Miyakogusa Predicted Gene
- Lj5g3v1427790.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1427790.1 Non Chatacterized Hit- tr|C6T767|C6T767_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.13231 PE,56.04,3e-18,no
description,PapD-like; coiled-coil,NULL; PapD-like,PapD-like;
seg,NULL; VESICLE-ASSOCIATED MEMBRA,CUFF.55246.1
(366 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G08820.2 | Symbols: VAP27-2 | vamp/synaptobrevin-associated p... 126 2e-29
AT1G08820.1 | Symbols: VAP27-2 | vamp/synaptobrevin-associated p... 126 2e-29
AT3G60600.1 | Symbols: VAP27-1, VAP, (AT)VAP, VAP27 | vesicle as... 68 8e-12
AT3G60600.2 | Symbols: VAP27-1 | vesicle associated protein | ch... 67 3e-11
AT3G60600.3 | Symbols: VAP27-1 | vesicle associated protein | ch... 66 3e-11
AT5G47180.2 | Symbols: | Plant VAMP (vesicle-associated membran... 65 8e-11
AT5G47180.1 | Symbols: | Plant VAMP (vesicle-associated membran... 65 8e-11
AT1G51270.2 | Symbols: | structural molecules;transmembrane rec... 65 9e-11
AT2G45140.1 | Symbols: PVA12 | plant VAP homolog 12 | chr2:18611... 65 9e-11
AT1G51270.1 | Symbols: | structural molecules;transmembrane rec... 64 1e-10
AT1G51270.4 | Symbols: | structural molecules;transmembrane rec... 64 1e-10
AT1G51270.3 | Symbols: | structural molecules;transmembrane rec... 64 1e-10
AT4G00170.1 | Symbols: | Plant VAMP (vesicle-associated membran... 61 9e-10
>AT1G08820.2 | Symbols: VAP27-2 | vamp/synaptobrevin-associated
protein 27-2 | chr1:2821810-2824412 REVERSE LENGTH=386
Length = 386
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 109/375 (29%), Positives = 182/375 (48%), Gaps = 67/375 (17%)
Query: 1 MQAQRVAPEDMVCKDKFLIQSTFVPAETTSEDVTSTLFVKDASRYIEENKLKVALISPPD 60
MQA + P DMVCKDKFLIQST V AETT ED+T+++F K ++IEENKL+V L+ P D
Sbjct: 70 MQAFKEPPPDMVCKDKFLIQSTAVSAETTDEDITASMFSKAEGKHIEENKLRVTLVPPSD 129
Query: 61 SPDFSHTSGESKNGLDHEKV---QIYSKDEIQSPEAMVKGNFVDAWDLKKVENNIVHEVK 117
SP+ S + + + + + ++YS+ E +P + E IV E +
Sbjct: 130 SPELSPINTPKQGAVFEDSILKDRLYSQSETLAPP--------------QYEGEIVKEPR 175
Query: 118 LEDDMELKPEHDTVLETINDVGMPEEETGLKVSKDEELNTVKDVXXXXXXXXXXXXVSKD 177
+ ELK + ++ P+ T V E+ T D+ ++K+
Sbjct: 176 MVGHDELK-----AADNAKELKTPKMAT---VDFVEDRYTANDL-KATKDSYDSSRMAKE 226
Query: 178 LDSITVKNAEELKPGKEAEFKVSRDPDLNK---INREEELKPG--KDVELKVSKDLDLNT 232
+++ ++ G+ + + D + K + R++ G D E K+SK+ D+
Sbjct: 227 TGFDPIRSHKDADDGRAIKATTNLDAPMKKAMDLPRDQGFTNGIAVDSEPKISKERDVVQ 286
Query: 233 INSAAELKPEEESELNVSKDLEEFNTVKNVQELKPEKEAGLRVSKGIEELKLMEAIEEMK 292
+ ++++ + L+E VK+++E+ K
