Miyakogusa Predicted Gene
- Lj5g3v1358160.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj5g3v1358160.1 tr|G7I6U2|G7I6U2_MEDTR Transcriptional regulator
ATRX OS=Medicago truncatula GN=MTR_1g080420 PE=4 SV,67.13,0,seg,NULL;
HELICASE_ATP_BIND_1,Helicase, superfamily 1/2, ATP-binding domain;
coiled-coil,NULL; P-loo,CUFF.55193.1
(833 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G08600.2 | Symbols: ATRX | P-loop containing nucleoside triph... 482 e-136
AT1G08600.4 | Symbols: ATRX | P-loop containing nucleoside triph... 482 e-136
AT1G08600.3 | Symbols: ATRX | P-loop containing nucleoside triph... 482 e-136
AT1G08600.1 | Symbols: ATRX, CHR20 | P-loop containing nucleosid... 424 e-118
AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 ... 122 9e-28
AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 | chr3:6652799-6... 122 9e-28
AT2G21450.1 | Symbols: CHR34 | chromatin remodeling 34 | chr2:91... 119 6e-27
AT2G16390.1 | Symbols: DRD1, CHR35, DMS1 | SNF2 domain-containin... 117 3e-26
AT3G42670.1 | Symbols: CHR38, CLSY | chromatin remodeling 38 | c... 115 2e-25
AT5G20420.1 | Symbols: CHR42 | chromatin remodeling 42 | chr5:68... 113 5e-25
AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORW... 105 1e-22
AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containi... 99 1e-20
AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 | chr5:25... 96 1e-19
AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDD... 92 1e-18
AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putat... 92 1e-18
AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putat... 92 2e-18
AT5G19310.1 | Symbols: | Homeotic gene regulator | chr5:6498906... 91 3e-18
AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 | chr2:8129... 91 5e-18
AT1G05490.1 | Symbols: chr31 | chromatin remodeling 31 | chr1:16... 90 6e-18
AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 89 1e-17
AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 89 1e-17
AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 89 1e-17
AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA ... 87 7e-17
AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic ac... 87 7e-17
AT3G24340.1 | Symbols: chr40 | chromatin remodeling 40 | chr3:88... 86 2e-16
AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin re... 84 4e-16
AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 | c... 81 3e-15
AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 | c... 81 3e-15
AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 | chr... 81 4e-15
AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containi... 79 2e-14
AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator | chr3:... 79 2e-14
AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 78 2e-14
AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 78 2e-14
AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 78 2e-14
AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog | chr3:21... 75 2e-13
AT1G02670.1 | Symbols: | P-loop containing nucleoside triphosph... 61 4e-09
AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein | chr5:75... 60 7e-09
AT1G48310.1 | Symbols: CHR18, CHA18 | chromatin remodeling facto... 55 2e-07
>AT1G08600.2 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 482 bits (1240), Expect = e-136, Method: Compositional matrix adjust.
Identities = 236/322 (73%), Positives = 257/322 (79%), Gaps = 2/322 (0%)
Query: 501 AKINVTXXXXXXXXXXXXXXLDDAELGXXXXXXXXXXXXRQERLKSLRGQFSVSSIEMNS 560
A +NVT +DDAELG RQERL+SL QFS ++S
Sbjct: 616 ADVNVTISSKKKSKKKIRRIIDDAELGKDTRTKIAIEKARQERLRSL--QFSARYKTISS 673
Query: 561 GGCNGNLTEGASLEILGDAQAGYIVNVVREIGEEAVRIPASISAKLKAHQVTGIRFMWEN 620
G ++ EGA +E+LGDA +GYIVNVVREIGEEAVR+P SISAKLK HQVTGIRFMWEN
Sbjct: 674 MGDVKSIPEGAEVEVLGDAHSGYIVNVVREIGEEAVRVPRSISAKLKVHQVTGIRFMWEN 733
Query: 621 IIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVDLGLRTALIVTPVNVLHN 680
IIQSI +VKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMR VDLGL+TALIVTPVNVLHN
Sbjct: 734 IIQSISRVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLKTALIVTPVNVLHN 793
Query: 681 WRREFIKWAPSELTPLRIFMLEDVPRDRRAHLLAKWRAKGGVFLIGYSAFRNLSFGKNVK 740
WR EF KW PSE+ PLRIFML DV R+RR LL KWR KGGVFL+GY+ FRNLS G+ VK
Sbjct: 794 WRSEFEKWMPSEVKPLRIFMLGDVSRERRFDLLTKWRKKGGVFLMGYTNFRNLSLGRGVK 853
Query: 741 DRHMARETCRALQDGPDILVCDEAHMIKNTKADVTQALKQVKCQRRIALTGSPLQNNLME 800
D + AR C AL+DGPDILVCDEAH+IKNTKAD TQALKQVKCQRRIALTGSPLQNNLME
Sbjct: 854 DLNAARGICNALRDGPDILVCDEAHIIKNTKADTTQALKQVKCQRRIALTGSPLQNNLME 913
Query: 801 YYCMVDFVREGFLGSSHEFRNR 822
YYCMVDFVREGFLGSS EFRNR
Sbjct: 914 YYCMVDFVREGFLGSSPEFRNR 935
Score = 292 bits (748), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 159/323 (49%), Positives = 211/323 (65%), Gaps = 5/323 (1%)
Query: 2 EGKADDEVVVDIESASSGS-FNDDSDDEGSLPSEIDDKV-IEEPLTEQEIEDXXXXXXXX 59
+G+ DE + D S S S FN D D++ + S DD++ +E+PL+E+EI++
Sbjct: 66 QGEQKDEEMQDASSRSESSDFNSDEDEQ--ILSRRDDELDLEKPLSEEEIDELISDLLAV 123
Query: 60 XXKXXXXXXXXXXXXXXKVESEFRQELKQTLQGDDLETAVADEMTTFKEDWEAVLDELET 119
K KVESE R+EL Q L+GD+L+ AVA EM TFK++WEA LDELET
Sbjct: 124 ESKAAEAQEALEKESLSKVESEVREELAQALRGDELDEAVAAEMMTFKDEWEATLDELET 183
Query: 120 EAAHLLEQLDGAGIELPSLYKLIEKEAPNVSCTEAWKRRNHWVGSETTAEISKSIGDAEQ 179
E+A LLEQLDGAGIELP LY++IE +APN TEAWK+R HWVG++ T E +S+ +AE+
Sbjct: 184 ESATLLEQLDGAGIELPKLYEMIESQAPNGCYTEAWKQRAHWVGTQVTKETVESLANAER 243
Query: 180 YLKGNRPVRRRHGKLLEEGASGFLQKKICAEA-QEPVKKEGEVDWDLFNKIISDESGGDA 238
+L +RPVR+RHGKLLEEGASGFL+KK+ A +E + E+DW NK+ S++
Sbjct: 244 FLHTHRPVRKRHGKLLEEGASGFLEKKLADGAVKESLAGTSELDWSSLNKVFSEKRDESV 303
Query: 239 SFGSRPWGCVYLASPRQQASLMGLKFPGXXXXXXXXXXXGNSTDPFVAAAIANERELDLS 298
SFGS+ W VYLAS QA+ MGL+FPG + DPF+A AI NEREL L+
Sbjct: 304 SFGSKQWASVYLASTPHQAAAMGLEFPGVNEVEEIEEIDASLADPFLADAIDNERELALT 363
Query: 299 DEQRRQFKKVKEEDDAIVDRKLQ 321
+EQ+ + +VKEEDD DR LQ
Sbjct: 364 EEQKTNYIRVKEEDDITCDRVLQ 386
>AT1G08600.4 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 482 bits (1240), Expect = e-136, Method: Compositional matrix adjust.
