Miyakogusa Predicted Gene

Lj5g3v1452220.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1452220.1 tr|I4H6M4|I4H6M4_MICAE Similar to
tr|P74145|P74145 OS=Microcystis aeruginosa PCC 9807
GN=MICAF_30700,33.51,7e-19,Repair_PSII,TPM domain;
seg,NULL,CUFF.55273.1
         (298 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G54780.1 | Symbols: TLP18.3 | thylakoid lumen 18.3 kDa protei...   343   9e-95

>AT1G54780.1 | Symbols: TLP18.3 | thylakoid lumen 18.3 kDa protein |
           chr1:20439533-20440953 FORWARD LENGTH=285
          Length = 285

 Score =  343 bits (879), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 181/257 (70%), Positives = 211/257 (82%), Gaps = 8/257 (3%)

Query: 47  SLRKNQTLSLKPSLASSGT-----SWLSHAQQGLAALAITLALNFSPIFLSGNALASEFD 101
           SL K  T S    L++  T     +WL  A+QGLAALA++L L FSP+   G ALASEF+
Sbjct: 32  SLSKPTTFSGPKHLSTRFTKPESRNWLIDAKQGLAALALSLTLTFSPV---GTALASEFN 88

Query: 102 VLNEVPAKDSYVVDDAGVLSRVTRSDLKGLLSDLESRKKFHINFITVRKLTSKADAFEYA 161
           +LN+ P K++YVVDDAGVLSRVT+SDLK LLSDLE RKK  +NFITVRKLTSKADAFEYA
Sbjct: 89  ILNDGPPKETYVVDDAGVLSRVTKSDLKKLLSDLEYRKKLRLNFITVRKLTSKADAFEYA 148

Query: 162 DQVLERWYPSVEEGNDKGIVVLVTSQKEGAVTGGPAFVQAVGENILDATVAENLPVLATD 221
           DQVLE+WYPS+EEGN+KGIVVL+TSQKEGA+TGGPAF++AVGENILDATV+ENLPVLATD
Sbjct: 149 DQVLEKWYPSIEEGNNKGIVVLITSQKEGAITGGPAFIEAVGENILDATVSENLPVLATD 208

Query: 222 EKYNEAVLSTAKRLVAAIDGLPDPGGPQVKDNKRESNFRTKEETEQKRGQFSXXXXXXXX 281
           EKYNEAV S+AKRLVAAIDG PDPGGP VKD+KRESNF+TKEET++KRGQFS        
Sbjct: 209 EKYNEAVYSSAKRLVAAIDGQPDPGGPTVKDSKRESNFKTKEETDEKRGQFSLVVGGLLV 268

Query: 282 XXXXXPMLQYYAYVAKK 298
                PM QY+AYV++K
Sbjct: 269 IAFVVPMAQYFAYVSRK 285