Sbjct: 287 L---------QKTDGQNVRGLDELKLVKDIEEM--------------------------K 311
Query: 293 LKLDGLEAKLNESGITISKLTEERRLNNQEAKILQQKLDDLINKG-PRKVQVGFPFLYVC 351
LK+D LE+KL ++ TISKL EER +++Q + LQ +L +L K ++V GFP LYVC
Sbjct: 312 LKVDALESKLKQADSTISKLMEERSISSQHRQSLQHELAELRTKKIVKEVHNGFPLLYVC 371
Query: 352 MVALICVFLGYRLHS 366
+VA I +G+ L +
Sbjct: 372 VVAFIAYVIGHFLRT 386
>AT1G08820.1 | Symbols: VAP27-2 | vamp/synaptobrevin-associated
protein 27-2 | chr1:2821810-2824412 REVERSE LENGTH=386
Length = 386
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 109/375 (29%), Positives = 182/375 (48%), Gaps = 67/375 (17%)
Query: 1 MQAQRVAPEDMVCKDKFLIQSTFVPAETTSEDVTSTLFVKDASRYIEENKLKVALISPPD 60
MQA + P DMVCKDKFLIQST V AETT ED+T+++F K ++IEENKL+V L+ P D
Sbjct: 70 MQAFKEPPPDMVCKDKFLIQSTAVSAETTDEDITASMFSKAEGKHIEENKLRVTLVPPSD 129
Query: 61 SPDFSHTSGESKNGLDHEKV---QIYSKDEIQSPEAMVKGNFVDAWDLKKVENNIVHEVK 117
SP+ S + + + + + ++YS+ E +P + E IV E +
Sbjct: 130 SPELSPINTPKQGAVFEDSILKDRLYSQSETLAPP--------------QYEGEIVKEPR 175
Query: 118 LEDDMELKPEHDTVLETINDVGMPEEETGLKVSKDEELNTVKDVXXXXXXXXXXXXVSKD 177
+ ELK + ++ P+ T V E+ T D+ ++K+
Sbjct: 176 MVGHDELK-----AADNAKELKTPKMAT---VDFVEDRYTANDL-KATKDSYDSSRMAKE 226
Query: 178 LDSITVKNAEELKPGKEAEFKVSRDPDLNK---INREEELKPG--KDVELKVSKDLDLNT 232
+++ ++ G+ + + D + K + R++ G D E K+SK+ D+
Sbjct: 227 TGFDPIRSHKDADDGRAIKATTNLDAPMKKAMDLPRDQGFTNGIAVDSEPKISKERDVVQ 286
Query: 233 INSAAELKPEEESELNVSKDLEEFNTVKNVQELKPEKEAGLRVSKGIEELKLMEAIEEMK 292
+ ++++ + L+E VK+++E+ K
Sbjct: 287 L---------QKTDGQNVRGLDELKLVKDIEEM--------------------------K 311
Query: 293 LKLDGLEAKLNESGITISKLTEERRLNNQEAKILQQKLDDLINKG-PRKVQVGFPFLYVC 351
LK+D LE+KL ++ TISKL EER +++Q + LQ +L +L K ++V GFP LYVC
Sbjct: 312 LKVDALESKLKQADSTISKLMEERSISSQHRQSLQHELAELRTKKIVKEVHNGFPLLYVC 371
Query: 352 MVALICVFLGYRLHS 366
+VA I +G+ L +
Sbjct: 372 VVAFIAYVIGHFLRT 386
>AT3G60600.1 | Symbols: VAP27-1, VAP, (AT)VAP, VAP27 | vesicle
associated protein | chr3:22400537-22402408 FORWARD
LENGTH=256
Length = 256
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 42/70 (60%)
Query: 1 MQAQRVAPEDMVCKDKFLIQSTFVPAETTSEDVTSTLFVKDASRYIEENKLKVALISPPD 60
MQAQ+ AP DM CKDKFL+Q T+++VT +F K+A +EE KL+V ++PP
Sbjct: 87 MQAQKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEETKLRVTYVAPPR 146
Query: 61 SPDFSHTSGE 70
P H E
Sbjct: 147 PPSPVHEGSE 156
>AT3G60600.2 | Symbols: VAP27-1 | vesicle associated protein |
chr3:22400537-22401650 FORWARD LENGTH=217
Length = 217
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 42/70 (60%)
Query: 1 MQAQRVAPEDMVCKDKFLIQSTFVPAETTSEDVTSTLFVKDASRYIEENKLKVALISPPD 60