Identities = 236/322 (73%), Positives = 257/322 (79%), Gaps = 2/322 (0%)
Query: 501 AKINVTXXXXXXXXXXXXXXLDDAELGXXXXXXXXXXXXRQERLKSLRGQFSVSSIEMNS 560
A +NVT +DDAELG RQERL+SL QFS ++S
Sbjct: 616 ADVNVTISSKKKSKKKIRRIIDDAELGKDTRTKIAIEKARQERLRSL--QFSARYKTISS 673
Query: 561 GGCNGNLTEGASLEILGDAQAGYIVNVVREIGEEAVRIPASISAKLKAHQVTGIRFMWEN 620
G ++ EGA +E+LGDA +GYIVNVVREIGEEAVR+P SISAKLK HQVTGIRFMWEN
Sbjct: 674 MGDVKSIPEGAEVEVLGDAHSGYIVNVVREIGEEAVRVPRSISAKLKVHQVTGIRFMWEN 733
Query: 621 IIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVDLGLRTALIVTPVNVLHN 680
IIQSI +VKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMR VDLGL+TALIVTPVNVLHN
Sbjct: 734 IIQSISRVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLKTALIVTPVNVLHN 793
Query: 681 WRREFIKWAPSELTPLRIFMLEDVPRDRRAHLLAKWRAKGGVFLIGYSAFRNLSFGKNVK 740
WR EF KW PSE+ PLRIFML DV R+RR LL KWR KGGVFL+GY+ FRNLS G+ VK
Sbjct: 794 WRSEFEKWMPSEVKPLRIFMLGDVSRERRFDLLTKWRKKGGVFLMGYTNFRNLSLGRGVK 853
Query: 741 DRHMARETCRALQDGPDILVCDEAHMIKNTKADVTQALKQVKCQRRIALTGSPLQNNLME 800
D + AR C AL+DGPDILVCDEAH+IKNTKAD TQALKQVKCQRRIALTGSPLQNNLME
Sbjct: 854 DLNAARGICNALRDGPDILVCDEAHIIKNTKADTTQALKQVKCQRRIALTGSPLQNNLME 913
Query: 801 YYCMVDFVREGFLGSSHEFRNR 822
YYCMVDFVREGFLGSS EFRNR
Sbjct: 914 YYCMVDFVREGFLGSSPEFRNR 935
Score = 292 bits (748), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 159/323 (49%), Positives = 211/323 (65%), Gaps = 5/323 (1%)
Query: 2 EGKADDEVVVDIESASSGS-FNDDSDDEGSLPSEIDDKV-IEEPLTEQEIEDXXXXXXXX 59
+G+ DE + D S S S FN D D++ + S DD++ +E+PL+E+EI++
Sbjct: 66 QGEQKDEEMQDASSRSESSDFNSDEDEQ--ILSRRDDELDLEKPLSEEEIDELISDLLAV 123
Query: 60 XXKXXXXXXXXXXXXXXKVESEFRQELKQTLQGDDLETAVADEMTTFKEDWEAVLDELET 119
K KVESE R+EL Q L+GD+L+ AVA EM TFK++WEA LDELET
Sbjct: 124 ESKAAEAQEALEKESLSKVESEVREELAQALRGDELDEAVAAEMMTFKDEWEATLDELET 183
Query: 120 EAAHLLEQLDGAGIELPSLYKLIEKEAPNVSCTEAWKRRNHWVGSETTAEISKSIGDAEQ 179
E+A LLEQLDGAGIELP LY++IE +APN TEAWK+R HWVG++ T E +S+ +AE+
Sbjct: 184 ESATLLEQLDGAGIELPKLYEMIESQAPNGCYTEAWKQRAHWVGTQVTKETVESLANAER 243
Query: 180 YLKGNRPVRRRHGKLLEEGASGFLQKKICAEA-QEPVKKEGEVDWDLFNKIISDESGGDA 238
+L +RPVR+RHGKLLEEGASGFL+KK+ A +E + E+DW NK+ S++
Sbjct: 244 FLHTHRPVRKRHGKLLEEGASGFLEKKLADGAVKESLAGTSELDWSSLNKVFSEKRDESV 303
Query: 239 SFGSRPWGCVYLASPRQQASLMGLKFPGXXXXXXXXXXXGNSTDPFVAAAIANERELDLS 298
SFGS+ W VYLAS QA+ MGL+FPG + DPF+A AI NEREL L+
Sbjct: 304 SFGSKQWASVYLASTPHQAAAMGLEFPGVNEVEEIEEIDASLADPFLADAIDNERELALT 363
Query: 299 DEQRRQFKKVKEEDDAIVDRKLQ 321
+EQ+ + +VKEEDD DR LQ
Sbjct: 364 EEQKTNYIRVKEEDDITCDRVLQ 386
>AT1G08600.3 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 482 bits (1240), Expect = e-136, Method: Compositional matrix adjust.
Identities = 236/322 (73%), Positives = 257/322 (79%), Gaps = 2/322 (0%)
Query: 501 AKINVTXXXXXXXXXXXXXXLDDAELGXXXXXXXXXXXXRQERLKSLRGQFSVSSIEMNS 560
A +NVT +DDAELG RQERL+SL QFS ++S
Sbjct: 616 ADVNVTISSKKKSKKKIRRIIDDAELGKDTRTKIAIEKARQERLRSL--QFSARYKTISS 673
Query: 561 GGCNGNLTEGASLEILGDAQAGYIVNVVREIGEEAVRIPASISAKLKAHQVTGIRFMWEN 620
G ++ EGA +E+LGDA +GYIVNVVREIGEEAVR+P SISAKLK HQVTGIRFMWEN
Sbjct: 674 MGDVKSIPEGAEVEVLGDAHSGYIVNVVREIGEEAVRVPRSISAKLKVHQVTGIRFMWEN 733
Query: 621 IIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVDLGLRTALIVTPVNVLHN 680
IIQSI +VKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMR VDLGL+TALIVTPVNVLHN
Sbjct: 734 IIQSISRVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLKTALIVTPVNVLHN 793
Query: 681 WRREFIKWAPSELTPLRIFMLEDVPRDRRAHLLAKWRAKGGVFLIGYSAFRNLSFGKNVK 740
WR EF KW PSE+ PLRIFML DV R+RR LL KWR KGGVFL+GY+ FRNLS G+ VK
Sbjct: 794 WRSEFEKWMPSEVKPLRIFMLGDVSRERRFDLLTKWRKKGGVFLMGYTNFRNLSLGRGVK 853
Query: 741 DRHMARETCRALQDGPDILVCDEAHMIKNTKADVTQALKQVKCQRRIALTGSPLQNNLME 800
D + AR C AL+DGPDILVCDEAH+IKNTKAD TQALKQVKCQRRIALTGSPLQNNLME
Sbjct: 854 DLNAARGICNALRDGPDILVCDEAHIIKNTKADTTQALKQVKCQRRIALTGSPLQNNLME 913
Query: 801 YYCMVDFVREGFLGSSHEFRNR 822
YYCMVDFVREGFLGSS EFRNR
Sbjct: 914 YYCMVDFVREGFLGSSPEFRNR 935
Score = 292 bits (748), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 159/323 (49%), Positives = 211/323 (65%), Gaps = 5/323 (1%)
Query: 2 EGKADDEVVVDIESASSGS-FNDDSDDEGSLPSEIDDKV-IEEPLTEQEIEDXXXXXXXX 59
+G+ DE + D S S S FN D D++ + S DD++ +E+PL+E+EI++
Sbjct: 66 QGEQKDEEMQDASSRSESSDFNSDEDEQ--ILSRRDDELDLEKPLSEEEIDELISDLLAV 123
Query: 60 XXKXXXXXXXXXXXXXXKVESEFRQELKQTLQGDDLETAVADEMTTFKEDWEAVLDELET 119
K KVESE R+EL Q L+GD+L+ AVA EM TFK++WEA LDELET
Sbjct: 124 ESKAAEAQEALEKESLSKVESEVREELAQALRGDELDEAVAAEMMTFKDEWEATLDELET 183
Query: 120 EAAHLLEQLDGAGIELPSLYKLIEKEAPNVSCTEAWKRRNHWVGSETTAEISKSIGDAEQ 179
E+A LLEQLDGAGIELP LY++IE +APN TEAWK+R HWVG++ T E +S+ +AE+
Sbjct: 184 ESATLLEQLDGAGIELPKLYEMIESQAPNGCYTEAWKQRAHWVGTQVTKETVESLANAER 243
Query: 180 YLKGNRPVRRRHGKLLEEGASGFLQKKICAEA-QEPVKKEGEVDWDLFNKIISDESGGDA 238
+L +RPVR+RHGKLLEEGASGFL+KK+ A +E + E+DW NK+ S++
Sbjct: 244 FLHTHRPVRKRHGKLLEEGASGFLEKKLADGAVKESLAGTSELDWSSLNKVFSEKRDESV 303
Query: 239 SFGSRPWGCVYLASPRQQASLMGLKFPGXXXXXXXXXXXGNSTDPFVAAAIANERELDLS 298
SFGS+ W VYLAS QA+ MGL+FPG + DPF+A AI NEREL L+
Sbjct: 304 SFGSKQWASVYLASTPHQAAAMGLEFPGVNEVEEIEEIDASLADPFLADAIDNERELALT 363
Query: 299 DEQRRQFKKVKEEDDAIVDRKLQ 321
+EQ+ + +VKEEDD DR LQ
Sbjct: 364 EEQKTNYIRVKEEDDITCDRVLQ 386
>AT1G08600.1 | Symbols: ATRX, CHR20 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1458
Length = 1458
Score = 424 bits (1089), Expect = e-118, Method: Compositional matrix adjust.
