Miyakogusa Predicted Gene

Lj5g3v1414130.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1414130.1 tr|I0YMG8|I0YMG8_9CHLO DUF1000-domain-containing
protein OS=Coccomyxa subellipsoidea C-169 PE=4
SV=1,66.15,4e-18,THIOREDOXIN - RELATED,NULL;
THIOREDOXIN-RELATED,Thioredoxin; Galactose-binding
domain-like,Galactose,CUFF.55221.1
         (80 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G04780.1 | Symbols:  | Protein of unknown function (DUF1000) ...   141   1e-34

>AT3G04780.1 | Symbols:  | Protein of unknown function (DUF1000) |
          chr3:1311447-1313013 REVERSE LENGTH=176
          Length = 176

 Score =  141 bits (355), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 66/80 (82%), Positives = 72/80 (90%)

Query: 1  MSGESASAIQKGQVDLLDFIDWSSVECLNQSSTHSLPNAIKQGYREDDGLHLESDADEQL 60
          MS ESAS I KGQVDLLDFIDWS VECLNQSS+HSLPNA+KQGYRED+GL+LESDADEQL
Sbjct: 1  MSAESASQIPKGQVDLLDFIDWSGVECLNQSSSHSLPNALKQGYREDEGLNLESDADEQL 60

Query: 61 LLYIPFTQVIKLSAILIKGP 80
          L+YIPF QVIKL +  IKGP
Sbjct: 61 LIYIPFNQVIKLHSFAIKGP 80