Miyakogusa Predicted Gene

Lj5g3v1351980.1
Show Alignment:  
BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1351980.1 Non Chatacterized Hit- tr|I1M230|I1M230_SOYBN
Uncharacterized protein (Fragment) OS=Glycine max
PE=4,42.61,2e-18,seg,NULL; no description,Helix-loop-helix domain;
coiled-coil,NULL,gene.g61602.t1.1
         (136 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G20970.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-bind...    77   3e-15

>AT4G20970.1 | Symbols:  | basic helix-loop-helix (bHLH) DNA-binding
           superfamily protein | chr4:11215259-11216212 FORWARD
           LENGTH=190
          Length = 190

 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 70/141 (49%), Gaps = 7/141 (4%)

Query: 1   MKILYSKLNSLLPNYNPKEAVPLPDQIDEAINYIKSL------XXXXXXXXXXXXSLGXX 54
           MK LYS+L SLLP+++  E + LPDQ+DEA NYIK L                  +L   
Sbjct: 27  MKSLYSELISLLPHHSSTEPLTLPDQLDEAANYIKKLQVNVEKKRERKRNLVATTTLEKL 86

Query: 55  XXXXXXXXXXXXXXXXXXXXPQLEVHETGSSLEVVLTCGLDNQFIFYEIIRILQEE-NID 113
                               P++E+ ETGS   + L   L+++F+F EIIR+L EE   +
Sbjct: 87  NSVGSSSVSSSVDVSVPRKLPKIEIQETGSIFHIFLVTSLEHKFMFCEIIRVLTEELGAE 146

Query: 114 VRSANSSMAGDSMLHVVHAEV 134
           +  A  S+  D++ H +H +V
Sbjct: 147 ITHAGYSIVDDAVFHTLHCKV 167