Identities = 218/322 (67%), Positives = 236/322 (73%), Gaps = 23/322 (7%)
Query: 501 AKINVTXXXXXXXXXXXXXXLDDAELGXXXXXXXXXXXXRQERLKSLRGQFSVSSIEMNS 560
A +NVT +DDAELG RQERL+SL QFS ++S
Sbjct: 616 ADVNVTISSKKKSKKKIRRIIDDAELGKDTRTKIAIEKARQERLRSL--QFSARYKTISS 673
Query: 561 GGCNGNLTEGASLEILGDAQAGYIVNVVREIGEEAVRIPASISAKLKAHQVTGIRFMWEN 620
G ++ EGA +E+LGDA +GYIVNVVREIGEEAVR+P SISAKLK HQVTGIRFMWEN
Sbjct: 674 MGDVKSIPEGAEVEVLGDAHSGYIVNVVREIGEEAVRVPRSISAKLKVHQVTGIRFMWEN 733
Query: 621 IIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVDLGLRTALIVTPVNVLHN 680
IIQSI +VKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMR VDLGL+TALIVTPVNVLHN
Sbjct: 734 IIQSISRVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRCVDLGLKTALIVTPVNVLHN 793
Query: 681 WRREFIKWAPSELTPLRIFMLEDVPRDRRAHLLAKWRAKGGVFLIGYSAFRNLSFGKNVK 740
WR EF KW PSE+ PLRIFML DV R Y F +F VK
Sbjct: 794 WRSEFEKWMPSEVKPLRIFMLGDVSR--------------------YKFFYERNFW-GVK 832
Query: 741 DRHMARETCRALQDGPDILVCDEAHMIKNTKADVTQALKQVKCQRRIALTGSPLQNNLME 800
D + AR C AL+DGPDILVCDEAH+IKNTKAD TQALKQVKCQRRIALTGSPLQNNLME
Sbjct: 833 DLNAARGICNALRDGPDILVCDEAHIIKNTKADTTQALKQVKCQRRIALTGSPLQNNLME 892
Query: 801 YYCMVDFVREGFLGSSHEFRNR 822
YYCMVDFVREGFLGSS EFRNR
Sbjct: 893 YYCMVDFVREGFLGSSPEFRNR 914
Score = 292 bits (748), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 159/323 (49%), Positives = 211/323 (65%), Gaps = 5/323 (1%)
Query: 2 EGKADDEVVVDIESASSGS-FNDDSDDEGSLPSEIDDKV-IEEPLTEQEIEDXXXXXXXX 59
+G+ DE + D S S S FN D D++ + S DD++ +E+PL+E+EI++
Sbjct: 66 QGEQKDEEMQDASSRSESSDFNSDEDEQ--ILSRRDDELDLEKPLSEEEIDELISDLLAV 123
Query: 60 XXKXXXXXXXXXXXXXXKVESEFRQELKQTLQGDDLETAVADEMTTFKEDWEAVLDELET 119
K KVESE R+EL Q L+GD+L+ AVA EM TFK++WEA LDELET
Sbjct: 124 ESKAAEAQEALEKESLSKVESEVREELAQALRGDELDEAVAAEMMTFKDEWEATLDELET 183
Query: 120 EAAHLLEQLDGAGIELPSLYKLIEKEAPNVSCTEAWKRRNHWVGSETTAEISKSIGDAEQ 179
E+A LLEQLDGAGIELP LY++IE +APN TEAWK+R HWVG++ T E +S+ +AE+
Sbjct: 184 ESATLLEQLDGAGIELPKLYEMIESQAPNGCYTEAWKQRAHWVGTQVTKETVESLANAER 243
Query: 180 YLKGNRPVRRRHGKLLEEGASGFLQKKICAEA-QEPVKKEGEVDWDLFNKIISDESGGDA 238
+L +RPVR+RHGKLLEEGASGFL+KK+ A +E + E+DW NK+ S++
Sbjct: 244 FLHTHRPVRKRHGKLLEEGASGFLEKKLADGAVKESLAGTSELDWSSLNKVFSEKRDESV 303
Query: 239 SFGSRPWGCVYLASPRQQASLMGLKFPGXXXXXXXXXXXGNSTDPFVAAAIANERELDLS 298
SFGS+ W VYLAS QA+ MGL+FPG + DPF+A AI NEREL L+
Sbjct: 304 SFGSKQWASVYLASTPHQAAAMGLEFPGVNEVEEIEEIDASLADPFLADAIDNERELALT 363
Query: 299 DEQRRQFKKVKEEDDAIVDRKLQ 321
+EQ+ + +VKEEDD DR LQ
Sbjct: 364 EEQKTNYIRVKEEDDITCDRVLQ 386
>AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 |
chr3:6652799-6658876 REVERSE LENGTH=910
Length = 910
Score = 122 bits (307), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 116/225 (51%), Gaps = 32/225 (14%)
Query: 606 LKAHQVTGIRFMWENIIQSIRKVKSGDKGL----GCILAHTMGLGKTFQVIAFLYTAMRS 661
L+ HQ G++FM++ + SG G GCILA MGLGKT Q I LYT +
Sbjct: 180 LRPHQREGVQFMFDCV--------SGLHGSANINGCILADDMGLGKTLQSITLLYTLLCQ 231
Query: 662 VDLG---LRTALIVTPVNVLHNWRREFIKWAPSELTPLRIFMLEDVPRDRRAHL--LAKW 716
G ++ A+IVTP +++ NW E KW + I + E D + + +
Sbjct: 232 GFDGTPMVKKAIIVTPTSLVSNWEAEIKKWVGDRIQ--LIALCESTRDDVLSGIDSFTRP 289
Query: 717 RAKGGVFLIGYSAFRNLSFGKNVKDRHMARETCRALQDGPDILVCDEAHMIKNTKADVTQ 776
R+ V +I Y FR S + E+C D+L+CDEAH +KN + +
Sbjct: 290 RSALQVLIISYETFRMHS------SKFCQSESC-------DLLICDEAHRLKNDQTLTNR 336
Query: 777 ALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRN 821
AL + C+RR+ L+G+P+QN+L E++ MV+F G LG + FR+
Sbjct: 337 ALASLTCKRRVLLSGTPMQNDLEEFFAMVNFTNPGSLGDAAHFRH 381
>AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 |
chr3:6652799-6658876 REVERSE LENGTH=908
Length = 908
Score = 122 bits (307), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 77/225 (34%), Positives = 116/225 (51%), Gaps = 32/225 (14%)
Query: 606 LKAHQVTGIRFMWENIIQSIRKVKSGDKGL----GCILAHTMGLGKTFQVIAFLYTAMRS 661
L+ HQ G++FM++ + SG G GCILA MGLGKT Q I LYT +
Sbjct: 180 LRPHQREGVQFMFDCV--------SGLHGSANINGCILADDMGLGKTLQSITLLYTLLCQ 231
Query: 662 VDLG---LRTALIVTPVNVLHNWRREFIKWAPSELTPLRIFMLEDVPRDRRAHL--LAKW 716
G ++ A+IVTP +++ NW E KW + I + E D + + +
Sbjct: 232 GFDGTPMVKKAIIVTPTSLVSNWEAEIKKWVGDRIQ--LIALCESTRDDVLSGIDSFTRP 289
Query: 717 RAKGGVFLIGYSAFRNLSFGKNVKDRHMARETCRALQDGPDILVCDEAHMIKNTKADVTQ 776
R+ V +I Y FR S + E+C D+L+CDEAH +KN + +
Sbjct: 290 RSALQVLIISYETFRMHS------SKFCQSESC-------DLLICDEAHRLKNDQTLTNR 336
Query: 777 ALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRN 821
AL + C+RR+ L+G+P+QN+L E++ MV+F G LG + FR+
Sbjct: 337 ALASLTCKRRVLLSGTPMQNDLEEFFAMVNFTNPGSLGDAAHFRH 381
>AT2G21450.1 | Symbols: CHR34 | chromatin remodeling 34 |
chr2:9179622-9182356 REVERSE LENGTH=816
Length = 816
Score = 119 bits (299), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 114/210 (54%), Gaps = 14/210 (6%)
Query: 605 KLKAHQVTGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVDL 664
+++ HQ G RF+ N+ + D+ GCILAH G GKTF +I+FL + M ++D
Sbjct: 264 EMRPHQTEGFRFLCNNL--------AADEPGGCILAHAPGSGKTFLLISFLQSFM-AMDP 314
Query: 665 GLRTALIVTPVNVLHNWRREFIKWAPSELTPLRIFMLEDVPRDRRAHLLAKWRAKGGVFL 724
R L+V P ++ +W+REF W ++ L + ++ R ++ +L +W + +
Sbjct: 315 QAR-PLVVLPKGIIESWKREFTLWEVEKIPLLDFYSVKAESRKQQLKVLGQWIKERSILF 373
Query: 725 IGYSAFRNLSFGKNVKDRHMARETCR-ALQDGPDILVCDEAHMIKNTKADVTQALKQVKC 783
+GY F + N + A E C+ L + P +L+ DE H +N + + +L +VK
Sbjct: 374 LGYQQFTRIICDDNFE---AASEDCKLILLEKPTLLILDEGHTSRNKETYMLSSLARVKT 430
Query: 784 QRRIALTGSPLQNNLMEYYCMVDFVREGFL 813
+R++ LTG+ QNN+ E + ++D VR FL
Sbjct: 431 RRKVVLTGTLFQNNVEEVFNILDLVRPKFL 460
>AT2G16390.1 | Symbols: DRD1, CHR35, DMS1 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr2:7097638-7101182 FORWARD LENGTH=888
Length = 888
Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 112/212 (52%), Gaps = 16/212 (7%)
Query: 603 SAKLKAHQVTGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSV 662
+A++K HQ+ G +F+ N++ + D G GCI+AH G GKTF +I+F+ + +
Sbjct: 347 AAEMKPHQIEGFQFLCSNLV-------ADDPG-GCIMAHAPGSGKTFMIISFMQSFLAKY 398
Query: 663 DLGLRTALIVTPVNVLHNWRREFIKWAPSELTPLRIFMLEDVPRDRRAHLLAKWRAKGGV 722
