Miyakogusa Predicted Gene

Lj5g3v1340870.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1340870.1 Non Chatacterized Hit- tr|D7FGX7|D7FGX7_ECTSI
Putative uncharacterized protein OS=Ectocarpus
silicul,41.18,3e-16,SUBFAMILY NOT NAMED,NULL; THYROID RECEPTOR
INTERACTING PROTEIN RELATED,NULL; no description,NULL,CUFF.55158.1
         (153 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G20410.1 | Symbols:  | RNA-binding ASCH domain protein | chr2...   214   2e-56

>AT2G20410.1 | Symbols:  | RNA-binding ASCH domain protein |
           chr2:8802561-8804194 FORWARD LENGTH=339
          Length = 339

 Score =  214 bits (545), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 95/147 (64%), Positives = 117/147 (79%)

Query: 1   MEYFYKEIYALNGITDINFPQHYPVSRLLGCVEVVGCLKREELASWEMVPEGVRLEAQTD 60
           ME FY++IYA++GITDI FPQHYPVSRL+GCVEVVGC+  +EL +W+ +P+GVRLE QT+
Sbjct: 58  MEEFYQQIYAVDGITDIQFPQHYPVSRLIGCVEVVGCVTSDELQNWDALPQGVRLEGQTN 117

Query: 61  FCWLCEQPQKLLIPFEMRGYQGVYNLERKIYEAAVRGLSPVDSPLPVKFPLPDPRDPFSL 120
           FCWLCE+PQKL+IPFEMRGYQGVYNLE KIY AA RGL P  +   VKFPLPDP+DPFSL
Sbjct: 118 FCWLCEKPQKLIIPFEMRGYQGVYNLENKIYVAAARGLMPSQNSFKVKFPLPDPKDPFSL 177

Query: 121 RPGRIAALTPNLKATEVDKSSSVSLAI 147
           +PG I       K  +  + +S++ AI
Sbjct: 178 KPGSIPCTMQEKKELDSKQVTSLTAAI 204