Miyakogusa Predicted Gene

Lj5g3v1381580.2
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1381580.2 tr|Q9AT24|Q9AT24_PEA Histone H1 (Fragment)
OS=Pisum sativum GN=His1 PE=3 SV=1,64.94,4e-19,seg,NULL;
Linker_histone,Histone H1/H5; "Winged helix" DNA-binding domain,NULL;
HISTONEH5,Histone H5,CUFF.55202.2
         (197 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G30620.1 | Symbols:  | winged-helix DNA-binding transcription...    96   2e-20
AT2G30620.2 | Symbols:  | winged-helix DNA-binding transcription...    96   2e-20
AT1G06760.1 | Symbols:  | winged-helix DNA-binding transcription...    87   8e-18
AT2G18050.1 | Symbols: HIS1-3 | histone H1-3 | chr2:7846095-7846...    76   2e-14
AT2G18050.2 | Symbols: HIS1-3 | histone H1-3 | chr2:7846254-7846...    66   2e-11
AT3G18035.1 | Symbols: HON4 | winged-helix DNA-binding transcrip...    54   5e-08
AT1G14900.1 | Symbols: HMGA | high mobility group A | chr1:51386...    53   2e-07
AT1G54260.1 | Symbols:  | winged-helix DNA-binding transcription...    52   3e-07
AT1G48620.1 | Symbols: HON5 | high mobility group A5 | chr1:1797...    50   7e-07
AT1G49950.1 | Symbols: TRB1, ATTRB1 | telomere repeat binding fa...    50   1e-06
AT1G49950.2 | Symbols: TRB1, ATTRB1 | telomere repeat binding fa...    50   1e-06
AT1G49950.3 | Symbols: TRB1, ATTRB1 | telomere repeat binding fa...    50   1e-06
AT1G72740.2 | Symbols:  | Homeodomain-like/winged-helix DNA-bind...    50   1e-06

>AT2G30620.1 | Symbols:  | winged-helix DNA-binding transcription
           factor family protein | chr2:13045360-13046267 FORWARD
           LENGTH=273
          Length = 273

 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 56/68 (82%)

Query: 16  SHPPFAEMITEAIASLKERTGSSQHAITKFIEGKHKELPPTFRKLILHQLKKSVAAGKLV 75
           SHP + EMI +AI +LKERTGSSQ+AI KFIE KHK LPPTFRKL+L  LK+ VA+ KLV
Sbjct: 61  SHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLV 120

Query: 76  KVKNSFKL 83
           KVK SFK+
Sbjct: 121 KVKASFKI 128


>AT2G30620.2 | Symbols:  | winged-helix DNA-binding transcription
           factor family protein | chr2:13045360-13046267 FORWARD
           LENGTH=202
          Length = 202

 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 48/68 (70%), Positives = 56/68 (82%)

Query: 16  SHPPFAEMITEAIASLKERTGSSQHAITKFIEGKHKELPPTFRKLILHQLKKSVAAGKLV 75
           SHP + EMI +AI +LKERTGSSQ+AI KFIE KHK LPPTFRKL+L  LK+ VA+ KLV
Sbjct: 61  SHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHKSLPPTFRKLLLVNLKRLVASEKLV 120

Query: 76  KVKNSFKL 83
           KVK SFK+
Sbjct: 121 KVKASFKI 128


>AT1G06760.1 | Symbols:  | winged-helix DNA-binding transcription
           factor family protein | chr1:2076687-2077616 REVERSE
           LENGTH=274
          Length = 274

 Score = 86.7 bits (213), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 50/68 (73%), Positives = 57/68 (83%)

Query: 16  SHPPFAEMITEAIASLKERTGSSQHAITKFIEGKHKELPPTFRKLILHQLKKSVAAGKLV 75
           SHP + EMI +AI +LKERTGSSQ+AI KFIE K KELPPTFRKL+L  LK+ VA+GKLV
Sbjct: 61  SHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRKELPPTFRKLLLLNLKRLVASGKLV 120