L+V P +L W++EF++W ++ L + + R ++ +L +W K +
Sbjct: 399 PQA--KPLVVLPKGILPTWKKEFVRWQVEDIPLLDFYSAKAENRAQQLSILKQWMEKKSI 456
Query: 723 FLIGYSAFRNLSFGKNVKDRHMARETCR-ALQDGPDILVCDEAHMIKNTKADVTQALKQV 781
+GY F + V D +C+ L P IL+ DE H +N ++ Q+L QV
Sbjct: 457 LFLGYQQFSTI-----VCDDTTDSLSCQEILLKVPSILILDEGHTPRNEDTNLLQSLAQV 511
Query: 782 KCQRRIALTGSPLQNNLMEYYCMVDFVREGFL 813
+ R++ L+G+ QN++ E + +++ VR FL
Sbjct: 512 QTPRKVVLSGTLYQNHVKEVFNILNLVRPKFL 543
>AT3G42670.1 | Symbols: CHR38, CLSY | chromatin remodeling 38 |
chr3:14755906-14760085 REVERSE LENGTH=1256
Length = 1256
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/241 (32%), Positives = 121/241 (50%), Gaps = 32/241 (13%)
Query: 598 IPASISAKLKAHQVTGIRFMWENIIQSIRKV---KSGDKGLGCILAHTMGLGKTFQVIAF 654
IP + KL HQ F+W+N+ S+ S DK GC+++HT G GKTF +IAF
Sbjct: 667 IP-QLKRKLHLHQKKAFEFLWKNLAGSVVPAMMDPSSDKIGGCVVSHTPGAGKTFLIIAF 725
Query: 655 LYTAMRSVDLGLRTALIVTPVNVLHNWRREFIKW---APSELTPLR---------IFMLE 702
L + ++ + G R L++ P L+ W +EFIKW P L R E
Sbjct: 726 LASYLK-IFPGKR-PLVLAPKTTLYTWYKEFIKWEIPVPVHLLHGRRTYCMSKEKTIQFE 783
Query: 703 DVPRDRR--AHLL------AKWRAKGGVFLIGYSAFRNLSF--GKNVKDRHMARETCRAL 752
+P+ + H+L KW A+ V ++GY++F L K ++MA+ L
Sbjct: 784 GIPKPSQDVMHVLDCLDKIQKWHAQPSVLVMGYTSFLTLMREDSKFAHRKYMAK----VL 839
Query: 753 QDGPDILVCDEAHMIKNTKADVTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGF 812
++ P +LV DE H ++TK+ + +AL +V RI L+G+ QNN EY+ + R F
Sbjct: 840 RESPGLLVLDEGHNPRSTKSRLRKALMKVDTDLRILLSGTLFQNNFCEYFNTLCLARPKF 899
Query: 813 L 813
+
Sbjct: 900 V 900
>AT5G20420.1 | Symbols: CHR42 | chromatin remodeling 42 |
chr5:6899015-6903266 REVERSE LENGTH=1261
Length = 1261
Score = 113 bits (283), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 124/259 (47%), Gaps = 40/259 (15%)
Query: 598 IPASISAKLKAHQVTGIRFMWENIIQSIRKV----KSGDKGLGCILAHTMGLGKTFQVIA 653
IP + KL HQ F+W N+ S+ SG+ G GC+++H+ G GKTF +IA
Sbjct: 672 IP-KLKRKLHVHQRRAFEFLWRNVAGSVEPSLMDPTSGNIG-GCVISHSPGAGKTFLIIA 729
Query: 654 FLYTAMRSVDLGLRTALIVTPVNVLHNWRREFIKW---APSELTPLR----------IFM 700
FL + ++ G R L++ P L+ W +EFIKW P L R
Sbjct: 730 FLTSYLKLFP-GKR-PLVLAPKTTLYTWYKEFIKWEIPVPVHLIHGRRTYCTFKQNKTVQ 787
Query: 701 LEDVPRDRR--AHLL------AKWRAKGGVFLIGYSAFRNLSF--GKNVKDRHMARETCR 750
VP+ R H+L KW A V ++GY++F L K ++MA+
Sbjct: 788 FNGVPKPSRDVMHVLDCLEKIQKWHAHPSVLVMGYTSFTTLMREDSKFAHRKYMAK---- 843
Query: 751 ALQDGPDILVCDEAHMIKNTKADVTQALKQVKCQRRIALTGSPLQNNLMEYY---CMV-- 805
L++ P +LV DE H ++TK+ + +AL +V RI L+G+ QNN EY+ C+
Sbjct: 844 VLRESPGLLVLDEGHNPRSTKSRLRKALMKVGTDLRILLSGTLFQNNFCEYFNTLCLARP 903
Query: 806 DFVREGFLGSSHEFRNRQG 824
F+ E + +F+ G
Sbjct: 904 KFIHEVLMELDQKFKTNHG 922
>AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORWARD
LENGTH=862
Length = 862
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 122/264 (46%), Gaps = 60/264 (22%)
Query: 578 DAQAGYIVNVVREIGE-EAVRIPASISAKLKAHQVTGIRFMWENIIQSIRKVKSGDKGLG 636
D Y ++ IGE + +PASI+ +L HQ G++FM+ N+ ++ G
Sbjct: 110 DYSGPYEPLMLSSIGEIPIIHVPASINCRLLEHQREGVKFMY-NLYKN---------NHG 159
Query: 637 CILAHTMGLGKTFQVIAFLY-----------TAMRSVDLGLRTALIVTPVNVLHNWRREF 685
IL MGLGKT Q IAFL + + D G LI+ P +++HNW EF
Sbjct: 160 GILGDDMGLGKTIQTIAFLAAVYGKDGDAGESCLLESDKG--PVLIICPSSIIHNWESEF 217
Query: 686 IKWAPSELTPLRIFMLEDVPRDRRAHLLAKWRAKG-GVFLIGYSAFRNLSFGKNVKDRHM 744
+WA F + R +L K +A+G V + + FR
Sbjct: 218 SRWAS-------FFKVSVYHGSNRDMILEKLKARGVEVLVTSFDTFR------------- 257
Query: 745 ARETCRALQDGP-------DILVCDEAHMIKNTKADVTQALKQVKCQRRIALTGSPLQNN 797
GP +I++ DEAH +KN K+ + +A ++K ++RI LTG+ +QN
Sbjct: 258 --------IQGPVLSGINWEIVIADEAHRLKNEKSKLYEACLEIKTKKRIGLTGTVMQNK 309
Query: 798 LMEYYCMVDFVREGFLGSSHEFRN 821
+ E + + ++V G LG+ FR+
Sbjct: 310 ISELFNLFEWVAPGSLGTREHFRD 333
>AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr3:4065636-4073992 FORWARD LENGTH=2055
Length = 2055
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 110/227 (48%), Gaps = 30/227 (13%)
Query: 596 VRIPASISAKLKAHQVTGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFL 655
++P + L+ +Q G+ ++ V +K L ILA MGLGKT IA L
Sbjct: 526 TKLPFLLKHSLREYQHIGLDWL----------VTMYEKKLNGILADEMGLGKTIMTIALL 575
Query: 656 YTAMRSVDLGLR-TALIVTPVNVLHNWRREFIKWAPSELTPLRIFMLEDVPRDRRAHLLA 714
A + D G+ LIV P +V+ NW EF+KW P+ +I ++R+ L
Sbjct: 576 --AHLACDKGIWGPHLIVVPTSVMLNWETEFLKWCPA----FKILTYFGSAKERK--LKR 627
Query: 715 KWRAKGGVFLIGYSAFRNLSFGKNVKDRHMARETCRALQDGPDILVCDEAHMIKNTKADV 774
+ K F + + +R + ++D M + + L+ DEAH+IKN K+
Sbjct: 628 QGWMKLNSFHVCITTYRLV-----IQDSKMFK------RKKWKYLILDEAHLIKNWKSQR 676
Query: 775 TQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRN 821
Q L +RRI LTG+PLQN+LME + ++ F+ S EF++
Sbjct: 677 WQTLLNFNSKRRILLTGTPLQNDLMELWSLMHFLMPHVFQSHQEFKD 723
>AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 |
chr5:25592160-25598405 REVERSE LENGTH=1090
Length = 1090
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 106/233 (45%), Gaps = 22/233 (9%)
Query: 598 IPASISAKLKAHQVTGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT 657
+P I+ L HQ G+ ++W Q G G IL MGLGKT Q+ +FL
Sbjct: 369 LPGKIATMLYPHQREGLNWLWSLHTQ----------GKGGILGDDMGLGKTMQICSFLAG 418
Query: 658 AMRSVDLGLRTALIVTPVNVLHNWRREFIKWAPSELTPLRIFMLEDVPRDRRAHLLAKWR 717
S ++ AL+V P +L +W +E S++T + R+ H + + +
Sbjct: 419 LFHSK--LIKRALVVAPKTLLPHWMKELATVGLSQMTR-EYYGTSTKAREYDLHHILQGK 475
Query: 718 AKGGVFLIGYSAFRNLSFGKNVKDRHMARETCRALQDGP--DILVCDEAHMIKNTKADVT 775
G+ L Y RN + D + + +DG D ++ DE H+IKN
Sbjct: 476 ---GILLTTYDIVRNNTKALQGDDHYTDEDD----EDGNKWDYMILDEGHLIKNPNTQRA 528
Query: 776 QALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRQGFFTL 828
++L ++ RI ++G+P+QNNL E + + +F G LG + F+ + L
Sbjct: 529 KSLLEIPSSHRIIISGTPIQNNLKELWALFNFSCPGLLGDKNWFKQNYEHYIL 581
>AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1
| chromatin remodeling 1 | chr5:26649050-26652869
FORWARD LENGTH=764
Length = 764
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 105/227 (46%), Gaps = 37/227 (16%)
Query: 599 PASISAKLKAHQVTGIRFM---WENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFL 655
P +LK++Q+ G++++ W+N GL ILA MGLGKT Q I FL
