Miyakogusa Predicted Gene

Lj5g3v1351990.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1351990.1 tr|G7JTT9|G7JTT9_MEDTR Dihydroorotase OS=Medicago
truncatula GN=MTR_4g078370 PE=3 SV=1,90,0,SUBFAMILY NOT NAMED,NULL;
FAMILY NOT NAMED,NULL; DIHYDROOROTASE_2,Dihydroorotase, conserved
site; Am,CUFF.55177.1
         (221 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G22930.1 | Symbols: PYR4, DHOASE | pyrimidin 4 | chr4:1201931...   384   e-107

>AT4G22930.1 | Symbols: PYR4, DHOASE | pyrimidin 4 |
           chr4:12019315-12021200 FORWARD LENGTH=377
          Length = 377

 Score =  384 bits (987), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 173/219 (78%), Positives = 201/219 (91%)

Query: 1   MVEQDLPLLVHGEVTNPEVDVFDREKVFIETILEPLVQRLPRLKVVMEHITTMDAVKFVE 60
           MV+Q++PLLVHGEVT+P +DVFDREK+FIET+L+PL+QRLP+LKVVMEHITTMDAV FVE
Sbjct: 158 MVKQNMPLLVHGEVTDPSIDVFDREKIFIETVLQPLIQRLPQLKVVMEHITTMDAVNFVE 217

Query: 61  SCKEGNVAATVTPQHLFLNRNALFQGGLQPHNYCLPVLKREIHRQAIVSAVTGGSTRFFL 120
           SCKEG+V ATVTPQHL LNRNALFQGGLQPHNYCLPVLKREIHR+AIV AVT GS +FFL
Sbjct: 218 SCKEGSVGATVTPQHLLLNRNALFQGGLQPHNYCLPVLKREIHREAIVKAVTSGSKKFFL 277

Query: 121 GTDSAPHDRRNKECSCGCAGIYNSLVALSIYAKVFEEAGALDKLEAFTSFNGPDFYGLPR 180
           GTDSAPH+R  KE SCGCAGIY++ +ALS+YAKVF+EAGALDKLEAFTSFNGPDFYGLPR
Sbjct: 278 GTDSAPHERSRKESSCGCAGIYSAPIALSLYAKVFDEAGALDKLEAFTSFNGPDFYGLPR 337

Query: 181 NKLKIKLRKAPWRVPEYLSFPFGDIVPMCAGQTLEWEAL 219
           N  KI L+K+PW+VP+  +FPFG+IVPM AG+TL+W+ L
Sbjct: 338 NSSKITLKKSPWKVPDVFNFPFGEIVPMFAGETLQWQPL 376