Miyakogusa Predicted Gene

Lj5g3v1494590.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1494590.1 Non Chatacterized Hit- tr|D8SH96|D8SH96_SELML
Putative uncharacterized protein (Fragment)
OS=Selagin,30.71,4e-17,coiled-coil,NULL; seg,NULL;
Q8LI99_ORYSA_Q8LI99;,NULL,CUFF.55300.1
         (195 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G54860.1 | Symbols:  | Glycoprotein membrane precursor GPI-an...   110   5e-25
AT5G19250.1 | Symbols:  | Glycoprotein membrane precursor GPI-an...   110   8e-25
AT3G06035.1 | Symbols:  | Glycoprotein membrane precursor GPI-an...   109   1e-24
AT5G19230.1 | Symbols:  | Glycoprotein membrane precursor GPI-an...    87   8e-18
AT5G19240.1 | Symbols:  | Glycoprotein membrane precursor GPI-an...    81   4e-16

>AT1G54860.1 | Symbols:  | Glycoprotein membrane precursor
           GPI-anchored | chr1:20457522-20458434 REVERSE LENGTH=200
          Length = 200

 Score =  110 bits (275), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 58/168 (34%), Positives = 95/168 (56%), Gaps = 9/168 (5%)

Query: 9   YLLVAVFSLHLLPSPVMCGEEEKTLLHDINTYRKIFNLPVLEKRSKLSCLAEKIAXXXXX 68
           + ++ +    L+ + V+  + E  LL  +N+YR    +P   K  K  C+A++IA     
Sbjct: 11  FYIIHLLIFSLISTCVVSNQAEDNLLQGLNSYRTAQRVPPFAKNEKADCVADEIADKLED 70

Query: 69  XXXXKCENFYPA----PGSYS-KLPNFEKSVSKCKINLNTTSGGVVMPVCVPKLDPDYLF 123
                C N   A    PGS   +L N++  +S+CKI+ NTT  G+++PVC+P   P    
Sbjct: 71  Q---PCTNHTTASTVTPGSVPPRLTNYQDILSECKIDPNTTRDGLILPVCIPNRIPTLAL 127

Query: 124 SNYTKSSRFNKYLNNSRYTIAGVGSEDNWMVLIISTDTASGDFSSATS 171
           +NYT++  + +YLN+SRY  AGVGSE  WMV++++T T  G F++  +
Sbjct: 128 TNYTQTG-YARYLNDSRYVGAGVGSEKEWMVVVLTTSTPGGSFTAGVA 174


>AT5G19250.1 | Symbols:  | Glycoprotein membrane precursor
           GPI-anchored | chr5:6471983-6472808 FORWARD LENGTH=196
          Length = 196

 Score =  110 bits (274), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 53/144 (36%), Positives = 82/144 (56%), Gaps = 1/144 (0%)

Query: 28  EEEKTLLHDINTYRKIFNLPVLEKRSKLSCLAEKIAXXXXXXXXXKCENFYPAPGSYSKL 87
           +EE  LL  IN+YR   NL  L       CLA++IA                 PG+    
Sbjct: 28  DEEDVLLTGINSYRASLNLTTLIHNHNAECLADEIADQFKNQPCTNTTGSASVPGTTPGF 87

Query: 88  PNFEKSVSKCKINLNTTSGGVVMPVCVPKLDPDYLFSNYTKSSRFNKYLNNSRYTIAGVG 147
           PN    +SKC++N   T  G ++P CVP LDP  + +N+T  S+++K LN+S++T  G+G
Sbjct: 88  PNLPNLLSKCRLNPTVTRDGAILPACVPNLDPSLVLTNFTM-SQYSKDLNDSKFTGIGIG 146

Query: 148 SEDNWMVLIISTDTASGDFSSATS 171
           S+DNW+V++++T T  G +S A++
Sbjct: 147 SDDNWIVVVLTTSTPEGSYSPASN 170


>AT3G06035.1 | Symbols:  | Glycoprotein membrane precursor
           GPI-anchored | chr3:1823172-1824110 REVERSE LENGTH=200
          Length = 200

 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 90/149 (60%), Gaps = 1/149 (0%)