Sbjct: 195 PLLTGGQLKSYQLKGVKWLISLWQN-------------GLNGILADQMGLGKTIQTIGFL 241
Query: 656 YTAMRSVDLGLRTALIVTPVNVLHNWRREFIKWAPSELTPLRIFMLEDVPRD--RRAHLL 713
+ ++ L L++ P++ L NW E ++ PS I+ + RD RR H+
Sbjct: 242 -SHLKGNGLD-GPYLVIAPLSTLSNWFNEIARFTPS--INAIIYHGDKNQRDELRRKHMP 297
Query: 714 AKWRAKGGVFLIGYSAFRNLSFGKNVKDRHMARETCRALQDGP-DILVCDEAHMIKNTKA 772
K + + Y N + R L+ P +V DE H +KN K
Sbjct: 298 KTVGPKFPIVITSYEVAMN--------------DAKRILRHYPWKYVVIDEGHRLKNHKC 343
Query: 773 DVTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEF 819
+ + LK +K ++ LTG+PLQNNL E + +++F+ S EF
Sbjct: 344 KLLRELKHLKMDNKLLLTGTPLQNNLSELWSLLNFILPDIFTSHDEF 390
>AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putative
| chr4:15431528-15438443 FORWARD LENGTH=1161
Length = 1161
Score = 92.0 bits (227), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 101/230 (43%), Gaps = 39/230 (16%)
Query: 599 PASISAKLKAHQVTGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTA 658
P ++ L +Q+ G+ F+ S K ILA MGLGKT Q IAFL +
Sbjct: 177 PEFLTGTLHTYQLEGLNFL----------RYSWSKKTNVILADEMGLGKTIQSIAFLASL 226
Query: 659 MRSVDLGLRTALIVTPVNVLHNWRREFIKWAPSELTPLRIFML------EDVPRDRRAHL 712
L L+V P++ + NW REF WAP + + M DV + +
Sbjct: 227 FEE---NLSPHLVVAPLSTIRNWEREFATWAPH----MNVVMYTGDSEARDVIWEHEFYF 279
Query: 713 LAKWRAKGGVFLIGYSAFR-NLSFGKNVKDRHMARETCRALQDGPDILVCDEAHMIKNTK 771
++K V L Y +S +K TC ++ DE H +KN K
Sbjct: 280 SEGRKSKFDVLLTTYEMVHPGISVLSPIK------WTC---------MIIDEGHRLKNQK 324
Query: 772 ADVTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRN 821
+ + +L Q + + LTG+PLQNNL E + ++ F+ GS +F++
Sbjct: 325 SKLYSSLSQFTSKHIVLLTGTPLQNNLNELFALMHFLDADKFGSLEKFQD 374
>AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putative
| chr4:15431528-15438443 FORWARD LENGTH=1202
Length = 1202
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/230 (28%), Positives = 101/230 (43%), Gaps = 39/230 (16%)
Query: 599 PASISAKLKAHQVTGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTA 658
P ++ L +Q+ G+ F+ S K ILA MGLGKT Q IAFL +
Sbjct: 218 PEFLTGTLHTYQLEGLNFL----------RYSWSKKTNVILADEMGLGKTIQSIAFLASL 267
Query: 659 MRSVDLGLRTALIVTPVNVLHNWRREFIKWAPSELTPLRIFML------EDVPRDRRAHL 712
L L+V P++ + NW REF WAP + + M DV + +
Sbjct: 268 FEE---NLSPHLVVAPLSTIRNWEREFATWAPH----MNVVMYTGDSEARDVIWEHEFYF 320
Query: 713 LAKWRAKGGVFLIGYSAFR-NLSFGKNVKDRHMARETCRALQDGPDILVCDEAHMIKNTK 771
++K V L Y +S +K TC ++ DE H +KN K
Sbjct: 321 SEGRKSKFDVLLTTYEMVHPGISVLSPIK------WTC---------MIIDEGHRLKNQK 365
Query: 772 ADVTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRN 821
+ + +L Q + + LTG+PLQNNL E + ++ F+ GS +F++
Sbjct: 366 SKLYSSLSQFTSKHIVLLTGTPLQNNLNELFALMHFLDADKFGSLEKFQD 415
>AT5G19310.1 | Symbols: | Homeotic gene regulator |
chr5:6498906-6503432 FORWARD LENGTH=1064
Length = 1064
Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 114/239 (47%), Gaps = 39/239 (16%)
Query: 587 VVREIGEEAVRIPASISA-KLKAHQVTGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGL 645
+ I E+ + P+ + +L+++Q+ G+++M V + ILA MGL
Sbjct: 366 AIHSIQEKVTKQPSLLQGGELRSYQLEGLQWM----------VSLYNNDYNGILADEMGL 415
Query: 646 GKTFQVIAFLYTAMRSVDLGLRTALIVTPVNVLHNWRREFIKWAPSELTPLRIFMLEDVP 705
GKT Q IA + + S DL LI+ P VL NW EF WAPS + F L D
Sbjct: 416 GKTIQTIALIAYLLESKDLH-GPHLILAPKAVLPNWENEFALWAPS----ISAF-LYDGS 469
Query: 706 RDRRAHLLAKWRAKGGVFLIGYSAF----RNLSFGKNVKDRHMARETCRALQDGPDILVC 761
+++R + A R GG F + + + R+ +F K + +M +
Sbjct: 470 KEKRTEIRA--RIAGGKFNVLITHYDLIMRDKAFLKKIDWNYM---------------IV 512
Query: 762 DEAHMIKNTKADVTQALKQ-VKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEF 819
DE H +KN + + + L + +RR+ LTG+P+QN+L E + +++F+ S H F
Sbjct: 513 DEGHRLKNHECALAKTLGTGYRIKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNSIHNF 571
>AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 |
chr2:8129154-8133502 FORWARD LENGTH=1187
Length = 1187
Score = 90.5 bits (223), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/256 (27%), Positives = 108/256 (42%), Gaps = 64/256 (25%)
Query: 593 EEAVRIPASISAKLKAHQVTGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVI 652
E + IP I KL +Q G++++WE Q G I+ MGLGKT QV+
Sbjct: 372 EGGLNIPECIFRKLFDYQRVGVQWLWELHCQRA----------GGIIGDEMGLGKTIQVL 421
Query: 653 AFLYTAMRSVDLGLRTALIVTPVNVLHNWRREFIKWAPSELTPLRIFMLEDVPRDR---- 708
+FL + S + ++I+ PV +L WRRE KW P + +L D +D
Sbjct: 422 SFLGSLHFSK--MYKPSIIICPVTLLRQWRREAQKWYPD----FHVEILHDSAQDSGHGK 475
Query: 709 ----------------------RAHLLAKW--------RAKGGVFLIGYSAFRNLSFGKN 738
++ KW ++ G+ + Y R
Sbjct: 476 GQGKASESDYDSESSVDSDHEPKSKNTKKWDSLLNRVLNSESGLLITTYEQLR------- 528
Query: 739 VKDRHMARETCRALQDGPDILVCDEAHMIKNTKADVTQALKQVKCQRRIALTGSPLQNNL 798
+ E ++ G +L DE H I+N +D+T KQ++ RI +TG+P+QN L
Sbjct: 529 -----LQGEKLLNIEWGYAVL--DEGHRIRNPNSDITLVCKQLQTVHRIIMTGAPIQNKL 581
Query: 799 MEYYCMVDFVREGFLG 814
E + + DFV G LG
Sbjct: 582 TELWSLFDFVFPGKLG 597
>AT1G05490.1 | Symbols: chr31 | chromatin remodeling 31 |
chr1:1618795-1623195 REVERSE LENGTH=1410
Length = 1410
Score = 90.1 bits (222), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 113/251 (45%), Gaps = 37/251 (14%)
Query: 597 RIPASISAKLKAHQVTGIRFMWENI-----IQSIRKVKSGDKGLGCILAHTMGLGKTFQV 651
+IP + +++ HQ G F+W+N+ + ++ ++ D+ GCI++H G GKT
Sbjct: 815 KIPG-VKSQMYPHQQEGFEFIWKNLAGTIMLNELKDFENSDETGGCIMSHAPGTGKTRLT 873
Query: 652 IAFLYTAMRSVDLGLRTALIVTPVNVLHNWRREFIKWAPS---------------ELTPL 696
I FL ++ +I+ P ++L W EF KW S L
Sbjct: 874 IIFLQAYLQCFPDC--KPVIIAPASLLLTWAEEFKKWNISIPFHNLSSLDFTGKENSAAL 931
Query: 697 RIFMLEDVP----RDRRAHLLAKWRAKGGVFLIGYSAFRNLSFGKNV-KDRHMARET--- 748
+ M ++ + R + W + I Y+ + L+ K+ K M RE
Sbjct: 932 GLLMQKNATARSNNEIRMVKIYSWIKSKSILGISYNLYEKLAGVKDEDKKTKMVREVKPD 991
Query: 749 -----CRALQDG-PDILVCDEAHMIKNTKADVTQALKQVKCQRRIALTGSPLQNNLMEYY 802
R + G P +LV DEAH +N ++ + + L +V+ Q+RI L+G+P QNN +E
Sbjct: 992 KELDDIREILMGRPGLLVLDEAHTPRNQRSCIWKTLSKVETQKRILLSGTPFQNNFLELC 1051
Query: 803 CMVDFVREGFL 813
++ R +L
Sbjct: 1052 NVLGLARPKYL 1062
>AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3543
Length = 3543
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 101/236 (42%), Gaps = 31/236 (13%)