Query: 76  KVKNSFKL 83
           KVK SFKL
Sbjct: 121 KVKASFKL 128


>AT2G18050.1 | Symbols: HIS1-3 | histone H1-3 |
          chr2:7846095-7846670 FORWARD LENGTH=167
          Length = 167

 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/69 (57%), Positives = 51/69 (73%), Gaps = 1/69 (1%)

Query: 16 SHPPFAEMITEAIASLKERTGSSQHAITKFIEGKHKE-LPPTFRKLILHQLKKSVAAGKL 74
          +HPP+ +MI EA+  LKE+ GSS +AI K IE KHK  LP +FRK +  QLK SVA GKL
Sbjct: 23 THPPYFQMIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPESFRKTLSLQLKNSVAKGKL 82

Query: 75 VKVKNSFKL 83
          VK++ S+KL
Sbjct: 83 VKIRASYKL 91


>AT2G18050.2 | Symbols: HIS1-3 | histone H1-3 |
          chr2:7846254-7846670 FORWARD LENGTH=138
          Length = 138

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/62 (59%), Positives = 45/62 (72%), Gaps = 1/62 (1%)

Query: 23 MITEAIASLKERTGSSQHAITKFIEGKHKEL-PPTFRKLILHQLKKSVAAGKLVKVKNSF 81
          MI EA+  LKE+ GSS +AI K IE KHK L P +FRK +  QLK SVA GKLVK++ S+
Sbjct: 1  MIKEALMVLKEKNGSSPYAIAKKIEEKHKSLLPESFRKTLSLQLKNSVAKGKLVKIRASY 60

Query: 82 KL 83
          KL
Sbjct: 61 KL 62


>AT3G18035.1 | Symbols: HON4 | winged-helix DNA-binding
           transcription factor family protein |
           chr3:6169384-6171558 REVERSE LENGTH=480
          Length = 480

 Score = 54.3 bits (129), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 42/69 (60%)

Query: 15  LSHPPFAEMITEAIASLKERTGSSQHAITKFIEGKHKELPPTFRKLILHQLKKSVAAGKL 74
           + HPP++EMI  AIA+L E  GSS+ AI+++IE  +  L      L+ H LK    +G L
Sbjct: 63  MPHPPYSEMICAAIAALNEPDGSSKMAISRYIERCYTGLTSAHAALLTHHLKTLKTSGVL 122

Query: 75  VKVKNSFKL 83
             VK S+K+
Sbjct: 123 SMVKKSYKI 131


>AT1G14900.1 | Symbols: HMGA | high mobility group A |
          chr1:5138665-5139353 REVERSE LENGTH=204
          Length = 204

 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 39/64 (60%)

Query: 18 PPFAEMITEAIASLKERTGSSQHAITKFIEGKHKELPPTFRKLILHQLKKSVAAGKLVKV 77
          PP+ +MI EAI SL ++ G ++  I K IE   + LPP+   L+ + L +    G+L+ V
Sbjct: 24 PPYPQMIMEAIESLNDKNGCNKTTIAKHIESTQQTLPPSHMTLLSYHLNQMKKTGQLIMV 83

Query: 78 KNSF 81
          KN++
Sbjct: 84 KNNY 87


>AT1G54260.1 | Symbols:  | winged-helix DNA-binding transcription
          factor family protein | chr1:20257340-20259176 FORWARD
          LENGTH=197
          Length = 197

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 42/64 (65%), Gaps = 1/64 (1%)

Query: 20 FAEMITEAIASLKERTGSSQHAITKFIEGKHKELPPTFRKLILHQLKKSVAAGKLVKVKN 79
          +  M+ EA++++ +  GS+   I +FIEG+H E+P  F+KL+ + L   V+  KL KV+N
Sbjct: 7  YDAMVFEAVSTINDENGSNLKEILRFIEGQH-EVPQNFKKLLSYSLGILVSQDKLKKVRN 65