Query: 28  EEEKTLLHDINTYRKIFNLPVLEKRSKLSCLAEKIAXXXXXXXXXKCENFYPAPGSYSKL 87
           +EE  LL  IN+YR   NL +L K     CLA++IA                 PG+  + 
Sbjct: 27  DEEDILLTGINSYRTTQNLTILSKNENAECLADEIADQFKNKPCTNDTGSATVPGTEPQF 86

Query: 88  PNFEKSVSKCKINLNTTSGGVVMPVCVPKLDPDYLFSNYTKSSRFNKYLNNSRYTIAGVG 147
            N+ + ++KC +N++ T  G +MP CVP+L+ + + +N+TK S+++  LN+S++T  G+G
Sbjct: 87  ANYPQILAKCHLNVSDTRDGSIMPACVPRLESNLVLTNFTK-SQYSMSLNDSKFTGIGIG 145

Query: 148 SEDNWMVLIISTDTASGDFSSATSLLSEA 176
            ED+W+V++++T+T  G +S+AT    E+
Sbjct: 146 KEDDWIVVVLTTNTPEGSYSTATPTKQES 174


>AT5G19230.1 | Symbols:  | Glycoprotein membrane precursor
           GPI-anchored | chr5:6467636-6468337 FORWARD LENGTH=189
          Length = 189

 Score = 87.0 bits (214), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/178 (35%), Positives = 89/178 (50%), Gaps = 12/178 (6%)

Query: 1   MASFKLGLYLLVAVF-SLHLLPSPVMCGEEEKTLLHDINTYRKIFNLPVLEKRSKLSCLA 59
           MA  KL L  L++VF SLH L      GE++  LL   N YR   NL  L K     CLA
Sbjct: 1   MAISKLHLLCLLSVFLSLHRLVLSGTDGEDD-LLLTVFNKYRTGLNLKTLTKNENAECLA 59

Query: 60  EKIAXXXXXXXXXKCENFYPAPGSYSKLPNFEKSVSKCKINLNTTSGGVVMPVCVPKLDP 119
           +++             N  P PG+          ++KC +N      GV+M VC PK D 
Sbjct: 60  DEVVDQLKNQPCTNTNNSAPVPGN--------NLLAKCSLNTTVVRDGVIMQVCFPKHDK 111

Query: 120 DYLFSNYTKSSRFNKYLNNSRYTIAGVGSEDNWMVLIISTDTASGDFSSATSLLSEAW 177
           +   SN+  +S   K LN+S+ T  G+GS D W+V+I++T+T  G +S  T+  S A+
Sbjct: 112 NPDLSNF--NSVVLKNLNDSKITGIGIGSGDIWVVVILTTNTPEGGYSLLTTTNSGAY 167


>AT5G19240.1 | Symbols:  | Glycoprotein membrane precursor
           GPI-anchored | chr5:6470209-6470981 FORWARD LENGTH=199
          Length = 199

 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 80/150 (53%), Gaps = 5/150 (3%)

Query: 23  PVMCGEEEKTLLHDI-NTYRKIFNLPVLEKRSKLSCLAEKIAXXXXXXXXXKCENFYPAP 81
           PV+   + + LL  + N YR+  NL  L+K     CLA+++                  P
Sbjct: 22  PVLSNTDGENLLFTVFNQYRESVNLTNLKKNKNAECLADEVVDQLQNQPCTNTTGSASVP 81

Query: 82  GSYSKLPNFEKSVSKCKINLNTTSGGVVMPVCVPKLDPDYLFSNYTKSSRFNKYLNNSRY 141
           G+   +PNF   ++KC++N N T  G+++ VC PK       S++  ++   K LN+S++
Sbjct: 82  GTDPGIPNFPNLLAKCRLNTNVTRDGLILQVCAPKHHSTPDLSSF--ANVLTKNLNDSKF 139

Query: 142 TIAGVG--SEDNWMVLIISTDTASGDFSSA 169
           T AGVG  S+  W+V +++T+T  G +S++
Sbjct: 140 TGAGVGIDSDGIWLVTVLTTNTPGGSYSNS 169