Query: 587 VVREIGEEAVRIPAS-ISAKLKAHQVTGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGL 645
+ I E P+S + KL+ +Q+ G+R++ V + L ILA MGL
Sbjct: 734 MAHSIKENINEQPSSLVGGKLREYQMNGLRWL----------VSLYNNHLNGILADEMGL 783
Query: 646 GKTFQVIAFLYTAMRSV-DLGLRTALIVTPVNVLHNWRREFIKWAPSELTPLRIFMLEDV 704
GKT QVI+ + M + D G L+V P +VL W+ E WAPS + +
Sbjct: 784 GKTVQVISLICYLMETKNDRG--PFLVVVPSSVLPGWQSEINFWAPS----IHKIVYCGT 837
Query: 705 PRDRRAHLLAKW-RAKGGVFLIGYSAFRNLSFGKNVKDRHMARETCRALQDGPDILVCDE 763
P +RR + K V L Y N + H ++ DE
Sbjct: 838 PDERRKLFKEQIVHQKFNVLLTTYEYLMNKHDRPKLSKIHW------------HYIIIDE 885
Query: 764 AHMIKNTKADVTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEF 819
H IKN + LK R+ LTG+PLQNNL E + +++F+ SS +F
Sbjct: 886 GHRIKNASCKLNADLKHYVSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDF 941
>AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3574
Length = 3574
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 101/236 (42%), Gaps = 31/236 (13%)
Query: 587 VVREIGEEAVRIPAS-ISAKLKAHQVTGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGL 645
+ I E P+S + KL+ +Q+ G+R++ V + L ILA MGL
Sbjct: 734 MAHSIKENINEQPSSLVGGKLREYQMNGLRWL----------VSLYNNHLNGILADEMGL 783
Query: 646 GKTFQVIAFLYTAMRSV-DLGLRTALIVTPVNVLHNWRREFIKWAPSELTPLRIFMLEDV 704
GKT QVI+ + M + D G L+V P +VL W+ E WAPS + +
Sbjct: 784 GKTVQVISLICYLMETKNDRG--PFLVVVPSSVLPGWQSEINFWAPS----IHKIVYCGT 837
Query: 705 PRDRRAHLLAKW-RAKGGVFLIGYSAFRNLSFGKNVKDRHMARETCRALQDGPDILVCDE 763
P +RR + K V L Y N + H ++ DE
Sbjct: 838 PDERRKLFKEQIVHQKFNVLLTTYEYLMNKHDRPKLSKIHW------------HYIIIDE 885
Query: 764 AHMIKNTKADVTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEF 819
H IKN + LK R+ LTG+PLQNNL E + +++F+ SS +F
Sbjct: 886 GHRIKNASCKLNADLKHYVSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDF 941
>AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3529
Length = 3529
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 101/236 (42%), Gaps = 31/236 (13%)
Query: 587 VVREIGEEAVRIPAS-ISAKLKAHQVTGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGL 645
+ I E P+S + KL+ +Q+ G+R++ V + L ILA MGL
Sbjct: 734 MAHSIKENINEQPSSLVGGKLREYQMNGLRWL----------VSLYNNHLNGILADEMGL 783
Query: 646 GKTFQVIAFLYTAMRSV-DLGLRTALIVTPVNVLHNWRREFIKWAPSELTPLRIFMLEDV 704
GKT QVI+ + M + D G L+V P +VL W+ E WAPS + +
Sbjct: 784 GKTVQVISLICYLMETKNDRG--PFLVVVPSSVLPGWQSEINFWAPS----IHKIVYCGT 837
Query: 705 PRDRRAHLLAKW-RAKGGVFLIGYSAFRNLSFGKNVKDRHMARETCRALQDGPDILVCDE 763
P +RR + K V L Y N + H ++ DE
Sbjct: 838 PDERRKLFKEQIVHQKFNVLLTTYEYLMNKHDRPKLSKIHW------------HYIIIDE 885
Query: 764 AHMIKNTKADVTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEF 819
H IKN + LK R+ LTG+PLQNNL E + +++F+ SS +F
Sbjct: 886 GHRIKNASCKLNADLKHYVSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDF 941
>AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA
binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA
binding;helicases | chr3:20092361-20103807 FORWARD
LENGTH=2045
Length = 2045
Score = 86.7 bits (213), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 109/228 (47%), Gaps = 33/228 (14%)
Query: 602 ISAKLKAHQVTGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYT--AM 659
+ +L+ +Q GI W ++ + L IL MGLGKT Q A + + A
Sbjct: 1447 LKVQLRRYQQEGIN--WLGFLKRFK--------LHGILCDDMGLGKTLQASAIVASDAAE 1496
Query: 660 R--SVD-LGLRTALIVTPVNVLHNWRREFIKWAPSELTPLRIFMLEDVPRDRRAHLLAKW 716
R S D L + ++IV P ++ +W E K+ +L+ L + +DR + L +
Sbjct: 1497 RRGSTDELDVFPSIIVCPSTLVGHWAFEIEKYI--DLSLLSVLQYVGSAQDRVS--LREQ 1552
Query: 717 RAKGGVFLIGYSAFRNLSFGKNVKDRHMARETCRALQDGPDILVCDEAHMIKNTKADVTQ 776
V + Y R ++ Q + + DE H+IKN K+ +T
Sbjct: 1553 FNNHNVIITSYDVVR--------------KDVDYLTQFSWNYCILDEGHIIKNAKSKITA 1598
Query: 777 ALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRQG 824
A+KQ+K Q R+ L+G+P+QNN+ME + + DF+ GFLG+ +F+ G
Sbjct: 1599 AVKQLKAQHRLILSGTPIQNNIMELWSLFDFLMPGFLGTERQFQASYG 1646
>AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA
binding;helicases | chr3:20092361-20104153 FORWARD
LENGTH=2129
Length = 2129
Score = 86.7 bits (213), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 111/233 (47%), Gaps = 33/233 (14%)
Query: 597 RIPASISAKLKAHQVTGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLY 656
++ + +L+ +Q GI W ++ + L IL MGLGKT Q A +
Sbjct: 1473 KLCTELKVQLRRYQQEGIN--WLGFLKRFK--------LHGILCDDMGLGKTLQASAIVA 1522
Query: 657 T--AMR--SVD-LGLRTALIVTPVNVLHNWRREFIKWAPSELTPLRIFMLEDVPRDRRAH 711
+ A R S D L + ++IV P ++ +W E K+ +L+ L + +DR +
Sbjct: 1523 SDAAERRGSTDELDVFPSIIVCPSTLVGHWAFEIEKYI--DLSLLSVLQYVGSAQDRVS- 1579
Query: 712 LLAKWRAKGGVFLIGYSAFRNLSFGKNVKDRHMARETCRALQDGPDILVCDEAHMIKNTK 771
L + V + Y R ++ Q + + DE H+IKN K
Sbjct: 1580 -LREQFNNHNVIITSYDVVR--------------KDVDYLTQFSWNYCILDEGHIIKNAK 1624
Query: 772 ADVTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRQG 824
+ +T A+KQ+K Q R+ L+G+P+QNN+ME + + DF+ GFLG+ +F+ G
Sbjct: 1625 SKITAAVKQLKAQHRLILSGTPIQNNIMELWSLFDFLMPGFLGTERQFQASYG 1677
>AT3G24340.1 | Symbols: chr40 | chromatin remodeling 40 |
chr3:8832085-8835722 REVERSE LENGTH=1132
Length = 1132
Score = 85.5 bits (210), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/218 (28%), Positives = 100/218 (45%), Gaps = 24/218 (11%)
Query: 602 ISAKLKAHQVTGIRFMWENI--IQSIRKVKS-GDKGLG-CILAHTMGLGKTFQVIAFLYT 657
I L HQ G F+W+N+ I ++ S G KG G CI++H G GKT + FL +
Sbjct: 573 IKDTLYPHQQEGFEFIWKNLAGTTKINELNSVGVKGSGGCIISHKAGTGKTRLTVVFLQS 632
Query: 658 AMRSVDLGLRTALIVTPVNVLHNWRREFIKWAPS----ELTPLRIFMLED---VPR--DR 708
++ +++ P ++ W E KW + + L++ ED V R
Sbjct: 633 YLKR--FPNSHPMVIAPATLMRTWEDEVRKWNVNIPFYNMNSLQLSGYEDAEAVSRLEGN 690
Query: 709 RAH------LLAKWRAKGGVFLIGYSAFRNLSFGKNVKDRHMARETCRALQDGPDILVCD 762
R H L W + + I Y + L+ KN + + R R L + P +LV D
Sbjct: 691 RHHNSIRMVKLVSWWKQKSILGISYPLYEKLAANKNTEGMQVFR---RMLVELPGLLVLD 747
Query: 763 EAHMIKNTKADVTQALKQVKCQRRIALTGSPLQNNLME 800
E H +N + + + L +V+ ++RI L+G+ QNN E
Sbjct: 748 EGHTPRNQSSLIWKVLTEVRTEKRIFLSGTLFQNNFKE 785
>AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin
remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763