MQAQ+ AP DM CKDKFL+Q T+++VT +F K+A +EE KL+V ++PP
Sbjct: 87 MQAQKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEETKLRVTYVAPPR 146
Query: 61 SPDFSHTSGE 70
P H E
Sbjct: 147 PPSPVHEGSE 156
>AT3G60600.3 | Symbols: VAP27-1 | vesicle associated protein |
chr3:22400537-22401669 FORWARD LENGTH=230
Length = 230
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 42/70 (60%)
Query: 1 MQAQRVAPEDMVCKDKFLIQSTFVPAETTSEDVTSTLFVKDASRYIEENKLKVALISPPD 60
MQAQ+ AP DM CKDKFL+Q T+++VT +F K+A +EE KL+V ++PP
Sbjct: 87 MQAQKEAPSDMQCKDKFLLQGVIASPGVTAKEVTPEMFSKEAGHRVEETKLRVTYVAPPR 146
Query: 61 SPDFSHTSGE 70
P H E
Sbjct: 147 PPSPVHEGSE 156
>AT5G47180.2 | Symbols: | Plant VAMP (vesicle-associated membrane
protein) family protein | chr5:19161384-19163265 REVERSE
LENGTH=220
Length = 220
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%)
Query: 1 MQAQRVAPEDMVCKDKFLIQSTFVPAETTSEDVTSTLFVKDASRYIEENKLKVALISPPD 60
+QAQR P DM CKDKFL+QST VP T +++ F KD+ + + E KLKV+ I+P
Sbjct: 74 LQAQREYPPDMQCKDKFLLQSTIVPPHTDVDELPQDTFTKDSGKTLTECKLKVSYITPST 133
Query: 61 SPDFSHTSGESKNGLDHEKV 80
+ S + + +G E +
Sbjct: 134 TQRSSESGATNGDGQSSETI 153
>AT5G47180.1 | Symbols: | Plant VAMP (vesicle-associated membrane
protein) family protein | chr5:19161384-19163265 REVERSE
LENGTH=220
Length = 220
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 47/80 (58%)
Query: 1 MQAQRVAPEDMVCKDKFLIQSTFVPAETTSEDVTSTLFVKDASRYIEENKLKVALISPPD 60
+QAQR P DM CKDKFL+QST VP T +++ F KD+ + + E KLKV+ I+P
Sbjct: 74 LQAQREYPPDMQCKDKFLLQSTIVPPHTDVDELPQDTFTKDSGKTLTECKLKVSYITPST 133
Query: 61 SPDFSHTSGESKNGLDHEKV 80
+ S + + +G E +
Sbjct: 134 TQRSSESGATNGDGQSSETI 153
>AT1G51270.2 | Symbols: | structural molecules;transmembrane
receptors;structural molecules | chr1:19007577-19010496
FORWARD LENGTH=531
Length = 531
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 40/62 (64%)
Query: 1 MQAQRVAPEDMVCKDKFLIQSTFVPAETTSEDVTSTLFVKDASRYIEENKLKVALISPPD 60
MQA + AP DM C+DK L Q V ETT++DVTS +F K+A EE +LKV ++PP
Sbjct: 241 MQALKEAPADMQCRDKLLFQCKVVEPETTAKDVTSEMFSKEAGHPAEETRLKVMYVTPPQ 300
Query: 61 SP 62
P
Sbjct: 301 PP 302
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 1 MQAQRVAPEDMVCKDKFLIQSTFVPAETTSEDVTSTLFVKDASRYIEENKLKVALISPP 59
MQA + AP D CKDK L Q V T ++VTS +F K+A +EE K+ ++PP
Sbjct: 71 MQALKEAPADRQCKDKLLFQCKVVEPGTMDKEVTSEMFSKEAGHRVEETIFKIIYVAPP 129
>AT2G45140.1 | Symbols: PVA12 | plant VAP homolog 12 |
chr2:18611029-18612971 FORWARD LENGTH=239
Length = 239
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 39/62 (62%)
Query: 1 MQAQRVAPEDMVCKDKFLIQSTFVPAETTSEDVTSTLFVKDASRYIEENKLKVALISPPD 60
