Miyakogusa Predicted Gene

Lj5g3v1452200.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1452200.1 Non Chatacterized Hit- tr|D8UAB3|D8UAB3_VOLCA
Putative uncharacterized protein OS=Volvox carteri
GN=,35.29,0.000000000001,no description,Membrane transporter,
Tim44-related/Ribosomal protein L45; Tim44,Membrane
transporter,CUFF.55271.1
         (305 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27395.2 | Symbols:  | Mitochondrial inner membrane transloca...   360   e-100
AT5G27395.1 | Symbols:  | Mitochondrial inner membrane transloca...   354   3e-98

>AT5G27395.2 | Symbols:  | Mitochondrial inner membrane translocase
           complex, subunit Tim44-related protein |
           chr5:9671845-9674085 REVERSE LENGTH=296
          Length = 296

 Score =  360 bits (925), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/301 (59%), Positives = 227/301 (75%), Gaps = 8/301 (2%)

Query: 1   MMPLKRFHAVRTLYRSSQIGQDSSSYLLGSCRSYSNALSNGSEGNFKSFHSHLFKGHDGF 60
           M  ++RF  VR+L +++   ++SSS   G  RSY ++L +  E + KS +S L++GH   
Sbjct: 1   MSLVRRFQTVRSLLKTAG-SRESSSLPFGCWRSYHSSLCHVPEAHGKSAYSRLYEGHSV- 58

Query: 61  PLAGGKTLTLRSTMAAELSIFMNDKRMLSTQLKGS-SLSRAVGTQISVSSPGFIYEPYEP 119
                 T  LRSTM AE   FMN+KR  +TQ+K    L +    ++S+ SPGF+YEPY  
Sbjct: 59  -----NTHLLRSTMIAEFLPFMNEKRSATTQVKAPPQLQKTGAVRVSMVSPGFVYEPYAL 113

Query: 120 REKIPFWQRWFTRSGWKRTKQDVILELKSAYAIQKLRKSGYSKSRFYNEAFKMYKEINAL 179
           REKI  W+R FTRSGW+RTK+D I EL+SAYAI KLRK+GYSK+ FY EA ++YK+IN  
Sbjct: 114 REKISIWRRCFTRSGWRRTKEDFIRELRSAYAIAKLRKTGYSKNTFYIEALELYKQINIQ 173

Query: 180 IANGDKKSLRKAVTEKMYSALKNEIKQRETTWNKVYWELIEPVIRIRTLRARLIGVDPKD 239
           +ANG+KK++RK VTE+MYSALKNEIKQRE  W+ VYWE++EPV++IRTL+ARLIG+D  D
Sbjct: 174 MANGEKKTIRKNVTERMYSALKNEIKQREAMWDGVYWEMVEPVVKIRTLQARLIGIDRTD 233

Query: 240 LNKVFVQLTLEITAKQKFEAYDSKGSVVAGDKNKEVLVRDIWVFEKSMFHPGAYWRLCGR 299
           L K F+QLTLE   KQKFEAYD+KG+V AGDKNKEVLVRDIWVFEKS+FH GAYWRLCGR
Sbjct: 234 LKKAFIQLTLEFLTKQKFEAYDAKGNVAAGDKNKEVLVRDIWVFEKSLFHTGAYWRLCGR 293

Query: 300 L 300
           +
Sbjct: 294 I 294


>AT5G27395.1 | Symbols:  | Mitochondrial inner membrane translocase
           complex, subunit Tim44-related protein |
           chr5:9671845-9674085 REVERSE LENGTH=313
          Length = 313

 Score =  354 bits (909), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 179/320 (55%), Positives = 227/320 (70%), Gaps = 29/320 (9%)

Query: 1   MMPLKRFHAVRTLYRSS-------------------QIGQDSSSYLLGSCRSYSNALSNG 41
           M  ++RF  VR+L +++                   QIG D   +  G  RSY ++L + 
Sbjct: 1   MSLVRRFQTVRSLLKTAGSRESSSLPFRNGNEFSLIQIGDD---FRFGCWRSYHSSLCHV 57

Query: 42  SEGNFKSFHSHLFKGHDGFPLAGGKTLTLRSTMAAELSIFMNDKRMLSTQLKGS-SLSRA 100
            E + KS +S L++GH         T  LRSTM AE   FMN+KR  +TQ+K    L + 
Sbjct: 58  PEAHGKSAYSRLYEGHSV------NTHLLRSTMIAEFLPFMNEKRSATTQVKAPPQLQKT 111

Query: 101 VGTQISVSSPGFIYEPYEPREKIPFWQRWFTRSGWKRTKQDVILELKSAYAIQKLRKSGY 160
              ++S+ SPGF+YEPY  REKI  W+R FTRSGW+RTK+D I EL+SAYAI KLRK+GY
Sbjct: 112 GAVRVSMVSPGFVYEPYALREKISIWRRCFTRSGWRRTKEDFIRELRSAYAIAKLRKTGY 171

Query: 161 SKSRFYNEAFKMYKEINALIANGDKKSLRKAVTEKMYSALKNEIKQRETTWNKVYWELIE 220
           SK+ FY EA ++YK+IN  +ANG+KK++RK VTE+MYSALKNEIKQRE  W+ VYWE++E
Sbjct: 172 SKNTFYIEALELYKQINIQMANGEKKTIRKNVTERMYSALKNEIKQREAMWDGVYWEMVE 231

Query: 221 PVIRIRTLRARLIGVDPKDLNKVFVQLTLEITAKQKFEAYDSKGSVVAGDKNKEVLVRDI 280
           PV++IRTL+ARLIG+D  DL K F+QLTLE   KQKFEAYD+KG+V AGDKNKEVLVRDI
Sbjct: 232 PVVKIRTLQARLIGIDRTDLKKAFIQLTLEFLTKQKFEAYDAKGNVAAGDKNKEVLVRDI 291

Query: 281 WVFEKSMFHPGAYWRLCGRL 300
           WVFEKS+FH GAYWRLCGR+
Sbjct: 292 WVFEKSLFHTGAYWRLCGRI 311