Miyakogusa Predicted Gene

Lj5g3v1427770.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1427770.1 tr|B5X2T2|B5X2T2_SALSA Integral membrane protein
GPR175 OS=Salmo salar GN=GP175 PE=2 SV=1,24.6,0.00000009,seg,NULL;
Tmemb_40,Uncharacterised protein family, transmembrane-40; INTEGRAL
MEMBRANE PROTEIN GPR17,CUFF.55287.1
         (299 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05010.1 | Symbols:  | Protein of unknown function, transmemb...   395   e-110
AT5G27210.1 | Symbols:  | Protein of unknown function, transmemb...   369   e-102

>AT3G05010.1 | Symbols:  | Protein of unknown function,
           transmembrane-40 | chr3:1389603-1391462 FORWARD
           LENGTH=300
          Length = 300

 Score =  395 bits (1016), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 188/298 (63%), Positives = 227/298 (76%), Gaps = 4/298 (1%)

Query: 2   VQQSVLAITKQEGSDSSTSAALSAGMFDWVFKCHGFWHNAVLIIASFLFVLYLALQAKQS 61
           + +S   I++    DS+ +     G   WV KCHGF HN VL++AS LFV YLA +AK+S
Sbjct: 7   IAESPFVISRLS-PDSTATGGFIGG---WVGKCHGFLHNTVLVLASILFVAYLAYEAKKS 62

Query: 62  FRKLSHGRSHIIISYYATLWLVSILNLAWCSFQVWECSPGKELAWNLLSLFTSSGMXXXX 121
             KLS+ RS+I+I+YY  LWLVS+LNLAWC  Q WEC+PGKE+ WNLL+LFT+SGM    
Sbjct: 63  LSKLSNRRSYIMIAYYGFLWLVSLLNLAWCCLQAWECTPGKEVIWNLLTLFTTSGMLFLE 122

Query: 122 XXXXXXXXQGNNASGLEALTRTFGISGVIVGFDILLKGIYLFAFGIPLFIDTDHSIPHVK 181
                   QGN ASG EALTRTF ISG+++G D+LLK IYLF FG+PLFID +  I   K
Sbjct: 123 VSLVAFLFQGNYASGAEALTRTFLISGLVIGLDLLLKAIYLFGFGVPLFIDNNEHIHKFK 182

Query: 182 WNLWVVHKLVLTLVYGLILFMYHSRWRERLPARPAFYKYVTVMFILNAIALFACGLTGSG 241
           W LWV+HKL+L  +YG+I FMY+S+WRERLPARPAFYKY+TVM  LN ++LFAC LT +G
Sbjct: 183 WGLWVIHKLLLAGIYGMIFFMYNSKWRERLPARPAFYKYITVMLALNGLSLFACALTANG 242

Query: 242 AAFGFWFYRVTVVCYHAFYLPLLYITFLADFFQEEDLNLENVYYSEMKDAGFFESDWN 299
           A FG W Y +T VCYHAFYLPLLY+TFLADFFQEEDLNLENVYYSEMKDAGFF++DW 
Sbjct: 243 AHFGLWLYGITSVCYHAFYLPLLYVTFLADFFQEEDLNLENVYYSEMKDAGFFDADWE 300


>AT5G27210.1 | Symbols:  | Protein of unknown function,
           transmembrane-40 | chr5:9572333-9574075 REVERSE
           LENGTH=297
          Length = 297

 Score =  369 bits (947), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 175/276 (63%), Positives = 208/276 (75%)

Query: 24  SAGMFDWVFKCHGFWHNAVLIIASFLFVLYLALQAKQSFRKLSHGRSHIIISYYATLWLV 83
           +A  + WV KCHGF HN VL+ AS  FV YLA +AK+S  KLS+ RS+I+I+YY  LWLV
Sbjct: 22  TANGYRWVDKCHGFLHNTVLVAASLFFVAYLAYEAKKSLSKLSNRRSYIMIAYYGCLWLV 81

Query: 84  SILNLAWCSFQVWECSPGKELAWNLLSLFTSSGMXXXXXXXXXXXXQGNNASGLEALTRT 143
           S+LNLAWC  Q WEC+PGKE+ WNLL+LFT+SGM            QGN ASG EALTRT
Sbjct: 82  SLLNLAWCCLQGWECTPGKEVVWNLLTLFTTSGMLFLEVSLVAFLFQGNYASGAEALTRT 141

Query: 144 FGISGVIVGFDILLKGIYLFAFGIPLFIDTDHSIPHVKWNLWVVHKLVLTLVYGLILFMY 203
           F ISG IV  D+LLK I+LF FG+PLFID + +    KW LW++HKL+LT VYG++  MY
Sbjct: 142 FLISGFIVALDLLLKAIFLFGFGVPLFIDNNENGKTFKWGLWIIHKLLLTGVYGMVFLMY 201

Query: 204 HSRWRERLPARPAFYKYVTVMFILNAIALFACGLTGSGAAFGFWFYRVTVVCYHAFYLPL 263
           +SRWRE+LPARPAFY Y+ +MF L ++ L A   T + A FGFW Y +  VCYHA YLPL
Sbjct: 202 NSRWREKLPARPAFYNYIIIMFALYSLYLVASAFTANNAHFGFWLYGIMSVCYHALYLPL 261

Query: 264 LYITFLADFFQEEDLNLENVYYSEMKDAGFFESDWN 299
           LYITFLADFFQEEDLNLENVYYSEMKDAGFF+SDW 
Sbjct: 262 LYITFLADFFQEEDLNLENVYYSEMKDAGFFDSDWE 297