Query: 80 SFKL 83
           +K+
Sbjct: 66 RYKI 69


>AT1G48620.1 | Symbols: HON5 | high mobility group A5 |
           chr1:17974148-17976301 REVERSE LENGTH=479
          Length = 479

 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 40/64 (62%)

Query: 20  FAEMITEAIASLKERTGSSQHAITKFIEGKHKELPPTFRKLILHQLKKSVAAGKLVKVKN 79
           +++MI  AIA+L E  GSS+ AI+++IE  +  +P     L+ H LK    +G LV VK 
Sbjct: 78  YSDMICTAIAALNEPDGSSKQAISRYIERIYTGIPTAHGALLTHHLKTLKTSGILVMVKK 137

Query: 80  SFKL 83
           S+KL
Sbjct: 138 SYKL 141


>AT1G49950.1 | Symbols: TRB1, ATTRB1 | telomere repeat binding
           factor 1 | chr1:18494439-18496713 REVERSE LENGTH=300
          Length = 300

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 8/75 (10%)

Query: 16  SHPP-------FAEMITEAIASLKERTGSSQHAITKFIEGKHKELPPTFRKLILHQLKKS 68
           S+PP          +I EAIA+LKE  G ++  I  +IE ++   PP F++L+  +LK  
Sbjct: 110 SNPPPRRPNVRLDSLIMEAIATLKEPGGCNKTTIGAYIEDQY-HAPPDFKRLLSTKLKYL 168

Query: 69  VAAGKLVKVKNSFKL 83
            + GKLVKVK  +++
Sbjct: 169 TSCGKLVKVKRKYRI 183


>AT1G49950.2 | Symbols: TRB1, ATTRB1 | telomere repeat binding
           factor 1 | chr1:18494439-18496713 REVERSE LENGTH=300
          Length = 300

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 8/75 (10%)

Query: 16  SHPP-------FAEMITEAIASLKERTGSSQHAITKFIEGKHKELPPTFRKLILHQLKKS 68
           S+PP          +I EAIA+LKE  G ++  I  +IE ++   PP F++L+  +LK  
Sbjct: 110 SNPPPRRPNVRLDSLIMEAIATLKEPGGCNKTTIGAYIEDQY-HAPPDFKRLLSTKLKYL 168

Query: 69  VAAGKLVKVKNSFKL 83
            + GKLVKVK  +++
Sbjct: 169 TSCGKLVKVKRKYRI 183


>AT1G49950.3 | Symbols: TRB1, ATTRB1 | telomere repeat binding
           factor 1 | chr1:18494439-18496713 REVERSE LENGTH=300
          Length = 300

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/75 (37%), Positives = 44/75 (58%), Gaps = 8/75 (10%)

Query: 16  SHPP-------FAEMITEAIASLKERTGSSQHAITKFIEGKHKELPPTFRKLILHQLKKS 68
           S+PP          +I EAIA+LKE  G ++  I  +IE ++   PP F++L+  +LK  
Sbjct: 110 SNPPPRRPNVRLDSLIMEAIATLKEPGGCNKTTIGAYIEDQY-HAPPDFKRLLSTKLKYL 168

Query: 69  VAAGKLVKVKNSFKL 83
            + GKLVKVK  +++
Sbjct: 169 TSCGKLVKVKRKYRI 183


>AT1G72740.2 | Symbols:  | Homeodomain-like/winged-helix DNA-binding
           family protein | chr1:27380499-27382687 REVERSE
           LENGTH=281
          Length = 281

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 43/66 (65%), Gaps = 1/66 (1%)

Query: 18  PPFAEMITEAIASLKERTGSSQHAITKFIEGKHKELPPTFRKLILHQLKKSVAAGKLVKV 77
           P +  +I EA+++L +  GS   +I  FIE +H E+PP FR+++  +L++  A  KL K+
Sbjct: 121 PRYDGVIFEALSALADGNGSDVSSIYHFIEPRH-EVPPNFRRILSTRLRRLAAQSKLEKI 179

Query: 78  KNSFKL 83
           +N +K+
Sbjct: 180 QNFYKI 185