Miyakogusa Predicted Gene

Lj5g3v1360520.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1360520.1 Non Chatacterized Hit- tr|D7KQA7|D7KQA7_ARALL
Putative uncharacterized protein OS=Arabidopsis
lyrata,62.5,9e-19,SSXT,SSXT; coiled-coil,NULL; SYNOVIAL SARCOMA
ASSOCIATED SS18 PROTEIN,SSXT;
seg,NULL,NODE_47957_length_1049_cov_14.057198.path2.1
         (203 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G28640.1 | Symbols: AN3, GIF, GIF1, ATGIF1 | SSXT family prot...   110   5e-25
AT4G00850.1 | Symbols: GIF3 | GRF1-interacting factor 3 | chr4:3...    86   1e-17
AT1G01160.1 | Symbols: GIF2 | GRF1-interacting factor 2 | chr1:7...    84   7e-17
AT1G01160.2 | Symbols: GIF2 | GRF1-interacting factor 2 | chr1:7...    70   8e-13

>AT5G28640.1 | Symbols: AN3, GIF, GIF1, ATGIF1 | SSXT family
          protein | chr5:10647831-10649620 REVERSE LENGTH=210
          Length = 210

 Score =  110 bits (276), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 55/60 (91%), Positives = 57/60 (95%), Gaps = 1/60 (1%)

Query: 13 ASYYTNNNVTSDHIQQYLDENKSLILKIVESQNSGKLSECAENQSRLQRNLMYLAAIADS 72
          A YY +N VTSDHIQQYLDENKSLILKIVESQNSGKLSECAENQ+RLQRNLMYLAAIADS
Sbjct: 13 AGYYPSN-VTSDHIQQYLDENKSLILKIVESQNSGKLSECAENQARLQRNLMYLAAIADS 71


>AT4G00850.1 | Symbols: GIF3 | GRF1-interacting factor 3 |
          chr4:357675-358928 FORWARD LENGTH=223
          Length = 223

 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 50/60 (83%)

Query: 13 ASYYTNNNVTSDHIQQYLDENKSLILKIVESQNSGKLSECAENQSRLQRNLMYLAAIADS 72
           S+   NN+T++ IQ+YLDENK LI+ I+E+QN GKL+ECA+ Q+ LQ+NLMYLAAIAD+
Sbjct: 13 PSFPPTNNITTEQIQKYLDENKKLIMAILENQNLGKLAECAQYQALLQKNLMYLAAIADA 72


>AT1G01160.1 | Symbols: GIF2 | GRF1-interacting factor 2 |
          chr1:72583-73883 FORWARD LENGTH=195
          Length = 195

 Score = 84.0 bits (206), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 37/60 (61%), Positives = 49/60 (81%)

Query: 13 ASYYTNNNVTSDHIQQYLDENKSLILKIVESQNSGKLSECAENQSRLQRNLMYLAAIADS 72
           S    NN+T++ IQ+YLDENK LI+ I+E+QN GKL+ECA+ Q+ LQ+NLMYLAAIAD+
Sbjct: 14 PSIPPANNITTEQIQKYLDENKKLIMAIMENQNLGKLAECAQYQALLQKNLMYLAAIADA 73


>AT1G01160.2 | Symbols: GIF2 | GRF1-interacting factor 2 |
           chr1:72583-73883 FORWARD LENGTH=229
          Length = 229

 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 31/44 (70%), Positives = 39/44 (88%)

Query: 29  YLDENKSLILKIVESQNSGKLSECAENQSRLQRNLMYLAAIADS 72
           YLDENK LI+ I+E+QN GKL+ECA+ Q+ LQ+NLMYLAAIAD+
Sbjct: 64  YLDENKKLIMAIMENQNLGKLAECAQYQALLQKNLMYLAAIADA 107