Miyakogusa Predicted Gene

Lj5g3v1414150.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1414150.1 Non Chatacterized Hit- tr|A9NW78|A9NW78_PICSI
Putative uncharacterized protein OS=Picea sitchensis
P,35.9,4e-19,seg,NULL,CUFF.55222.1
         (209 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G14746.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: EGF-like (...   114   5e-26

>AT4G14746.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: EGF-like
           (InterPro:IPR006210); Has 259 Blast hits to 234 proteins
           in 55 species: Archae - 0; Bacteria - 0; Metazoa - 184;
           Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes -
           6 (source: NCBI BLink). | chr4:8462720-8464326 REVERSE
           LENGTH=212
          Length = 212

 Score =  114 bits (285), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 57/139 (41%), Positives = 74/139 (53%), Gaps = 8/139 (5%)

Query: 30  ILDKVCEEVECGKGKCVVNTTYPLNFICECESGWKRTRDEDSDKYGTSFLPCVIPQCSLN 89
           + D +C+EVECGKGKC   +     + CECE GWK+            FLPC+ P C+ +
Sbjct: 34  VYDNICKEVECGKGKCKAPSNTTFMYECECEDGWKQFDQH------LKFLPCITPNCTFD 87

Query: 90  YGCQPAPPPVPEKSLPHN--LSAFDPCYWAYCGEGKCITNRTYTYGCECSPNFYNLLNIS 147
             C  A  P   K  P +   S FDPC W  CG G C ++  + Y C C   + NL+NI+
Sbjct: 88  LTCGEAASPAQPKPPPKDNITSFFDPCQWMDCGGGLCNSSMPFQYSCNCREGYSNLMNIT 147

Query: 148 VFPCYSECTLGSDCSRLGI 166
            FPC  +C LG DC  LGI
Sbjct: 148 TFPCLKQCALGMDCLNLGI 166