Miyakogusa Predicted Gene

Lj5g3v1452230.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1452230.1 tr|C1EBR6|C1EBR6_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17) GN=MICPUN_61164
,32.58,0.000000000007,Mog1p/PsbP-like,Mog1/PsbP/DUF1795,
alpha/beta/alpha sandwich; no description,Mog1/PsbP,
alpha/beta/a,CUFF.55272.1
         (241 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27390.1 | Symbols:  | Mog1/PsbP/DUF1795-like photosystem II ...   268   3e-72

>AT5G27390.1 | Symbols:  | Mog1/PsbP/DUF1795-like photosystem II
           reaction center PsbP family protein |
           chr5:9674634-9676118 REVERSE LENGTH=241
          Length = 241

 Score =  268 bits (685), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 136/242 (56%), Positives = 179/242 (73%), Gaps = 2/242 (0%)

Query: 1   MAILLSNLAISNPKPFFSITSKPITCATNLTSKRNLLLQTSLLC-VTIGLSPQLPAALSS 59
           MAILL +L++  P P      KP   +++ T +R+++L+T+ LC V+     Q+P +L+ 
Sbjct: 1   MAILLHSLSLHPPNPKPQNPYKPKILSSSATFRRDVVLRTASLCFVSFIFQNQIPESLAD 60

Query: 60  PQNPPSKSLLSSIENTKSWYQFSGDGFAIRVPPEFEDITEPEDLNAGLTLYGDRAKTPPF 119
           P    +K L   I NTKSW+Q+ G GFAIRVPP+FED+ EPED +AGL+LYGD+AK   F
Sbjct: 61  PLKS-TKPLRLGIANTKSWFQYFGSGFAIRVPPDFEDVNEPEDYSAGLSLYGDKAKPQTF 119

Query: 120 AAQFASSDRNEVLSVVTKPTNQLKITFLEAKDITDLGSLREAAKIFVPGEASLYSARAIK 179
           AA+F + D +EVLSVV +P+NQLKITFLEAKDI+DLGSL+ AA++FVPG A++YSAR IK
Sbjct: 120 AARFQTPDGSEVLSVVIRPSNQLKITFLEAKDISDLGSLKAAARLFVPGAATIYSARTIK 179

Query: 180 VKEVDGFRNYYFYEFGNDQLHIALMAGVSGGKAIIAGATASQSKWDIDGVRLRSAAVSLK 239
           VKE +G RNYYFYEFG D+  IAL+A V+ GK  IAGA A +SKW  D ++LRSAA+S  
Sbjct: 180 VKEEEGLRNYYFYEFGRDEERIALVASVNRGKVYIAGAAAPESKWKDDELKLRSAAISFT 239

Query: 240 IL 241
           IL
Sbjct: 240 IL 241