FORWARD LENGTH=1384
Length = 1384
Score = 84.0 bits (206), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/235 (29%), Positives = 101/235 (42%), Gaps = 33/235 (14%)
Query: 599 PASISAKLKAHQVTGI---RFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFL 655
P + L +Q+ G+ RF W K ILA MGLGKT Q IA L
Sbjct: 266 PEFLKGLLHPYQLEGLNFLRFSW-------------SKQTHVILADEMGLGKTIQSIALL 312
Query: 656 YTAMRSVDLGLRTALIVTPVNVLHNWRREFIKWAPSELTPLRIFMLEDVPRDR---RAH- 711
+ L L++ P++ L NW REF WAP + + M + R R H
Sbjct: 313 ASLFEE---NLIPHLVIAPLSTLRNWEREFATWAPQ----MNVVMYFGTAQARAVIREHE 365
Query: 712 -LLAKWRAKGGVFLIGY----SAFRNLSFGKNVKDRHMARETCRALQDGP-DILVCDEAH 765
L+K + K G S + + F + M L+ + ++ DE H
Sbjct: 366 FYLSKDQKKIKKKKSGQISSESKQKRIKFDVLLTSYEMINLDSAVLKPIKWECMIVDEGH 425
Query: 766 MIKNTKADVTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFR 820
+KN + + +L Q RI LTG+PLQNNL E + ++ F+ G GS EF+
Sbjct: 426 RLKNKDSKLFSSLTQYSSNHRILLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQ 480
>AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1072
Length = 1072
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 30/222 (13%)
Query: 599 PASISAKLKAHQVTGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTA 658
PA I KL+ +Q+ G+ ++ ++ + G+ ILA MGLGKT Q I+ L A
Sbjct: 187 PACIQGKLRDYQLAGLNWL----------IRLYENGINGILADEMGLGKTLQTISLL--A 234
Query: 659 MRSVDLGLR-TALIVTPVNVLHNWRREFIKWAPSELTPLRIFMLEDVPRDRRAHLLAKWR 717
G+ ++V P + L NW E ++ P LR P +RR H+ +
Sbjct: 235 YLHEYRGINGPHMVVAPKSTLGNWMNEIRRFCPV----LRAVKFLGNPEERR-HIREELL 289
Query: 718 AKGGVFLIGYSAFRNLSFGKNVKDRHMARETCRALQDGPDILVCDEAHMIKNTKADVTQA 777
G F I ++F K R R ++ DEAH IKN + +++
Sbjct: 290 V-AGKFDICVTSFEMAIKEKTTLRRFSWR-----------YIIIDEAHRIKNENSLLSKT 337
Query: 778 LKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEF 819
++ R+ +TG+PLQNNL E + +++F+ S+ F
Sbjct: 338 MRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEVFSSAETF 379
>AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1069
Length = 1069
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 101/222 (45%), Gaps = 30/222 (13%)
Query: 599 PASISAKLKAHQVTGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTA 658
PA I KL+ +Q+ G+ ++ ++ + G+ ILA MGLGKT Q I+ L A
Sbjct: 187 PACIQGKLRDYQLAGLNWL----------IRLYENGINGILADEMGLGKTLQTISLL--A 234
Query: 659 MRSVDLGLR-TALIVTPVNVLHNWRREFIKWAPSELTPLRIFMLEDVPRDRRAHLLAKWR 717
G+ ++V P + L NW E ++ P LR P +RR H+ +
Sbjct: 235 YLHEYRGINGPHMVVAPKSTLGNWMNEIRRFCPV----LRAVKFLGNPEERR-HIREELL 289
Query: 718 AKGGVFLIGYSAFRNLSFGKNVKDRHMARETCRALQDGPDILVCDEAHMIKNTKADVTQA 777
G F I ++F K R R ++ DEAH IKN + +++
Sbjct: 290 V-AGKFDICVTSFEMAIKEKTTLRRFSWR-----------YIIIDEAHRIKNENSLLSKT 337
Query: 778 LKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEF 819
++ R+ +TG+PLQNNL E + +++F+ S+ F
Sbjct: 338 MRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEVFSSAETF 379
>AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 |
chr5:18083659-18092162 REVERSE LENGTH=2223
Length = 2223
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 83/179 (46%), Gaps = 10/179 (5%)
Query: 633 KGLGCILAHTMGLGKTFQVIAFLYTAMRSVDLGL-RTALIVTPVNVLHNWRREFIKWAPS 691
K ILA MGLGKT AFL + + G+ R L++ P++ + NW EF WAP
Sbjct: 706 KSKNVILADEMGLGKTVSASAFLSSLY--FEFGVARPCLVLVPLSTMPNWLSEFSLWAPL 763
Query: 692 ELTPLRIFMLEDVPRDRRAHLLAKWRAKGGVFLIGYSAFRNLSFGKNVKDRHMARETCRA 751
L + + R +W AK + F + M
Sbjct: 764 ----LNVVEYHGSAKGRAIIRDYEWHAKNSTGTTKKPT--SYKFNVLLTTYEMVLADSSH 817
Query: 752 LQDGP-DILVCDEAHMIKNTKADVTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVR 809
L+ P ++LV DE H +KN+++ + L Q R+ LTG+PLQNN+ E Y +++F++
Sbjct: 818 LRGVPWEVLVVDEGHRLKNSESKLFSLLNTFSFQHRVLLTGTPLQNNIGEMYNLLNFLQ 876
>AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr2:523481-526884 FORWARD LENGTH=763
Length = 763
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 67/211 (31%), Positives = 101/211 (47%), Gaps = 30/211 (14%)
Query: 606 LKAHQVTGIRFMWENIIQSIRKVKSGDKGL-GCILAHTMGLGKTFQVIAFLYTAMRSVDL 664
LK +Q+ G+ F+ + KG+ G ILA MGLGKT Q I +L T + ++
Sbjct: 213 LKPYQLVGVNFL----------LLLYKKGIEGAILADEMGLGKTIQAITYL-TLLSRLNN 261
Query: 665 GLRTALIVTPVNVLHNWRREFIKWAPSELTPLRIFMLEDVPRDRRAHLLAKW--RAKGGV 722
L+V P +VL NW RE KW PS T L+ R + L+K V
Sbjct: 262 DPGPHLVVCPASVLENWERELRKWCPS-FTVLQYHGAARAAYSRELNSLSKAGKPPPFNV 320
Query: 723 FLIGYSAFRNLSFGKNVKDRHMA---RETCRALQDGPDILVCDEAHMIKNTKADVTQALK 779
L+ YS F S + DR + R +C ++ DEAH +K+ + + L
Sbjct: 321 LLVCYSLFERHS-EQQKDDRKVLKRWRWSC---------VLMDEAHALKDKNSYRWKNLM 370
Query: 780 QV--KCQRRIALTGSPLQNNLMEYYCMVDFV 808
V +R+ LTG+PLQN+L E + +++F+
Sbjct: 371 SVARNANQRLMLTGTPLQNDLHELWSLLEFM 401
>AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator |
chr3:1802435-1807284 REVERSE LENGTH=1102
Length = 1102
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 112/239 (46%), Gaps = 36/239 (15%)
Query: 586 NVVREIGEEAVRIPASISA-KLKAHQVTGIRFMWENIIQSIRKVKSGDKGLGCILAHTMG 644
+ + I E+ P+ + +L+++Q+ G+++M V + L ILA MG
Sbjct: 382 SAIHSIQEKVTEQPSLLEGGELRSYQLEGLQWM----------VSLFNNNLNGILADEMG 431
Query: 645 LGKTFQVIAFLYTAMRSVDLGLRTALIVTPVNVLHNWRREFIKWAPSELTPLRIFMLEDV 704
LGKT Q I+ + + + + LIV P VL NW EF W PS + F+ +
Sbjct: 432 LGKTIQTISLIAYLLENKGVP-GPYLIVAPKAVLPNWVNEFATWVPS----IAAFLYDGR 486
Query: 705 PRDRRAHLLAKWRAKG--GVFLIGYS-AFRNLSFGKNVKDRHMARETCRALQDGPDILVC 761
+R+A + K +G V + Y R+ +F K ++ +M +
Sbjct: 487 LEERKA-IREKIAGEGKFNVLITHYDLIMRDKAFLKKIEWYYM---------------IV 530
Query: 762 DEAHMIKNTKADVTQAL-KQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEF 819
DE H +KN ++ + + L + +RR+ LTG+P+QN+L E + +++F+ S F
Sbjct: 531 DEGHRLKNHESALAKTLLTGYRIKRRLLLTGTPIQNSLQELWSLLNFLLPHIFNSVQNF 589
>AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1056
Length = 1056
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 100/222 (45%), Gaps = 30/222 (13%)
Query: 599 PASISAKLKAHQVTGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTA 658
P+ I K++ +Q+ G+ ++ ++ + G+ ILA MGLGKT Q I+ L A
Sbjct: 182 PSCIQGKMRDYQLAGLNWL----------IRLYENGINGILADEMGLGKTLQTISLL--A 229