MQAQ+ AP D+ CKDKFL+Q T +DVT +F K+A +EE KL+V ++PP
Sbjct: 70 MQAQKEAPADLQCKDKFLLQCVVASPGATPKDVTHEMFSKEAGHRVEETKLRVVYVAPPR 129
Query: 61 SP 62
P
Sbjct: 130 PP 131
>AT1G51270.1 | Symbols: | structural molecules;transmembrane
receptors;structural molecules | chr1:19007577-19010411
FORWARD LENGTH=571
Length = 571
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 40/62 (64%)
Query: 1 MQAQRVAPEDMVCKDKFLIQSTFVPAETTSEDVTSTLFVKDASRYIEENKLKVALISPPD 60
MQA + AP DM C+DK L Q V ETT++DVTS +F K+A EE +LKV ++PP
Sbjct: 241 MQALKEAPADMQCRDKLLFQCKVVEPETTAKDVTSEMFSKEAGHPAEETRLKVMYVTPPQ 300
Query: 61 SP 62
P
Sbjct: 301 PP 302
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 1 MQAQRVAPEDMVCKDKFLIQSTFVPAETTSEDVTSTLFVKDASRYIEENKLKVALISPP 59
MQA + AP D CKDK L Q V T ++VTS +F K+A +EE K+ ++PP
Sbjct: 71 MQALKEAPADRQCKDKLLFQCKVVEPGTMDKEVTSEMFSKEAGHRVEETIFKIIYVAPP 129
>AT1G51270.4 | Symbols: | structural molecules;transmembrane
receptors;structural molecules | chr1:19007577-19011225
FORWARD LENGTH=467
Length = 467
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 40/62 (64%)
Query: 1 MQAQRVAPEDMVCKDKFLIQSTFVPAETTSEDVTSTLFVKDASRYIEENKLKVALISPPD 60
MQA + AP DM C+DK L Q V ETT++DVTS +F K+A EE +LKV ++PP
Sbjct: 71 MQALKEAPADMQCRDKLLFQCKVVEPETTAKDVTSEMFSKEAGHPAEETRLKVMYVTPPQ 130
Query: 61 SP 62
P
Sbjct: 131 PP 132
>AT1G51270.3 | Symbols: | structural molecules;transmembrane
receptors;structural molecules | chr1:19007577-19011225
FORWARD LENGTH=637
Length = 637
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 40/62 (64%)
Query: 1 MQAQRVAPEDMVCKDKFLIQSTFVPAETTSEDVTSTLFVKDASRYIEENKLKVALISPPD 60
MQA + AP DM C+DK L Q V ETT++DVTS +F K+A EE +LKV ++PP
Sbjct: 241 MQALKEAPADMQCRDKLLFQCKVVEPETTAKDVTSEMFSKEAGHPAEETRLKVMYVTPPQ 300
Query: 61 SP 62
P
Sbjct: 301 PP 302
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 1 MQAQRVAPEDMVCKDKFLIQSTFVPAETTSEDVTSTLFVKDASRYIEENKLKVALISPP 59
MQA + AP D CKDK L Q V T ++VTS +F K+A +EE K+ ++PP
Sbjct: 71 MQALKEAPADRQCKDKLLFQCKVVEPGTMDKEVTSEMFSKEAGHRVEETIFKIIYVAPP 129
>AT4G00170.1 | Symbols: | Plant VAMP (vesicle-associated membrane
protein) family protein | chr4:70732-72085 REVERSE
LENGTH=239
Length = 239
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/63 (52%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 1 MQAQRVAPEDMVCKDKFLIQSTFVPAETTSEDVTSTLFVKDASRYIEENKLKVALI-SPP 59
MQAQ+ AP DM CKDKFL+Q+ V TTS++V + +F K+A R IE+ KL+V I + P
Sbjct: 72 MQAQKEAPLDMQCKDKFLVQTVVVSDGTTSKEVLAEMFNKEAGRVIEDFKLRVVYIPANP 131
Query: 60 DSP 62
SP
Sbjct: 132 PSP 134