Miyakogusa Predicted Gene

Lj5g3v1425440.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1425440.1 CUFF.55239.1
         (145 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G13882.1 | Symbols:  | Ribosomal protein L34 | chr3:4574600-4...   128   1e-30
AT3G13882.2 | Symbols:  | Ribosomal protein L34 | chr3:4574521-4...   102   7e-23

>AT3G13882.1 | Symbols:  | Ribosomal protein L34 |
           chr3:4574600-4575852 FORWARD LENGTH=147
          Length = 147

 Score =  128 bits (322), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/158 (53%), Positives = 101/158 (63%), Gaps = 24/158 (15%)

Query: 1   MASKTLLRSGSTLLNRF----SNSKSXXXXXXXXXXXXXQLFQIPPL---------SKLP 47
           MA+KTL+RSG++L+NRF    + +               Q  +IPP          S L 
Sbjct: 1   MAAKTLIRSGASLMNRFLTKPTTNIVQNNLRSSFQYIAPQGQEIPPYFFPSLSNLQSSLI 60

Query: 48  SFPQNDADSPSKLLASQGFLYPCGLPDLSFFLPQATVDVSYECPSNEEDPMLLFPKRSYQ 107
           S P ND  S  +L   +GFLYP GLP L FFLP+  VD     PS+E  P+LLFPKR++Q
Sbjct: 61  SRP-NDTASLQEL-NERGFLYPSGLPSLEFFLPE--VD-----PSSE--PLLLFPKRTFQ 109

Query: 108 PSTLRRKRVHGFFARKATKGGRRVIARRIAKGRSRITA 145
           PST+RRKR HGFFARKATKGGRRVIARRIAKGR R+TA
Sbjct: 110 PSTIRRKRNHGFFARKATKGGRRVIARRIAKGRHRVTA 147


>AT3G13882.2 | Symbols:  | Ribosomal protein L34 |
           chr3:4574521-4575852 FORWARD LENGTH=201
          Length = 201

 Score =  102 bits (255), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 63/134 (47%), Positives = 73/134 (54%), Gaps = 43/134 (32%)

Query: 52  NDADSPSKLLASQGFLYPCGLPDLSFFLPQATVDVSYEC--------------------- 90
           ND  S  +L   +GFLYP GLP L FFLP+     S +                      
Sbjct: 71  NDTASLQEL-NERGFLYPSGLPSLEFFLPEVYAMQSLDARESSALYCSLALRLLVSAKLY 129

Query: 91  -------------------PSNEEDPMLLFPKRSYQPSTLRRKRVHGFFARKATKGGRRV 131
                              PS+E  P+LLFPKR++QPST+RRKR HGFFARKATKGGRRV
Sbjct: 130 IFAARWYLSNVFVFGNVVDPSSE--PLLLFPKRTFQPSTIRRKRNHGFFARKATKGGRRV 187

Query: 132 IARRIAKGRSRITA 145
           IARRIAKGR R+TA
Sbjct: 188 IARRIAKGRHRVTA 201