Query: 659 MRSVDLGLR-TALIVTPVNVLHNWRREFIKWAPSELTPLRIFMLEDVPRDRRAHLLAKWR 717
G+ ++V P + L NW E ++ P LR P +RR H+
Sbjct: 230 YLHEYRGINGPHMVVAPKSTLGNWMNEIRRFCPV----LRAVKFLGNPEERR-HIREDLL 284
Query: 718 AKGGVFLIGYSAFRNLSFGKNVKDRHMARETCRALQDGPDILVCDEAHMIKNTKADVTQA 777
G F I ++F K R R ++ DEAH IKN + +++
Sbjct: 285 V-AGKFDICVTSFEMAIKEKTALRRFSWR-----------YIIIDEAHRIKNENSLLSKT 332
Query: 778 LKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEF 819
++ R+ +TG+PLQNNL E + +++F+ S+ F
Sbjct: 333 MRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETF 374
>AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1055
Length = 1055
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 100/222 (45%), Gaps = 30/222 (13%)
Query: 599 PASISAKLKAHQVTGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTA 658
P+ I K++ +Q+ G+ ++ ++ + G+ ILA MGLGKT Q I+ L A
Sbjct: 182 PSCIQGKMRDYQLAGLNWL----------IRLYENGINGILADEMGLGKTLQTISLL--A 229
Query: 659 MRSVDLGLR-TALIVTPVNVLHNWRREFIKWAPSELTPLRIFMLEDVPRDRRAHLLAKWR 717
G+ ++V P + L NW E ++ P LR P +RR H+
Sbjct: 230 YLHEYRGINGPHMVVAPKSTLGNWMNEIRRFCPV----LRAVKFLGNPEERR-HIREDLL 284
Query: 718 AKGGVFLIGYSAFRNLSFGKNVKDRHMARETCRALQDGPDILVCDEAHMIKNTKADVTQA 777
G F I ++F K R R ++ DEAH IKN + +++
Sbjct: 285 V-AGKFDICVTSFEMAIKEKTALRRFSWR-----------YIIIDEAHRIKNENSLLSKT 332
Query: 778 LKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEF 819
++ R+ +TG+PLQNNL E + +++F+ S+ F
Sbjct: 333 MRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETF 374
>AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1057
Length = 1057
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 100/222 (45%), Gaps = 30/222 (13%)
Query: 599 PASISAKLKAHQVTGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTA 658
P+ I K++ +Q+ G+ ++ ++ + G+ ILA MGLGKT Q I+ L A
Sbjct: 182 PSCIQGKMRDYQLAGLNWL----------IRLYENGINGILADEMGLGKTLQTISLL--A 229
Query: 659 MRSVDLGLR-TALIVTPVNVLHNWRREFIKWAPSELTPLRIFMLEDVPRDRRAHLLAKWR 717
G+ ++V P + L NW E ++ P LR P +RR H+
Sbjct: 230 YLHEYRGINGPHMVVAPKSTLGNWMNEIRRFCPV----LRAVKFLGNPEERR-HIREDLL 284
Query: 718 AKGGVFLIGYSAFRNLSFGKNVKDRHMARETCRALQDGPDILVCDEAHMIKNTKADVTQA 777
G F I ++F K R R ++ DEAH IKN + +++
Sbjct: 285 V-AGKFDICVTSFEMAIKEKTALRRFSWR-----------YIIIDEAHRIKNENSLLSKT 332
Query: 778 LKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEF 819
++ R+ +TG+PLQNNL E + +++F+ S+ F
Sbjct: 333 MRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETF 374
>AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1507
Length = 1507
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 105/230 (45%), Gaps = 32/230 (13%)
Query: 595 AVRIPASISAKLKAHQVTGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAF 654
V+ P LK +Q+ G++++ V ++GL ILA MGLGKT Q +AF
Sbjct: 575 TVQTPELFKGTLKEYQMKGLQWL----------VNCYEQGLNGILADEMGLGKTIQAMAF 624
Query: 655 LYTAMRSVDLGLRTALIVTPVNVLHNWRREFIKWAPSELT-PLRIFMLEDVPRDRRAHLL 713
L ++ L+V P +VL+NW E ++ P T P + E + +
Sbjct: 625 LAHLAEEKNI-WGPFLVVAPASVLNNWADEISRFCPDLKTLPYWGGLQERTILRKNINPK 683
Query: 714 AKWRAKGGVFLIGYSAFRNL----SFGKNVKDRHMARETCRALQDGPDILVCDEAHMIKN 769
+R G F I ++++ L + + VK ++M V DEA IK+
Sbjct: 684 RMYRRDAG-FHILITSYQLLVTDEKYFRRVKWQYM---------------VLDEAQAIKS 727
Query: 770 TKADVTQALKQVKCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEF 819
+ + + L C+ R+ LTG+P+QNN+ E + ++ F+ + +F
Sbjct: 728 SSSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPMLFDNHDQF 777
>AT1G02670.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:576046-580299
FORWARD LENGTH=678
Length = 678
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 61/226 (26%), Positives = 95/226 (42%), Gaps = 27/226 (11%)
Query: 616 FMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLYTAMRSVDLG-----LRTAL 670
F+ IQ + V+ G ILA MG+GKT Q I+ L A R VD + L
Sbjct: 141 FLAWATIQELSAVRGG------ILADEMGMGKTIQAIS-LVLARREVDRAKSREAVGHTL 193
Query: 671 IVTPVNVLHNWRREFIKWAPSELTPLRIFMLEDVPRDRRAHLLAKWRAKGGVFLIGYSAF 730
++ P L W E + T R+ RD+ L + F++ S
Sbjct: 194 VLVPPVALSQWLDEISRLTSPGST--RVLQYHGPKRDKNVQKLMNYD-----FVLTTSPI 246
Query: 731 RNLSFGKNVKDRHMARETCRALQDGP-DILVCDEAHMIKNTKADVTQALKQVKCQRRIAL 789
+ K+ ET L + ++ DEAH IKN + +A+ ++ R AL
Sbjct: 247 VENEYRKD----EGVDETMSPLHSIKWNRIIVDEAHDIKNRSSRTAKAVFALEATYRWAL 302
Query: 790 TGSPLQNNLMEYYCMVDFVREGFLGSSH---EFRNRQGFFTLTVLI 832
+G+PLQN++ E Y +V + F S++ FR+ F V +
Sbjct: 303 SGTPLQNDVDELYSLVSYSFLNFFYSTYASFAFRHTHITFARNVTV 348
>AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein |
chr5:7565374-7570871 REVERSE LENGTH=1029
Length = 1029
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 66/140 (47%), Gaps = 12/140 (8%)
Query: 670 LIVTPVNVLHNWRREFIKWAPSELTPLRIFMLEDVPRDRRAHLLAKWRAKGGVFLIGYSA 729
LIV P+ +L W+ E A + + + P+D AK ++ V + Y
Sbjct: 493 LIVCPMTLLGQWKTEIEMHAKPGSLSVYVHYGQSRPKD------AKLLSQSDVVITTYGV 546
Query: 730 FRNLSFGKNVKDRHMARETCRALQDGPDILVCDEAHMIKNTKADVTQALKQVKCQRRIAL 789
+ +N D H R + +V DEAH IKN+K+ ++ A + RR L
Sbjct: 547 LTSEFSQENSAD-HEGIYAVRWFR-----IVLDEAHTIKNSKSQISLAAAALVADRRWCL 600
Query: 790 TGSPLQNNLMEYYCMVDFVR 809
TG+P+QNNL + Y ++ F+R
Sbjct: 601 TGTPIQNNLEDLYSLLRFLR 620
>AT1G48310.1 | Symbols: CHR18, CHA18 | chromatin remodeling factor18
| chr1:17848620-17853731 REVERSE LENGTH=673
Length = 673
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 94/235 (40%), Gaps = 31/235 (13%)
Query: 597 RIPASISAKLKAHQVTGIRFMWENIIQSIRKVKSGDKGLGCILAHTMGLGKTFQVIAFLY 656
+IP+ I KL Q GI F+ ++ G +LA MGLGKT Q IA
Sbjct: 163 KIPSHIEPKLLPFQREGIEFILQH-------------GGRVLLADEMGLGKTLQAIAVTT 209
Query: 657 TAMRSVDLGLRTALIVTPVNVLHNWRREFIKWAPSELTPLRIFMLEDVPRDRRAHLLAKW 716
S LI+ P ++ +W +W + + + + + ++ +
Sbjct: 210 CVQES-----WPVLIIAPSSLRLHWATMIHQWLHVPPSDIVVVLPQPGGSNKCGFTIVSS 264
Query: 717 RAKGGVFLIGYSAFRNLSFGKNVKDRHMARETCRALQDGPDILVCDEAHMIKNTKADVTQ 776
KG + L G + + MA + +++ DE+H +KN +A T
Sbjct: 265 NTKGTIHLDGVFNIVSYDVVTKLDKLLMALDF--------KVVIADESHFLKNGQAKRTS 316
Query: 777 ALKQV--KCQRRIALTGSPLQNNLMEYYCMVDFVREGFLGSSHEFRNRQ---GFF 826
A V K Q I L+G+P + +E + ++ + + HE+ R GFF
Sbjct: 317 ACLPVIKKAQYAILLSGTPALSRPIELFKQLEALYPDVYRNIHEYGGRYCKGGFF 371