  A  R + C+LEN Q++DG
Sbjct: 432 DYQSRRLGIRYRPSEPPQTGPKKGKANLPATKFVHTLNATACAVPRMMVCLLENYQQEDG 491

Query: 111 -VEIPEALRPYMGGKSFI 127
            V IPE LRP+MGG   I
Sbjct: 492 SVVIPEPLRPFMGGIELI 509