Miyakogusa Predicted Gene

Lj5g3v1330840.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj5g3v1330840.1 Non Chatacterized Hit- tr|H9VC00|H9VC00_PINTA
Uncharacterized protein (Fragment) OS=Pinus taeda
GN=0,76.27,7e-17,seg,NULL,CUFF.55152.1
         (391 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G04560.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   437   e-123

>AT3G04560.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; EXPRESSED IN: 22 plant
           structures; EXPRESSED DURING: 16 growth stages; Has 227
           Blast hits to 225 proteins in 83 species: Archae - 0;
           Bacteria - 17; Metazoa - 98; Fungi - 29; Plants - 51;
           Viruses - 1; Other Eukaryotes - 31 (source: NCBI BLink).
           | chr3:1227506-1229338 REVERSE LENGTH=417
          Length = 417

 Score =  437 bits (1125), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 233/360 (64%), Positives = 274/360 (76%), Gaps = 14/360 (3%)

Query: 41  ILKSSLKRPNPTPT----ETQDTAPKKSLKFKLTTDASEAQVIEAMQKISSHIKNPAKFS 96
           +LKS+LKR  P+ +      +  APKK L+FK +TDASE QVIEAMQKI+SHIKNP+KFS
Sbjct: 63  VLKSALKRSKPSESTPEPVPEPEAPKKRLQFKTSTDASEEQVIEAMQKITSHIKNPSKFS 122

Query: 97  KAAKLAIQLVQAGSVTSSVSDYFFAILEAAMSSSSQHCTDPSVRADYHALFEVAQDIKEH 156
           KA+KLAI+L+QAGSV    S YF AILEAAMSS +  CTD SVRADYHALF  AQD+ E 
Sbjct: 123 KASKLAIRLIQAGSVKPETSSYFIAILEAAMSSKT-PCTDRSVRADYHALFSAAQDVAEC 181

Query: 157 LDKKQKNQLATWTINAVVANDLYTDDSFVFSRAAGKIKEAISNLPVATEEEDKDEATSLK 216
           LDK QKN L  WT  AVVANDL+TDDSF+FS+ A +IKEAIS+LPV+TEE+D +EA +L+
Sbjct: 182 LDKSQKNLLTIWTFKAVVANDLFTDDSFMFSKTATRIKEAISDLPVSTEEDDVEEAAALE 241

Query: 217 DSTVLVGEGGETV-----AANEHITDAEEADPFGLDALIPGSTKKGEKLKAKNGEAVKIR 271
           ++ V     G+T      AA+    +A E+DPFGLDA IP S KK  K K K        
Sbjct: 242 EAAVKDNGDGQTTQDVAEAASAGDNEAVESDPFGLDAWIPSSGKKNGKTKIKRTN----E 297

Query: 272 REDEEETKRFIKSQREALITCLEIAARRYKTPWCQTVIDILVKHAFDNVARFTAHQRDAV 331
             D EE KRF++S+REALITCLEIAARRYK PWCQTVIDILVKHAF+NV+RFT+ QR AV
Sbjct: 298 DPDAEENKRFLRSKREALITCLEIAARRYKVPWCQTVIDILVKHAFENVSRFTSQQRQAV 357

Query: 332 GKLWASIREQQTRRKQGKSVNGKLDVNAFEYLQEKYANEKISIRHSVGGSGDRKATQWLG 391
            KLWAS+REQ  RRKQGKSV GKLDV AFE LQ+KYANEK+SIR SVG SG+R+A QWLG
Sbjct: 358 EKLWASVREQHLRRKQGKSVTGKLDVTAFESLQDKYANEKMSIRSSVGASGERRAQQWLG 417