Miyakogusa Predicted Gene

Lj5g3v1463440.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1463440.1 Non Chatacterized Hit- tr|C5WVC6|C5WVC6_SORBI
Putative uncharacterized protein Sb01g016980
OS=Sorghu,41.96,4e-19,seg,NULL,gene.g61759.t1.1
         (139 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05210.1 | Symbols: ERCC1, UVR7 | nucleotide repair protein, ...   114   2e-26

>AT3G05210.1 | Symbols: ERCC1, UVR7 | nucleotide repair protein,
           putative | chr3:1479591-1481823 FORWARD LENGTH=410
          Length = 410

 Score =  114 bits (284), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/143 (48%), Positives = 89/143 (62%), Gaps = 33/143 (23%)

Query: 1   MDTDYLSRLTHALTTVRHVNKTDVVTLGTTFG-----------------------VKRLF 37
           MDTDYLSRL H+LT++RHVNK+DVVTLG+TFG                       VKRL+
Sbjct: 252 MDTDYLSRLNHSLTSIRHVNKSDVVTLGSTFGSLAHIIDASMEDLARCPGIGERKVKRLY 311

Query: 38  DTFHEPFKRVESSRQAVPETSAQNKPASPD-PLMRNNAESSSLIKDKD-VEDVSKRRKE- 94
           DTFHEPFKR  SS  +V E      P  P+ P+ ++      + +D+D VED  KR+K+ 
Sbjct: 312 DTFHEPFKRATSSYPSVVE------PPIPEAPVEKDVNSEEPVEEDEDFVEDSRKRKKKE 365

Query: 95  -EPELTVKSALSAAFAKYSDRVG 116
            EPE TVK+ALSA FA+YSDR+ 
Sbjct: 366 PEPEKTVKTALSAVFARYSDRLS 388